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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Hi Shankar,
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</div>
<div>I did two things to overcome the matplotlib install problem, the first one was right after pip was installed, I paused the installation (crtl-z) and used pip to install mock and setuptools, so when matplotlib is untrared it already finds a version of mock
and setuptools that works. The second step was doing what Stuart suggested, pausing the installation right after <span style="font-family: 'Segoe UI', Helvetica, Arial, sans-serif; font-size: 10pt;"><b>Installing matplotlib-1.4.4
</b>is printed to screen and modify the ...requires.txt file.</span></div>
<div><br>
</div>
<div>Best,</div>
<div>Juan</div>
<div><br>
</div>
<div><br>
<div style="font-size: 16px; font-family: 'Times New Roman'; color: rgb(0, 0, 0);">
<hr tabindex="-1">
<div id="divRpF895209" style="direction: ltr;"><font face="Tahoma" size="2" color="#000000"><b>From:</b> yt-users [yt-users-bounces@lists.spacepope.org] on behalf of Shankar Agarwal [agarwalshankar@gmail.com]<br>
<b>Sent:</b> Wednesday, July 22, 2015 6:06 PM<br>
<b>To:</b> Discussion of the yt analysis packageinstall <br>
<b>Subject:</b> Re: [yt-users] Installing matplotlib-1.4.0<br>
</font><br>
</div>
<div></div>
<div>
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<div>
<div>
<div>
<div>Jeff,<br>
<br>
Interesting. So the trick is to "suspend install_script.sh after it untarred matplot but before it begins installing dependencies". I gave it a few tries, but could not time the ctrl+z quite right.<br>
<br>
</div>
Is there a way to pause install_script.sh right after it untars matplot? Using "wait xxx seconds" command? I looked into the script but can not find where it untars matplot.<br>
</div>
<br>
</div>
By the way, I also tried manually untarring matplot and editing the matplotlib-1.4.0/lib/matplotlib.egg-info/requires.txt file. But when I run install_script.sh it overwrites the requires.txt back to the default.<br>
<br>
</div>
So no luck.<br>
<div>
<div><br>
Shankar<br>
<div>
<div><br>
<br>
</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Wed, Jul 22, 2015 at 10:52 PM, j s oishi <span dir="ltr">
<<a href="mailto:jsoishi@gmail.com" target="_blank">jsoishi@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left:1px solid rgb(204,204,204); padding-left:1ex">
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<div>
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<div>
<div>Shankar,<br>
<br>
</div>
Please see the discussion here:<br>
<br>
<a href="http://lists.spacepope.org/pipermail/yt-users-spacepope.org/2015-July/027891.html" target="_blank">http://lists.spacepope.org/pipermail/yt-users-spacepope.org/2015-July/027891.html</a><br>
<br>
</div>
I believe this fixed your problem for another user just a few days ago. It's a bit of a strange solution, but apparently successful.<br>
</div>
<br>
</div>
Jeff<br>
</div>
<div>
<div><br>
<div class="gmail_quote">
<div dir="ltr">On Wed, Jul 22, 2015 at 4:50 PM Shankar Agarwal <<a href="mailto:agarwalshankar@gmail.com" target="_blank">agarwalshankar@gmail.com</a>> wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left:1px solid rgb(204,204,204); padding-left:1ex">
<div dir="ltr">
<div>
<div>
<div>Currently "echo $PYTHONPATH" returns nothing.<br>
<br>
</div>
I added the following lines in my .bash_profile<br>
<br>
PYTHONPATH=/home/shankar/.local/lib/python2.6/site-packages<br>
export PYTHONPATH<br>
<br>
</div>
Now "echo $PYTHONPATH" returns:<br>
/home/shankar/.local/lib/python2.6/site-packages<br>
<br>
</div>
That directory has the following files:<br>
ls /home/shankar/.local/lib/python2.6/site-packages<br>
easy-install.pth setuptools-18.0.1-py2.6.egg setuptools.pth<br>
<br>
<div><br>
<div>But install_script.sh fails with same message. Thanks anyway. I will ask the sys admins.<br>
</div>
</div>
</div>
<div dir="ltr">
<div>
<div>Shankar<br>
</div>
</div>
</div>
<div dir="ltr">
<div>
<div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Wed, Jul 22, 2015 at 8:33 PM, Cameron Hummels <span dir="ltr">
<<a href="mailto:chummels@gmail.com" target="_blank">chummels@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left:1px solid rgb(204,204,204); padding-left:1ex">
<div dir="ltr">Perhaps someone else has some insight on this, but I imagine you have to change your $PYTHONPATH environment variable to point at the new setuptools installation before it hits the old one. So if you prepend $PYTHONPATH with the installation
directory (ie <span style="font-size:12.8px">/home/shankar/.local/lib/</span><span style="font-size:12.8px">python2.6/site-packages/</span><span style="font-size:12.8px">setuptools-18.0.1-py2.6.egg), that should work? </span><span><font color="#888888">
<div><span style="font-size:12.8px"><br>
</span></div>
<div><span style="font-size:12.8px">Cameron</span></div>
</font></span></div>
<div>
<div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Wed, Jul 22, 2015 at 2:43 AM, Shankar Agarwal <span dir="ltr">
