<div dir="ltr">Hi Matt, <div><br></div><div>Thanks for getting back to me.</div><div><br></div><div>I tried installing the bleeding edge version and am getting the following failure. It seems like YT_DIR isn't getting set? I don't have this problem with the stable version.</div>
<div><br></div><div><div><font face="courier new, monospace">[hit enter]</font></div><div><font face="courier new, monospace"><br></font></div><div><font face="courier new, monospace">Awesome! Here we go.</font></div><div>
<br></div><div><font face="courier new, monospace">Using wget</font></div><div><font face="courier new, monospace">Using sha512sum</font></div><div><font face="courier new, monospace">Downloading xray_emissivity.h5 from <a href="http://yt-project.org">yt-project.org</a></font></div>
<div><font face="courier new, monospace">Setting YT_DIR=</font></div><div><font face="courier new, monospace">Installing distribute</font></div><div><font face="courier new, monospace">********************************************</font></div>
<div><font face="courier new, monospace"> FAILURE REPORT:</font></div><div><font face="courier new, monospace">********************************************</font></div><div><font face="courier new, monospace"><br>
</font></div>
<div><font face="courier new, monospace">make[1]: Leaving directory `/lustre/home/client/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/src/zeromq-3.2.4/src'</font></div><div><font face="courier new, monospace">make: *** [install-recursive] Error 1</font></div>
<div><font face="courier new, monospace">/home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/bin/python2.7: can't open file '/distribute_setup.py': [Errno 2] No such file or directory</font></div>
<div>
<font face="courier new, monospace">/home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/bin/python2.7: can't open file '/distribute_setup.py': [Errno 2] No such file or directory</font></div><div>
<font face="courier new, monospace">/home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/bin/python2.7: can't open file '/distribute_setup.py': [Errno 2] No such file or directory</font></div>
<div><font face="courier new, monospace">/home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/bin/python2.7: can't open file '/distribute_setup.py': [Errno 2] No such file or directory</font></div>
<div>
<font face="courier new, monospace">/home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/bin/python2.7: can't open file '/distribute_setup.py': [Errno 2] No such file or directory</font></div><div>
<font face="courier new, monospace">/home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/bin/python2.7: can't open file '/distribute_setup.py': [Errno 2] No such file or directory</font></div>
<div><font face="courier new, monospace">/home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/bin/python2.7: can't open file '/distribute_setup.py': [Errno 2] No such file or directory</font></div>
<div>
<font face="courier new, monospace">/home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/bin/python2.7: can't open file '/distribute_setup.py': [Errno 2] No such file or directory</font></div><div>
<font face="courier new, monospace"><br>
</font></div><div><font face="courier new, monospace">********************************************</font></div><div><font face="courier new, monospace">********************************************</font></div><div><font face="courier new, monospace">Failure. Check /home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/yt_install.log. The last 10 lines are above.</font></div>
</div><div><br></div><div><br></div><div>On a related note, whenever I install either version, the install also fails when installing ZeroMQ:</div><div><br></div><div><div><font face="courier new, monospace">Installing mercurial-3.0<br>
</font></div><div><div><font face="courier new, monospace">Setting YT_DIR=/home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/src/yt-hg/</font></div><div><font face="courier new, monospace">Installing distribute</font></div>
<div><font face="courier new, monospace">Installing pip</font></div><div><font face="courier new, monospace">Installing numpy-1.7.1</font></div><div><font face="courier new, monospace">Installing matplotlib-1.3.0</font></div>
<div><font face="courier new, monospace">Installing ZeroMQ</font></div><div><font face="courier new, monospace">********************************************</font></div><div><font face="courier new, monospace"> FAILURE REPORT:</font></div>
<div><font face="courier new, monospace">********************************************</font></div><div><font face="courier new, monospace"><br></font></div><div><font face="courier new, monospace"> CXX libzmq_la-ipc_address.lo</font></div>
<div><font face="courier new, monospace"> CXX libzmq_la-ipc_connecter.lo</font></div><div><font face="courier new, monospace">stream_engine.hpp(97): error #82: storage class is not first</font></div><div><font face="courier new, monospace"> const static size_t greeting_size = 12;</font></div>
<div><font face="courier new, monospace"> ^</font></div><div><font face="courier new, monospace"><br></font></div><div><font face="courier new, monospace">compilation aborted for ipc_connecter.cpp (code 2)</font></div>
<div><font face="courier new, monospace">make[1]: *** [libzmq_la-ipc_connecter.lo] Error 1</font></div><div><font face="courier new, monospace">make[1]: Leaving directory `/lustre/home/client/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/src/zeromq-3.2.4/src'</font></div>
<div><font face="courier new, monospace">make: *** [install-recursive] Error 1</font></div><div><font face="courier new, monospace"><br></font></div><div><font face="courier new, monospace">********************************************</font></div>
<div><font face="courier new, monospace">********************************************</font></div><div><font face="courier new, monospace">Failure. Check /home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/yt_install.log. The last 10 lines are above.</font></div>
</div></div><div><br></div><div>But I just fix the const static to static const in stream_engine.hpp and it gets past that particular error (in the stable version anyway). Let me know if I shouldn't be messing with that. </div>
