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just "abort" usually tells me it can't find enough memory while
loading the executable.<br>
I assume you got plenty of that.<br>
<br>
On linux I would then use 'strace' to see if the kernel tells me
more. And the ldd <br>
command to see what shared libs it might need.<br>
<br>
On a mac, there appears to be the dtruss command for strace. Me
and Mac appear <br>
to be in a continues state of dislike, all I got was<br>
dtrace: failed to initialize dtrace: DTrace requires
additional privileges<br>
so I'm sure somebody can tell me what that means (I don't have
admin on that mac)<br>
<br>
peter<br>
<br>
<br>
On 09/28/2014 03:36 PM, Mordecai-Mark Mac Low wrote:<br>
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type="cite">
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Hi, I am having a fatal problem installing yt on my MacBook Pro
running OS X v10.9.4. I am using the install script, with the
options set as follows:
<div><br>
</div>
<div><br>
<font color="#e63b7a"># Here's where you put the HDF5 path if
you like; otherwise it'll download it<br>
# and install it on its own<br>
#HDF5_DIR=/opt/local/lib<br>
<br>
# If you need to supply arguments to the NumPy or SciPy build,
supply them here<br>
# This one turns on gfortran manually:<br>
#NUMPY_ARGS="--fcompiler=gnu95"<br>
# If you absolutely can't get the fortran to work, try this:<br>
#NUMPY_ARGS="--fcompiler=fake"<br>
<br>
INST_HG=0 # Install Mercurial or not? If hg is not
already<br>
# installed, yt cannot be installed.<br>
INST_ZLIB=1 # On some systems (Kraken) matplotlib has
issues with<br>
# the system zlib, which is compiled
statically.<br>
# If need be, you can turn this off.<br>
INST_BZLIB=1 # On some systems, libbzip2 is missing. This
can<br>
# lead to broken mercurial installations.<br>
INST_PNG=1 # Install a local libpng? Same things apply
as with zlib.<br>
INST_FTYPE=1 # Install FreeType2 locally?<br>
INST_ENZO=0 # Clone a copy of Enzo?<br>
INST_SQLITE3=1 # Install a local version of SQLite3?<br>
INST_PYX=1 # Install PyX? Sometimes PyX can be
problematic without a<br>
# working TeX installation.<br>
INST_0MQ=1 # Install 0mq (for IPython) and affiliated
bindings?<br>
INST_ROCKSTAR=1 # Install the Rockstar halo finder?<br>
INST_SCIPY=0 # Install scipy?<br>
</font><br>
<br>
After downloading and activating Xcode command line tools, I got
the script to complete successfully. I activated it using the
activate.csh script. </div>
<div><br>
</div>
<div>However, when I then try to start yt, it pauses for 30
seconds or so, and then issues the response “<font
color="#e63b7a">Abort</font>”, with no further errors. I get
the same response if I try to import yt into the python (running
in the yt environment). Abort, and return to the command line.</div>
<div><br>
</div>
<div>I have tried erasing the yt-x86_64 directory and reinstalling
from scratch, with no change in behavior. I also examined the
yt_install.log. I found a number of, presumably irrelevant,
errors in the configuration tests, but also an error at the end
of the long section on building Ipython (almost at the end of
the script, just before readline assembly that looks possibly
relevant:</div>
<div><br>
</div>
<div><font color="#e63b7a"> gcc -dynamic -arch i386 -arch
x86_64 -arch_only `/usr/bin/arch`
-install_name /usr/local/lib/libreadline.6.2.dylib
-current_version 6.2 -compatibility_version 6 -v
-o libreadline.6.2.dylib readline.so vi_mode.so funmap.so
keymaps.so parens.so search.so rltty.so complete.so bind.so
isearch.so display.so signals.so util.so kill.so undo.so
macro.so input.so callback.so terminal.so text.so nls.so
misc.so xmalloc.so xfree.so history.so histexpand.so
histfile.so histsearch.so shell.so mbutil.so tilde.so
compat.so -lncurses<br>
Apple LLVM version 6.0 (clang-600.0.51) (based on LLVM
3.5svn)<br>
Target: x86_64-apple-darwin13.3.0<br>
Thread model: posix<br>
clang: error: invalid argument '-compatibility_version 6'
only allowed with '-dynamiclib'<br>
clang: error: invalid argument '-compatibility_version 6'
only allowed with '-dynamiclib'<br>
make[1]: *** [libreadline.6.2.dylib] Error 1<br>
make: [shared] Error 2 (ignored)<br>
</font><br>
Any insight on how to proceed?</div>
<div><br>
</div>
<div>Best,</div>
<div><br>
</div>
<div>Mordecai</div>
<div><br>
</div>
<div><br>
<div>--<br>
Mordecai-Mark Mac Low <span class="Apple-tab-span"
style="white-space:pre"> </span>Curator & Professor<br>
+1-212-496-3443 <span class="Apple-tab-span"
style="white-space:pre"> </span>Department of Astrophysics<br>
+1-212-769-5007 (fax) <span class="Apple-tab-span"
style="white-space:pre"> </span>American Museum of Natural
History<br>
mmaclow (Skype, Hangout) <span class="Apple-tab-span"
style="white-space:pre"> </span>79th St at CPW, NY, NY,
10024-5192, USA<br>
<br>
<br>
<br>
</div>
<br>
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