<<a href="mailto:agarwalshankar@gmail.com" target="_blank">agarwalshankar@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left:1px solid rgb(204,204,204); padding-left:1ex">
<div dir="ltr">
<div>
<div>
<div>
<div>Hi Cameron,<br>
<br>
</div>
Ok, I installed setuptools-18.0.1 as follows:<br>
<br>
1. wget --no-check-certificate <a href="https://bootstrap.pypa.io/ez_setup.py" target="_blank">
https://bootstrap.pypa.io/ez_setup.py</a><br>
2. python ez_setup.py --insecure --user .<br>
<br>
</div>
Setuptools installation ended with this message:<br>
--------------------------------------------------------------------------------<br>
Installing easy_install script to /obs/shankar/.local/bin<br>
Installing easy_install-2.6 script to /obs/shankar/.local/bin<br>
<br>
Installed /home/shankar/.local/lib/python2.6/site-packages/setuptools-18.0.1-py2.6.egg<br>
Processing dependencies for setuptools==18.0.1<br>
Finished processing dependencies for setuptools==18.0.1<br>
--------------------------------------------------------------------------------<br>
<br>
</div>
Now, when I tried "bash install_script.sh", it quits with the same error message (mock requires setuptools>=17.1. Aborting installation).<br>
<br>
Do I need to edit install_script.sh somewhere to tell it where setuptools-18.0.1 is?<br>
<br>
</div>
<div>My current directory looks like this:<br>
<br>
pwd<br>
/obs/shankar/codes/yt<br>
<br>
ls<br>
ez_setup.py install_script.sh setuptools-18.0.1.zip yt-x86_64<br>
<br>
<br>
</div>
<div>Thanks<span><font color="#888888"><br>
</font></span></div>
<span><font color="#888888">Shankar<br>
</font></span></div>
<div>
<div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Tue, Jul 21, 2015 at 8:40 AM, Cameron Hummels <span dir="ltr">
<<a href="mailto:chummels@gmail.com" target="_blank">chummels@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left:1px solid rgb(204,204,204); padding-left:1ex">
<div dir="ltr">As per the failure message, you could try installing setuptools with a version more recent than 17.1. You could either install a copy of setuptools locally or request it of the sysadmins on Ada.
<div><br>
</div>
<div><a href="https://pypi.python.org/pypi/setuptools" target="_blank">https://pypi.python.org/pypi/setuptools</a><br>
</div>
<div><br>
</div>
<div>Cameron</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">
<div>
<div>On Mon, Jul 20, 2015 at 11:32 PM, Shankar Agarwal <span dir="ltr"><<a href="mailto:agarwalshankar@gmail.com" target="_blank">agarwalshankar@gmail.com</a>></span> wrote:<br>
</div>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left:1px solid rgb(204,204,204); padding-left:1ex">
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<div>
<div dir="ltr">
<div>
<div>
<div>Hi,<br>
<br>
</div>
My yt installation quits at matplotlib. The machine is <a href="http://www.idris.fr/eng/ada/ada-presentation-eng.html" target="_blank">
http://www.idris.fr/eng/ada/ada-presentation-eng.html</a><br>
<br>
Any idea how may I solve/bypass the following error:<br>
<br>
</div>
Thanks<br>
</div>
Shankar<br>
<br>
<div>
<div><br>
Installing distribute<br>
Installing pip<br>
Installing numpy-1.8.2<br>
Installing matplotlib-1.4.0<br>
********************************************<br>
FAILURE REPORT:<br>
********************************************<br>
<br>
Processing dependencies for matplotlib==1.4.0<br>
Searching for mock<br>
Reading <a href="http://pypi.python.org/simple/mock/" target="_blank">http://pypi.python.org/simple/mock/</a><br>
Best match: mock 1.2.0<br>
Downloading <a href="https://pypi.python.org/packages/source/m/mock/mock-1.2.0.tar.gz#md5=94ec3b0bea7486018196d59c05ff8645" target="_blank">
https://pypi.python.org/packages/source/m/mock/mock-1.2.0.tar.gz#md5=94ec3b0bea7486018196d59c05ff8645</a><br>
Processing mock-1.2.0.tar.gz<br>
Writing /tmp/easy_install-a12wMg/mock-1.2.0/setup.cfg<br>
Running mock-1.2.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-a12wMg/mock-1.2.0/egg-dist-tmp-1nkTUJ<br>
mock requires setuptools>=17.1. Aborting installation<br>
error: Setup script exited with 1<br>
<br>
********************************************<br>
<br>
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<br>
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<br clear="all">
<div><br>
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-- <br>
<div>
<div dir="ltr">
<div>Cameron Hummels
<div><span style="font-size:12.8px">NSF Postdoctoral Fellow</span></div>
<div><span style="font-size:12.8px">Department of Astronomy</span></div>
<div><span style="font-size:12.8px">California Institute of Technology</span><br>
</div>
<div><a href="http://chummels.org" style="font-size:12.8px" target="_blank">http://chummels.org</a><br>
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-- <br>
<div>
<div dir="ltr">
<div>Cameron Hummels
<div><span style="font-size:12.8px">NSF Postdoctoral Fellow</span></div>
<div><span style="font-size:12.8px">Department of Astronomy</span></div>
<div><span style="font-size:12.8px">California Institute of Technology</span><br>
</div>
<div><a href="http://chummels.org" style="font-size:12.8px" target="_blank">http://chummels.org</a><br>
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