<div dir="ltr">Hi Daniel,<div><br></div><div>Thanks for telling us about this. We have a <a href="https://bitbucket.org/yt_analysis/yt/pull-requests/1768/improve-check_for_openmp/diff">pull request</a> open that should allow the install script to work normally when CC="ccache <compiler>" in the future. </div><div><br></div><div>Best,</div><div>Andrew</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Thu, Sep 24, 2015 at 12:47 PM, Schwen (Non-US), Daniel <span dir="ltr"><<a href="mailto:daniel.schwen@inl.gov" target="_blank">daniel.schwen@inl.gov</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Yeah, it built and installed. I can call<br>
'/opt/moose/miniconda/bin/yt'. It craps out because it does not find<br>
hdf5. I must have missed that dependency. Thanks for your help so far!<br>
Daniel<br>
<br>
On Thu, Sep 24, 2015 at 1:44 PM, Schwen (Non-US), Daniel<br>
<div class="HOEnZb"><div class="h5"><<a href="mailto:daniel.schwen@inl.gov">daniel.schwen@inl.gov</a>> wrote:<br>
> I think i'm having success with<br>
><br>
> sudo -E CC=clang CFLAGS="-I/opt/local/include"<br>
> LDFLAGS="-L/opt/local/lib" python setup.py develop<br>
><br>
><br>
><br>
> On Thu, Sep 24, 2015 at 1:43 PM, Schwen (Non-US), Daniel<br>
> <<a href="mailto:daniel.schwen@inl.gov">daniel.schwen@inl.gov</a>> wrote:<br>
>> and:<br>
>><br>
>> [10][schwd][~/Downloads/yt-hg]> CC=clang python test.py<br>
>> compiler is: clang<br>
>> filename is: test.c<br>
>> True<br>
>><br>
>> On Thu, Sep 24, 2015 at 1:42 PM, Schwen (Non-US), Daniel<br>
>> <<a href="mailto:daniel.schwen@inl.gov">daniel.schwen@inl.gov</a>> wrote:<br>
>>> and:<br>
>>><br>
>>> [10][schwd][~/Downloads/yt-hg]> CC=gcc python test.py<br>
>>> compiler is: gcc<br>
>>> filename is: test.c<br>
>>> False<br>
>>> [10][schwd][~/Downloads/yt-hg]> which gcc<br>
>>> /opt/moose/gcc_4.9.1/bin/gcc<br>
>>><br>
>>><br>
>>> On Thu, Sep 24, 2015 at 1:41 PM, Schwen (Non-US), Daniel<br>
>>> <<a href="mailto:daniel.schwen@inl.gov">daniel.schwen@inl.gov</a>> wrote:<br>
>>>> compiler is: ccache clang<br>
>>>> filename is: test.c<br>
>>>> Traceback (most recent call last):<br>
>>>> File "test.py", line 47, in <module><br>
>>>> print check_for_openmp()<br>
>>>> File "test.py", line 37, in check_for_openmp<br>
>>>> stdout=fnull, stderr=fnull)<br>
>>>> File "/opt/moose/miniconda/lib/python2.7/subprocess.py", line 522, in call<br>
>>>> return Popen(*popenargs, **kwargs).wait()<br>
>>>> File "/opt/moose/miniconda/lib/python2.7/subprocess.py", line 710, in __init__<br>
>>>> errread, errwrite)<br>
>>>> File "/opt/moose/miniconda/lib/python2.7/subprocess.py", line 1335,<br>
>>>> in _execute_child<br>
>>>> raise child_exception<br>
>>>> OSError: [Errno 2] No such file or directory<br>
>>>><br>
>>>> On Thu, Sep 24, 2015 at 1:32 PM, Andrew Myers <<a href="mailto:atmyers2@gmail.com">atmyers2@gmail.com</a>> wrote:<br>
>>>>> Hi Daniel,<br>
>>>>><br>
>>>>> Could you try running this python script using the same python you're trying<br>
>>>>> to install yt with? Does it give you some output, or does it fail with the<br>
