<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Oh! Well, that certainly simplifies things! Thank you! And it does fix my matplotlib error!<div class=""><br class=""></div><div class="">However, I still am seeing an error when I try to run my script (which was what happened to lead me down this insane road with updating yt and breaking matplotlib at the beginning). I’m getting an “Operation not defined” error, but when I create a scratch script to narrow down which part of line 14 is actually the undefined operation, they all work individually.</div><div class=""><br class=""></div><div class="">Script: <a href="http://paste.yt-project.org/show/5761/" class="">http://paste.yt-project.org/show/5761/</a></div><div class="">Error: <a href="http://paste.yt-project.org/show/5760/" class="">http://paste.yt-project.org/show/5760/</a></div><div class=""><br class=""></div><div class="">Any thoughts?</div><div class=""><br class=""></div><div class="">Again, thank you, I really appreciate all of your help.</div><div class=""><br class=""></div><div class="">Best,</div><div class="">Madison</div><div class=""><br class=""></div><div class=""><div class=""><br class=""></div><div class=""><br class=""><div class="">
<div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><div class="">Madison Fitzgerald</div><div class=""><br class=""></div><div class="">Astrophysics | Lyman Briggs College</div><div class="">Women’s & Gender Studies | College of Arts & Letters</div><div class="">LGBTQ and Sexuality Studies Specialization</div><div class=""><div class="">Women in Science, President</div><div class="">Undergraduate Teaching Assistant</div><div class="">Undergraduate Research Assistant</div><div class="">Department of Physics and Astronomy</div></div><div class="">Honors College</div><div class="">Michigan State University</div></div></div></div></div></div></div></div>
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<br class=""><div><blockquote type="cite" class=""><div class="">On Jul 30, 2015, at 11:18 AM, Nathan Goldbaum <<a href="mailto:nathan12343@gmail.com" class="">nathan12343@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class="">"yt update" won't work with the miniconda-based installation. Instead, when we do a new release you'll be able to get the updated yt package by doing "conda update yt".<div class=""><br class=""></div><div class="">You don't need to run an activate script if you're using miniconda's Python<span class=""></span>, just start Python, import yt, and load your data :)</div><div class=""><br class=""></div><div class="">Nathan</div><div class=""><br class="">On Thursday, July 30, 2015, Madison Fitzgerald <<a href="mailto:fitzg152@msu.edu" class="">fitzg152@msu.edu</a>> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word" class="">I figured out that miniconda was having an issue with another version of python, installed when I took a python-based programming class, and I was able to redirect my path to point to miniconda’s version instead, which solved that problem. However, I think my problem now is figuring out how to activate yt with miniconda. By that, I mean, I receive this output after installation and trying to take the first step:<div class=""><br class=""></div><div class="">"Hermione:~ madisonfitzgerald$ yt update<br class=""><br class="">yt module located at:<br class=""> /Users/madisonfitzgerald/miniconda/lib/python2.7/site-packages<br class=""><br class="">YT site-packages not in path, so you must<br class="">update this installation manually by committing and<br class="">merging your modifications to the code before<br class="">updating to the newest changeset.”</div><div class=""><br class=""><div class=""><br class=""></div><div class="">And I’m not sure what they mean by this.</div><div class=""><br class=""></div><div class="">Thank you so much for you help and your patience.</div><div class=""><br class=""><div class="">
<div style="letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><div style="letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><div style="letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><div style="letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><div style="letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><div style="letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; word-wrap: break-word;" class=""><div style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px;" class=""><div class="">Madison Fitzgerald</div><div class=""><br class=""></div><div class="">Astrophysics | Lyman Briggs College</div><div class="">Women’s & Gender Studies | College of Arts & Letters</div><div class="">LGBTQ and Sexuality Studies Specialization</div><div class=""><div class="">Women in Science, President</div><div class="">Undergraduate Teaching Assistant</div><div class="">Undergraduate Research Assistant</div><div class="">Department of Physics and Astronomy</div></div><div class="">Honors College</div><div class="">Michigan State University</div></div></div></div></div></div></div></div>
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<br class=""><div class=""><blockquote type="cite" class=""><div class="">On Jul 30, 2015, at 2:10 AM, Nathan Goldbaum <<a href="javascript:_e(%7B%7D,'cvml','nathan12343@gmail.com');" target="_blank" class="">nathan12343@gmail.com</a>> wrote:</div><br class=""><div class="">Can you explain a little bit more what's going wrong with the miniconda-based installation?<div class=""><br class=""></div><div class="">Unfortunately none of us have been able to reproduce the issue you're having with the install script and since it has something to do with matplotlib, I don't think any of us would know off-hand how to fix it in-place.<span class=""></span></div><div class=""><br class=""></div><div class="">Debugging issues like this over a mailing list is always potentially a frustrating experience, I'm sorry we haven't been able to come up with a suitable solution so far.<br class=""><br class="">On Wednesday, July 29, 2015, Madison Fitzgerald <<a href="javascript:_e(%7B%7D,'cvml','fitzg152@msu.edu');" target="_blank" class="">fitzg152@msu.edu</a>> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word" class="">Hi everyone,<div class=""><br class=""></div><div class="">Kacper: Sorry, my bad, but no, it didn’t work, unfortunately.</div><div class=""><br class=""></div><div class="">John and Nathan: Thank you, but I haven’t gotten anything to work, which is especially frustrating because I had a functioning yt just a few days ago. Installing yt with miniconda has only made yt less willing to function, not solve my matplotlib issue.</div><div class=""><br class=""></div><div class="">Truthfully, I’m really not sure where to go from here. Any thoughts?</div><div class=""><br class=""></div><div class="">Thank you,</div><div class="">Madison</div><div class=""><br class=""></div><div class=""><br class=""><div class="">
