<meta http-equiv="Content-Type" content="text/html; charset=utf-8"><div dir="ltr">The ExodusII format is a well-supported open source format for finite element data created by Sandia National Lab, it is similar to VTK in some ways, but has one nice feature: the ability to store multiple timesteps in single file, which can be a huge space saver for large finite element meshes.<div><br></div><div>It seems like you support reading VTK files and the VTK library supports the reading of ExodusII files so creating the ability to read Exodus shouldn't be much trouble. </div><div><br></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Thu, Dec 11, 2014 at 8:58 AM, John ZuHone <span dir="ltr"><<a href="mailto:jzuhone@gmail.com" target="_blank">jzuhone@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">Hi Andrew,<div><br></div><div>Sorry for the confusion—we do actually support installing from the install script on Yosemite, but it is not listed—which is our fault!</div><div><br></div><div>I just tried a standalone install of yt from the install script, but I could not reproduce your error—the installation of HDF5 passed. It appears that something in your DYLD_LIBRARY_PATH is interfering with the yt installation, which is still odd. Can you have a look at that environment variable (and at LD_LIBRARY_PATH, just in case)?</div><div><br></div><div>You can also set the HDF5_DIR environment variable in the script to an existing HDF5 installation.</div><div><br></div><div>I’m actually not familiar with ExodusII—I went to the sourceforge page for a quick look but was unable to find much documentation. I know we don’t support it as a format right now, but if it was something you wanted to do we could work with you on it. Could you describe a little bit the data format? Matt’s suggestions in his previous email could go a long way toward this. </div><div><br></div><div>Best,</div><div><br></div><div>John</div><div><br><div><blockquote type="cite"><div><div class="h5"><div>On Dec 11, 2014, at 10:04 AM, Slaughter, Andrew E <<a href="mailto:andrew.slaughter@inl.gov" target="_blank">andrew.slaughter@inl.gov</a>> wrote:</div><br></div></div><div><div><div class="h5"><div dir="ltr">I attempted to install yt using the install script, it failed with the error listed at the end of this message. This is mainly for your information, I am using OSX10.10, which was not listed in the installation preamble, so I am guessing it is not yet supported. I will attempt installing using another method.<div><br></div><div>Secondly, does yt support the reading of ExodusII files (<a href="http://sourceforge.net/projects/exodusii/" target="_blank">http://sourceforge.net/projects/exodusii/</a>)? If not, what code could I look at for adding this support?</div><div><br></div><div>Thanks,</div><div>Andrew</div><div><br><div><p>Installing HDF5</p><p>********************************************</p><p> FAILURE REPORT:</p><p>********************************************</p><p><br></p><p><span style="white-space:pre-wrap"> </span>sed -e 's/-L/:/g' -e 's/ //g'`" \</p><p><span style="white-space:pre-wrap"> </span> ./H5make_libsettings > H5lib_settings.c || \</p><p><span style="white-space:pre-wrap"> </span> (test $HDF5_Make_Ignore && echo "*** Error ignored") || \</p><p><span style="white-space:pre-wrap"> </span> (rm -f H5lib_settings.c ; exit 1)</p><p>dyld: Library not loaded: libz.so.1.2.8</p><p> Referenced from: /Users/slauae/Downloads/yt-x86_64/src/hdf5-1.8.11/src/./H5make_libsettings</p><p> Reason: image not found</p><p>/bin/sh: line 1: 96045 Trace/BPT trap: 5 LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo -L/Users/slauae/Downloads/yt-x86_64/lib/ -L/Users/slauae/Downloads/yt-x86_64/lib64/ -L/Users/slauae/Downloads/yt-x86_64/lib/ -L/Users/slauae/Downloads/yt-x86_64/lib64/ -L/Users/slauae/Downloads/yt-x86_64/lib/ -L/Users/slauae/Downloads/yt-x86_64/lib64/ -L/Users/slauae/Downloads/yt-x86_64/lib/ -L/Users/slauae/Downloads/yt-x86_64/lib64/ | <span style="white-space:pre-wrap"> </span>sed -e 's/-L/:/g' -e 's/ //g'`" ./H5make_libsettings > H5lib_settings.c</p><p>make[1]: *** [H5lib_settings.c] Error 1</p><p>make: *** [install-recursive] Error 1</p><p><br></p><p>********************************************</p><p>********************************************</p></div><div><br></div></div></div></div></div><span class="">
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