>>>>> same error message?<br>
>>>>><br>
>>>>> Thanks,<br>
>>>>> Andrew<br>
>>>>><br>
>>>>> On Thu, Sep 24, 2015 at 12:05 PM, Andrew Myers <<a href="mailto:atmyers2@gmail.com">atmyers2@gmail.com</a>> wrote:<br>
>>>>>><br>
>>>>>> Hello yt users,<br>
>>>>>><br>
>>>>>> I'm working with Daniel Schwen of the MOOSE team to install yt from<br>
>>>>>> source. He is running OS X Yosemite, and trying to install yt over a<br>
>>>>>> miniconda python. After cloning my yt repository, the install script fails<br>
>>>>>> with the attached traceback. Does anyone have any ideas?<br>
>>>>>><br>
>>>>>> Thanks,<br>
>>>>>> Andrew<br>
>>>>>><br>
>>>>>> [10][schwd][~/Downloads/yt-hg]> CFLAGS="-I/opt/local/include"<br>
>>>>>> LDFLAGS="-L/opt/local/lib" python setup.py develop<br>
>>>>>><br>
>>>>>> /opt/moose/miniconda/lib/python2.7/site-packages/setuptools-18.3.2-py2.7.egg/setuptools/dist.py:285:<br>
>>>>>> UserWarning: Normalizing '3.3-dev' to '3.3.dev0'<br>
>>>>>> non-existing path in 'yt/utilities/spatial': 'yt/utilities/spatial/tests'<br>
>>>>>> Traceback (most recent call last):<br>
>>>>>> File "setup.py", line 227, in <module><br>
>>>>>> setup_package()<br>
>>>>>> File "setup.py", line 222, in setup_package<br>
>>>>>> cmdclass={'build_py': my_build_py, 'build_src': my_build_src},<br>
>>>>>> File<br>
>>>>>> "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/core.py",<br>
>>>>>> line 135, in setup<br>
>>>>>> config = configuration()<br>
>>>>>> File "setup.py", line 178, in configuration<br>
>>>>>> config.add_subpackage('yt', 'yt')<br>
>>>>>> File<br>
>>>>>> "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py",<br>
>>>>>> line 966, in add_subpackage<br>
>>>>>> caller_level = 2)<br>
>>>>>> File<br>
>>>>>> "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py",<br>
>>>>>> line 935, in get_subpackage<br>
>>>>>> caller_level = caller_level + 1)<br>
>>>>>> File<br>
>>>>>> "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py",<br>
>>>>>> line 872, in _get_configuration_from_setup_py<br>
>>>>>> config = setup_module.configuration(*args)<br>
>>>>>> File "yt/setup.py", line 18, in configuration<br>
>>>>>> config.add_subpackage('utilities')<br>
>>>>>> File<br>
>>>>>> "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py",<br>
>>>>>> line 966, in add_subpackage<br>
>>>>>> caller_level = 2)<br>
>>>>>> File<br>
>>>>>> "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py",<br>
>>>>>> line 935, in get_subpackage<br>
>>>>>> caller_level = caller_level + 1)<br>
>>>>>> File<br>
>>>>>> "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py",<br>
>>>>>> line 872, in _get_configuration_from_setup_py<br>
>>>>>> config = setup_module.configuration(*args)<br>
>>>>>> File "yt/utilities/setup.py", line 161, in configuration<br>
>>>>>> config.add_subpackage("lib")<br>
>>>>>> File<br>
>>>>>> "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py",<br>
>>>>>> line 966, in add_subpackage<br>
>>>>>> caller_level = 2)<br>
>>>>>> File<br>