<div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px" class=""><div class="">Madison Fitzgerald</div><div class=""><br class=""></div><div class="">Astrophysics | Lyman Briggs College</div><div class="">Women’s & Gender Studies | College of Arts & Letters</div><div class="">LGBTQ and Sexuality Studies Specialization</div><div class=""><div class="">Women in Science, President</div><div class="">Undergraduate Teaching Assistant</div><div class="">Undergraduate Research Assistant</div><div class="">Department of Physics and Astronomy</div></div><div class="">Honors College</div><div class="">Michigan State University</div></div></div></div></div></div></div></div>
</div>
<br class=""><div class=""><blockquote type="cite" class=""><div class="">On Jul 29, 2015, at 11:01 PM, John ZuHone <<a class="">jzuhone@gmail.com</a>> wrote:</div><br class=""><div class=""><div style="word-wrap:break-word" class="">A bit late, but I can confirm that I was able to install from the install script on Mac OS 10.10 without any issue.<div class=""><br class=""><div class=""><blockquote type="cite" class=""><div class="">On Jul 29, 2015, at 7:06 PM, Kacper Kowalik <<a class="">xarthisius.kk@gmail.com</a>> wrote:</div><br class=""><div class=""><p dir="ltr" class="">Hi again,<br class="">
did setting backend to 'agg' also fail?<br class="">
Cheers,<br class="">
Kacper</p>
<div class="gmail_quote">On Jul 29, 2015 5:32 PM, "Nathan Goldbaum" <<a class="">nathan12343@gmail.com</a>> wrote:<br type="attribution" class=""><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr" class=""><br class=""><div class="gmail_extra"><br class=""><div class="gmail_quote">On Wed, Jul 29, 2015 at 5:30 PM, Madison Fitzgerald <span dir="ltr" class=""><<a class="">fitzg152@msu.edu</a>></span> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word" class="">Hi Nathan,<div class=""><br class=""></div><div class="">I’m still getting the same error when I uninstall and then reinstall matplotlib. How would I be able to use miniconda as a workaround?</div></div></blockquote><div class=""><br class=""></div><div class="">Following these instructions:</div><div class=""><br class=""></div><div class=""><a href="http://yt-project.org/docs/dev/installing.html#installing-yt-using-anaconda" target="_blank" class="">http://yt-project.org/docs/dev/installing.html#installing-yt-using-anaconda</a><br class=""></div><div class=""><br class=""></div><div class="">By the way, did you completely erase the old yt installation before rerunning the install script? Not doing so might be the cause of your issue.</div><div class=""> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word" class=""><div class=""><br class=""></div><div class="">Thank you,</div><div class="">Madison</div><div class=""><br class=""></div><div class=""><span class=""><br class=""><div class="">
<div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px" class=""><div class="">Madison Fitzgerald</div><div class=""><br class=""></div><div class="">Astrophysics | Lyman Briggs College</div><div class="">Women’s & Gender Studies | College of Arts & Letters</div><div class="">LGBTQ and Sexuality Studies Specialization</div><div class=""><div class="">Women in Science, President</div><div class="">Undergraduate Teaching Assistant</div><div class="">Undergraduate Research Assistant</div><div class="">Department of Physics and Astronomy</div></div><div class="">Honors College</div><div class="">Michigan State University</div></div></div></div></div></div></div></div>
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<br class=""></span><div class=""><div class=""><div class=""><blockquote type="cite" class=""><div class="">On Jul 29, 2015, at 5:30 PM, Nathan Goldbaum <<a class="">nathan12343@gmail.com</a>> wrote:</div><br class=""><div class=""><div dir="ltr" style="font-family:Helvetica;font-size:12px;font-style:normal;font-variant:normal;font-weight:normal;letter-spacing:normal;line-height:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px" class=""><div class="gmail_extra"><br class=""><br class=""><div class="gmail_quote">On Wed, Jul 29, 2015 at 4:19 PM, Madison Fitzgerald<span class=""> </span><span dir="ltr" class=""><<a class="">fitzg152@msu.edu</a>></span><span class=""> </span>wrote:<br class=""><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div style="word-wrap:break-word" class="">Hi everyone,<div class=""><br class=""></div><div class="">I’ve run into an error whenever I try to execute any yt command (see yt_run_error.txt, attached because I can’t use “yt pastebin”). I’ve tried following the steps on the help page, including re-installing yt, and I still get this same error. I just installed the latest stable yt version (I can’t execute the command to give you specific numbers) on Mac OS X 10.10.4.</div><div class=""><br class=""></div><div class="">Does anyone know where I should start to fix this?</div></div></blockquote><div class=""><br class=""></div><div class="">This is happening inside of matplotlib. </div><div class=""><br class=""></div><div class="">Can you try reinstalling the matplotlib that's in the yt environment? You should be able to do that with:</div><div class=""><br class=""></div><div class="">$ pip uninstall matplotlib</div><div class="">$ pip install matplotlib</div><div class=""><br class=""></div><div class="">And see if that works?</div><div class=""><br class=""></div><div class="">Failing that, a workaround would be to use a miniconda-based install. </div><div class=""><br class=""></div><div class="">I'm currently running the install script on my mac laptop to see if I can reproduce your issue.</div><div class=""><br class=""></div><div class="">-Nathan</div><div class=""> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex"><div style="word-wrap:break-word" class=""><div class=""><br class=""></div><div class="">Thank you,</div><div class="">Madison</div><div class=""><br class=""></div><div class=""><br class=""><div class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div style="letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;word-wrap:break-word" class=""><div 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