<div dir="ltr"><br><div class="gmail_extra"><br><br><div class="gmail_quote">On 6 November 2013 17:04, John Wise <span dir="ltr"><<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">It looks like it's failing when it's making the axes, which might happen when the ymin and ymax are the same.  Could you print out the _xrange and _yrange variables in the axis_box_yt() function in eps_writer.py just before the call to self.axis_box()?<br>

<br>
Does the eps_writer work for non-yt calls?<br>
<br>
<a href="http://paste.yt-project.org/show/4032/" target="_blank">http://paste.yt-project.org/<u></u>show/4032/</a><br>
<br></blockquote><div>No problems here that I can see....<br></div><div> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Does eps_writer work for normal slices and projections?<br>
<br>
You're doing the correct procedure to patch your version.  It doesn't hurt to rerun the install script, but it's unnecessary.  You could have run "python setup.py install" from the yt-hg/ directory instead.<br>

<br>
I hope we can pinpoint the cause of the error soon!<br>
<br>
Cheers,<br>
John<div><div class="h5"><br>
<br>
On 11/06/2013 09:42 AM, John Regan wrote:<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5">
Hey,<br>
<br>
It failed too.<br>
<br>
Traceback (most recent call last):<br>
   File "wise.py", line 9, in <module><br>
     ep.save_fig('test', format='eps')<br>
   File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/src/yt-<u></u>hg/yt/visualization/eps_<u></u>writer.py",<br>
line 779, in save_fig<br>
     self.canvas.writeEPSfile(<u></u>filename)<br>
   File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>canvas.py",<br>
line 48, in wrappedindocument<br>
     return method(d, file, **write_kwargs)<br>
   File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>document.py",<br>
line 165, in writeEPSfile<br>
     pswriter.EPSwriter(self, _outputstream(file, "eps"), **kwargs)<br>
   File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>pswriter.py",<br>
line 140, in __init__<br>
     page.processPS(pagefile, self, acontext, registry, pagebbox)<br>
   File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>document.py",<br>
line 129, in processPS<br>
     self._process("processPS", *args)<br>
   File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>document.py",<br>
line 78, in _process<br>
     bbox.set(self.canvas.bbox()) # this bbox is not accurate<br>
   File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>canvas.py",<br>
line 156, in bbox<br>
     obbox += cmd.bbox()<br>
   File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>graph/graph.py",<br>
line 181, in bbox<br>
     self.finish()<br>
   File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>graph/graph.py",<br>
line 311, in finish<br>
     self.doaxes()<br>
   File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>graph/graph.py",<br>
line 588, in doaxes<br>
     self.dolayout()<br>
   File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>graph/graph.py",<br>
line 572, in dolayout<br>
     self.doaxiscreate(axisname)<br>
   File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>graph/graph.py",<br>
line 248, in doaxiscreate<br>
     self.axes[axisname].create()<br>
   File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>graph/axis/axis.py",<br>
line 586, in create<br>
     self.canvas = self.axis.create(self.data, self.positioner,<br>
self.graphtexrunner, self.errorname)<br>
   File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>graph/axis/axis.py",<br>
line 270, in create<br>
     return _regularaxis._create(self, data, positioner, graphtexrunner,<br>
self.parter, self.rater, errorname)<br>
   File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>graph/axis/axis.py",<br>
line 202, in _create<br>
     raise RuntimeError("no axis partitioning found%s" % errorname)<br>
RuntimeError: no axis partitioning found for axis y2<br>
<br>
<br>
Again on the save(). As I understand YT is set up to be somewhat machine<br>
independent in that all libraries are contained in the YT installation -<br>
in this case the PyX.<br>
I wonder then could there be something in my dev version of YT that is<br>
screwed up.<br>
<br>
Just to confirm what I need to do when I pull down your patch.<br>
<br>
cd .../yt-x86_64/src/yt-hg<br>
hg pull -r 49a5b85 <a href="https://bitbucket.org/jwise77/yt-clean" target="_blank">https://bitbucket.org/jwise77/<u></u>yt-clean</a><br>
hg update<br>
<br>
I then removed the done file and reran the install script. That may not<br>
have been necessary though - I'm not sure.<br>
<br>
Maybe I should try pulling your patch down onto my stable version?<br>
<br>
John<br>
<br>
<br>
<br>
<br>
On 6 November 2013 16:28, John Wise <<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.edu</a><br></div></div><div class="im">
<mailto:<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.<u></u>edu</a>>> wrote:<br>
<br>
    That version should be fine.  I just used that version on my *buntu<br>
    13.10 machine.  It also worked on a 13.04 machine with an old svn<br>
    checkout (before 0.12) of PyX.<br>
<br>
    As a warning, don't use the PyX svn repository because since July or<br>
    August, it's only compatible with Python 3.<br>
<br>