>>>>>> "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py",<br>
>>>>>> line 935, in get_subpackage<br>
>>>>>> caller_level = caller_level + 1)<br>
>>>>>> File<br>
>>>>>> "/opt/moose/miniconda/lib/python2.7/site-packages/numpy/distutils/misc_util.py",<br>
>>>>>> line 872, in _get_configuration_from_setup_py<br>
>>>>>> config = setup_module.configuration(*args)<br>
>>>>>> File "yt/utilities/lib/setup.py", line 57, in configuration<br>
>>>>>> if check_for_openmp() == True:<br>
>>>>>> File "yt/utilities/lib/setup.py", line 37, in check_for_openmp<br>
>>>>>> stdout=fnull, stderr=fnull)<br>
>>>>>> File "/opt/moose/miniconda/lib/python2.7/subprocess.py", line 522, in<br>
>>>>>> call<br>
>>>>>> return Popen(*popenargs, **kwargs).wait()<br>
>>>>>> File "/opt/moose/miniconda/lib/python2.7/subprocess.py", line 710, in<br>
>>>>>> __init__<br>
>>>>>> errread, errwrite)<br>
>>>>>> File "/opt/moose/miniconda/lib/python2.7/subprocess.py", line 1335,<br>
>>>>>> in _execute_child<br>
>>>>>> raise child_exception<br>
>>>>>> OSError: [Errno 2] No such file or directory<br>
>>>>><br>
>>>>><br>
>>>><br>
>>>><br>
>>>><br>
>>>> --<br>
>>>> Daniel Schwen, PhD<br>
>>>> Staff Scientist, Fuels Modeling & Simulation<br>
>>>><br>
>>>> Idaho National Laboratory<br>
>>>> P.O. Box 1625, MS 3840<br>
>>>> Idaho Falls, ID 83415<br>
>>>><br>
>>>> Email: <a href="mailto:daniel.schwen@inl.gov">daniel.schwen@inl.gov</a><br>
>>>> Phone: <a href="tel:%28208%29%20526-4880" value="+12085264880">(208) 526-4880</a><br>
>>><br>
>>><br>
>>><br>
>>> --<br>
>>> Daniel Schwen, PhD<br>
>>> Staff Scientist, Fuels Modeling & Simulation<br>
>>><br>
>>> Idaho National Laboratory<br>
>>> P.O. Box 1625, MS 3840<br>
>>> Idaho Falls, ID 83415<br>
>>><br>
>>> Email: <a href="mailto:daniel.schwen@inl.gov">daniel.schwen@inl.gov</a><br>
>>> Phone: <a href="tel:%28208%29%20526-4880" value="+12085264880">(208) 526-4880</a><br>
>><br>
>><br>
>><br>
>> --<br>
>> Daniel Schwen, PhD<br>
>> Staff Scientist, Fuels Modeling & Simulation<br>
>><br>
>> Idaho National Laboratory<br>
>> P.O. Box 1625, MS 3840<br>
>> Idaho Falls, ID 83415<br>
>><br>
>> Email: <a href="mailto:daniel.schwen@inl.gov">daniel.schwen@inl.gov</a><br>
>> Phone: <a href="tel:%28208%29%20526-4880" value="+12085264880">(208) 526-4880</a><br>
><br>
><br>
><br>
> --<br>
> Daniel Schwen, PhD<br>
> Staff Scientist, Fuels Modeling & Simulation<br>
><br>
> Idaho National Laboratory<br>
> P.O. Box 1625, MS 3840<br>
> Idaho Falls, ID 83415<br>
><br>
> Email: <a href="mailto:daniel.schwen@inl.gov">daniel.schwen@inl.gov</a><br>
> Phone: <a href="tel:%28208%29%20526-4880" value="+12085264880">(208) 526-4880</a><br>
<br>
<br>
<br>
--<br>
Daniel Schwen, PhD<br>
Staff Scientist, Fuels Modeling & Simulation<br>
<br>
Idaho National Laboratory<br>
P.O. Box 1625, MS 3840<br>
Idaho Falls, ID 83415<br>
<br>
Email: <a href="mailto:daniel.schwen@inl.gov">daniel.schwen@inl.gov</a><br>
Phone: <a href="tel:%28208%29%20526-4880" value="+12085264880">(208) 526-4880</a><br>
</div></div></blockquote></div><br></div>