<div><br></div><div>Actually, it appears to get YT_DIR the correctly the first time through, but when I restart it after fixing the ZeroMQ bug, it fails to set YT_DIR. So, just to be extra thorough, I tried manually setting YT_DIR on l.54 to /home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/src/yt-hg/ (as it was set the first time). If I do this, it gets past the above error and I ultimately get the same error as for the stable version (the original reason of this email):</div>
<div><br></div><div><div><font face="courier new, monospace">[hit enter]</font></div><div><font face="courier new, monospace"><br></font></div><div><font face="courier new, monospace">Awesome! Here we go.</font></div><div>
<font face="courier new, monospace"><br></font></div><div><font face="courier new, monospace">Using wget</font></div><div><font face="courier new, monospace">Using sha512sum</font></div><div><font face="courier new, monospace">Downloading xray_emissivity.h5 from <a href="http://yt-project.org">yt-project.org</a></font></div>
<div><font face="courier new, monospace">Installing distribute</font></div><div><font face="courier new, monospace">Installing pip</font></div><div><font face="courier new, monospace">Installing ZeroMQ</font></div><div><font face="courier new, monospace">Installing pyzmq-13.1.0 (arguments: '--zmq=/home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64')</font></div>
<div><font face="courier new, monospace">Installing tornado-3.1</font></div><div><font face="courier new, monospace">Installing ipython-1.1.0</font></div><div><font face="courier new, monospace">Installing h5py-2.1.3</font></div>
<div><font face="courier new, monospace">Installing Cython-0.19.1</font></div><div><font face="courier new, monospace">Installing Forthon-0.8.11</font></div><div><font face="courier new, monospace">Installing nose-1.3.0</font></div>
<div><font face="courier new, monospace">Installing python-hglib-1.0</font></div><div><font face="courier new, monospace">Installing sympy-0.7.3</font></div><div><font face="courier new, monospace">Doing yt update, wiping local changes and updating to branch yt-3.0</font></div>
<div><font face="courier new, monospace">Installing yt</font></div><div><font face="courier new, monospace">********************************************</font></div><div><font face="courier new, monospace"> FAILURE REPORT:</font></div>
<div><font face="courier new, monospace">********************************************</font></div><div><font face="courier new, monospace"><br></font></div><div><font face="courier new, monospace">pulling from <a href="https://bitbucket.org/yt_analysis/yt/">https://bitbucket.org/yt_analysis/yt/</a></font></div>
<div><font face="courier new, monospace">searching for changes</font></div><div><font face="courier new, monospace">no changes found</font></div><div><font face="courier new, monospace">0 files updated, 0 files merged, 0 files removed, 0 files unresolved</font></div>
<div><font face="courier new, monospace">The required version of distribute (>=0.6.32) is not available,</font></div><div><font face="courier new, monospace">and can't be installed while this script is running. Please</font></div>
<div><font face="courier new, monospace">install a more recent version first, using</font></div><div><font face="courier new, monospace">'easy_install -U distribute'.</font></div><div><font face="courier new, monospace"><br>
</font></div><div><font face="courier new, monospace">(Currently using distribute 0.6.21 (/lustre/home/client/apps/fas/Langs/Python/2.7.2/lib/python2.7/site-packages/distribute-0.6.21-py2.7.egg))</font></div><div><font face="courier new, monospace"><br>
</font></div><div><font face="courier new, monospace">********************************************</font></div><div><font face="courier new, monospace">********************************************</font></div><div><font face="courier new, monospace">Failure. Check /home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/yt_install.log. The last 10 lines are above.</font></div>
</div><div><br></div><div><font face="courier new, monospace"><br></font></div><div><font face="arial, helvetica, sans-serif">Thanks,</font></div><div><font face="arial, helvetica, sans-serif">Kaylea</font></div></div><div class="gmail_extra">
<br><br><div class="gmail_quote">On Tue, May 13, 2014 at 7:38 AM, Matthew Turk <span dir="ltr"><<a href="mailto:matthewturk@gmail.com" target="_blank">matthewturk@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi Kaylea,<br>
<br>
Wow! That's super weird. Would you mind having another go, wiping<br>
the yt-x86_64 directory, and trying the "bleeding edge" install<br>
script? I'm wondering if one of the updates there -- maybe to SSL or<br>
something -- would fix it. Indeed, it shouldn't be using the system<br>
python...<br>
<br>
-Matt<br>
<div><div class="h5"><br>
On Mon, May 12, 2014 at 1:29 PM, Kaylea Nelson <<a href="mailto:kaylea.nelson@yale.edu">kaylea.nelson@yale.edu</a>> wrote:<br>
> Hi,<br>
><br>
> I'm trying to install the latest stable yt version via the install_script.sh<br>
> on a Red Hat 6 based HPC. I'm getting a very confusing error during the<br>
> final steps of the installation, which can be seen here:<br>
> <a href="http://paste.yt-project.org/show/4612/" target="_blank">http://paste.yt-project.org/show/4612/</a><br>
><br>
> Basically, during the step where yt updates from the repo and then attempts<br>
> to install, it looks in a very odd place for the distribute python package.<br>
> I can't simply update that version, because I'm on an HPC, but I think the<br>
> problem is deeper than that. Its looking for it in a version of python that<br>
> I don't even have loaded in my environment, in a directory that isn't in my<br>
> PYTHONPATH. I've tried wiping out my python path prior to install as well,<br>
> but with the same results. From my understanding, yt shouldn't even be<br>
> trying to use the system version of python any way?<br>
><br>
> Any help would be much appreciated!<br>
><br>
> Kaylea<br>
><br>
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