    Could you try this script to see if it works for you?  It works on<br>
    two of my computers.<br>
<br></div>
    <a href="http://paste.yt-project.org/__show/4031/" target="_blank">http://paste.yt-project.org/__<u></u>show/4031/</a><div class="im"><br>
    <<a href="http://paste.yt-project.org/show/4031/" target="_blank">http://paste.yt-project.org/<u></u>show/4031/</a>><br>
<br>
    Thanks,<br>
    John<br>
<br>
<br>
    On 11/06/2013 09:13 AM, John Regan wrote:<br>
<br>
        Version Info:<br>
<br>
        Metadata-Version: 1.1<br>
        Name: PyX<br>
        Version: 0.12.1<br>
        Summary: Python package for the generation of PostScript and PDF<br>
        files<br>
        Home-page: <a href="http://pyx.sourceforge.net/" target="_blank">http://pyx.sourceforge.net/</a><br>
        Author: Jörg Lehmann, André Wobst<br>
<br>
<br>
        Maybe an upgrade is needed?<br>
<br>
<br>
        On 6 November 2013 16:09, John Wise <<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.edu</a><br>
        <mailto:<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.<u></u>edu</a>><br></div><div class="im">
        <mailto:<a href="mailto:jwise@physics.gatech." target="_blank">jwise@physics.gatech.</a>_<u></u>_edu<br>
        <mailto:<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.<u></u>edu</a>>>> wrote:<br>
<br>
             Hi John,<br>
<br></div><div class="im">
             Which version of PyX are you running?<br>
<br>
             Thanks,<br>
             John<br>
<br>
<br>
             On 11/06/2013 09:08 AM, John Regan wrote:<br>
<br>
                 Hi John,<br>
<br>
                 I pulled down your update onto my Dev installation and<br>
        ran it.<br>
                 The eps<br>
                 writer now successfully takes as input the plot window<br>
        but fails on<br>
                 saving the plot.<br>
                 Any ideas? The error is below.<br>
<br>
                 Cheers,<br>
                 John<br>
<br>
<br>
<br>
<br>
                 Traceback (most recent call last):<br>
                     File<br>
<br></div>
        "/homeappl/home/regan/appl____<u></u>_taito/YT/Dev/yt-x86_64/lib/__<u></u>__python2.7/threading.py",<div class="im"><br>
<br>
                 line 810, in __bootstrap_inner<br>
                       self.run()<br>
                     File<br>
<br></div>
        "/homeappl/home/regan/appl____<u></u>_taito/YT/Dev/yt-x86_64/lib/__<u></u>__python2.7/site-packages/pyx/<u></u>____text.py",<div class="im"><br>
<br>
                 line 663, in run<br>
                       raise RuntimeError("TeX/LaTeX finished unexpectedly")<br>
                 RuntimeError: TeX/LaTeX finished unexpectedly<br>
<br>
                 still waiting for tex after 5 (of 60) seconds...<br>
                 still waiting for tex after 10 (of 60) seconds...<br>
                 still waiting for tex after 15 (of 60) seconds...<br>
                 still waiting for tex after 20 (of 60) seconds...<br>
                 still waiting for tex after 25 (of 60) seconds...<br>
                 still waiting for tex after 30 (of 60) seconds...<br>
                 still waiting for tex after 35 (of 60) seconds...<br>
                 still waiting for tex after 40 (of 60) seconds...<br>
                 still waiting for tex after 45 (of 60) seconds...<br>
                 still waiting for tex after 50 (of 60) seconds...<br>
                 still waiting for tex after 55 (of 60) seconds...<br>
                 the timeout of 60 seconds expired and tex did not respond.<br>
                 We try to finish the dvi due to an unhandled tex error<br>
                 Traceback (most recent call last):<br>
                     File "OffAxisProjection.py", line 74, in <module><br>
                       ep.save_fig("test", format="eps")<br>
                     File<br>
<br></div>
        "/homeappl/home/regan/appl____<u></u>_taito/YT/Dev/yt-x86_64/src/<u></u>yt-____hg/yt/visualization/<u></u>eps_____writer.py",<br>
                 line 779, in save_fig<br>
                       self.canvas.writeEPSfile(____<u></u>filename)<div class="im"><br>
<br>
<br>
<br>
                 On 5 November 2013 22:44, John Wise<br>
        <<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.edu</a> <mailto:<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.<u></u>edu</a>><br>
                 <mailto:<a href="mailto:jwise@physics.gatech." target="_blank">jwise@physics.gatech.</a>_<u></u>_edu<br>
        <mailto:<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.<u></u>edu</a>>><br></div>
                 <mailto:<a href="mailto:jwise@physics.gatech" target="_blank">jwise@physics.gatech</a>.<br>
        <mailto:<a href="mailto:jwise@physics.gatech" target="_blank">jwise@physics.gatech</a>.><u></u>____edu<div class="im"><br>
<br>
                 <mailto:<a href="mailto:jwise@physics.gatech." target="_blank">jwise@physics.gatech.</a>_<u></u>_edu<br>
        <mailto:<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.<u></u>edu</a>>>>> wrote:<br>
<br>
                      Hi John,<br>
<br>
                      Thanks for bringing this to our attention.  I've<br>
        done the same<br>
                      workaround with eps_writer before, and it's a<br>
        pain!  It<br>
                 seems like<br>
                      the eps_writer was never compatible with off-axis<br>
        projections.<br>
                        Plus, it hasn't been updated to be compatible with<br>
                 PlotWindows.<br>
<br>
                      I've made the necessary changes to eps_writer so<br>
        it works<br>
                 with plot<br>
                      windows now.  I've tested it with slices,<br>
        projections, off-axis<br>
                      projections, and phase plots, and they now work as<br>
        desired.<br>
<br>
                      I've submitted a PR, but if you want to test it<br>
        out before it's<br>
                      merged, please go ahead!<br>
<br>
                      hg pull -r 49a5b85<br></div>
        <a href="https://bitbucket.org/jwise77/______yt-clean" target="_blank">https://bitbucket.org/jwise77/<u></u>______yt-clean</a><br>
        <<a href="https://bitbucket.org/jwise77/____yt-clean" target="_blank">https://bitbucket.org/<u></u>jwise77/____yt-clean</a>><br>
                 <<a href="https://bitbucket.org/__jwise77/__yt-clean" target="_blank">https://bitbucket.org/__<u></u>jwise77/__yt-clean</a><br>
        <<a href="https://bitbucket.org/jwise77/__yt-clean" target="_blank">https://bitbucket.org/<u></u>jwise77/__yt-clean</a>>><br>
<br>
                      <<a href="https://bitbucket.org/____jwise77/yt-clean" target="_blank">https://bitbucket.org/____<u></u>jwise77/yt-clean</a><br>
        <<a href="https://bitbucket.org/__jwise77/yt-clean" target="_blank">https://bitbucket.org/__<u></u>jwise77/yt-clean</a>><div><div class="h5"><br>
<br>
                 <<a href="https://bitbucket.org/__jwise77/yt-clean" target="_blank">https://bitbucket.org/__<u></u>jwise77/yt-clean</a><br>
        <<a href="https://bitbucket.org/jwise77/yt-clean" target="_blank">https://bitbucket.org/<u></u>jwise77/yt-clean</a>>>><br>
                      hg update<br>
<br>
                      Let me know if this works for you.<br>
<br>
                      Cheers,<br>
                      John<br>
<br>
<br>
                      On 11/05/2013 10:13 AM, John Regan wrote:<br>
<br>
                          Hi All,<br>
<br>
<br>
                          I've been playing with the eps interface a<br>
        little to<br>
                 decorate some<br>
                          plots. It's a very nice feature but I haven't<br>
        been able<br>
                 to get in to<br>
                          work with the output from<br>
        OffAxisProjectionPlot() or<br>
                          off_axis_projection(). Basically I call one of<br>
        these<br>
                 functions,<br>
                          produce<br>
                          a nice projection and would like to pass that<br>
        object to<br>
                          eps.single_plot<br>
                          and make some modifications.<br>
<br>
                          The problem is that PWViewrMPL object has no<br>
        colorbar<br>
                 attribute<br>
                          and so<br>
                          when insert_image_yt() gets called the script<br>
        fails as<br>
                 it tries to<br>
                          access this attribute. I can workaround the<br>
        issue by<br>
                 creating the<br>
                          projection and converting the image to jpg and<br>
        passing<br>
                 the jpg<br>
                          image to<br>
                          insert_image() and it works great but it's not<br>
        very<br>
                 clean. It<br>
                          would be<br>
                          nice to pass the PWViewrMPL object in somehow.<br>
<br>
                          Just wondering if another wrapper function is<br>
        needed or<br>
                 if there<br>
                          is an<br>
                          even easier way that I am missing.<br>
<br>
                          Cheers,<br>
                          John<br>
<br>
<br>
<br></div></div>
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                      John Wise<br>
                      Assistant Professor of Physics<br>
                      Center for Relativistic Astrophysics, Georgia Tech<br>
        <a href="http://cosmo.gatech.edu" target="_blank">http://cosmo.gatech.edu</a><br></div>
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             --<br>
             John Wise<br>
             Assistant Professor of Physics<br>
             Center for Relativistic Astrophysics, Georgia Tech<br>
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    --<br>
    John Wise<br>
    Assistant Professor of Physics<br>
    Center for Relativistic Astrophysics, Georgia Tech<br>
    <a href="http://cosmo.gatech.edu" target="_blank">http://cosmo.gatech.edu</a><br>
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</div></div></blockquote><div class="HOEnZb"><div class="h5">
<br>
-- <br>
John Wise<br>
Assistant Professor of Physics<br>
Center for Relativistic Astrophysics, Georgia Tech<br>
<a href="http://cosmo.gatech.edu" target="_blank">http://cosmo.gatech.edu</a><br>
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