<div dir="ltr"><br><div class="gmail_extra"><br><br><div class="gmail_quote">On 6 November 2013 17:04, John Wise <span dir="ltr"><<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">It looks like it's failing when it's making the axes, which might happen when the ymin and ymax are the same. Could you print out the _xrange and _yrange variables in the axis_box_yt() function in eps_writer.py just before the call to self.axis_box()?<br>
<br>
Does the eps_writer work for non-yt calls?<br>
<br>
<a href="http://paste.yt-project.org/show/4032/" target="_blank">http://paste.yt-project.org/<u></u>show/4032/</a><br>
<br></blockquote><div>No problems here that I can see....<br></div><div> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Does eps_writer work for normal slices and projections?<br>
<br>
You're doing the correct procedure to patch your version. It doesn't hurt to rerun the install script, but it's unnecessary. You could have run "python setup.py install" from the yt-hg/ directory instead.<br>
<br>
I hope we can pinpoint the cause of the error soon!<br>
<br>
Cheers,<br>
John<div><div class="h5"><br>
<br>
On 11/06/2013 09:42 AM, John Regan wrote:<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5">
Hey,<br>
<br>
It failed too.<br>
<br>
Traceback (most recent call last):<br>
File "wise.py", line 9, in <module><br>
ep.save_fig('test', format='eps')<br>
File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/src/yt-<u></u>hg/yt/visualization/eps_<u></u>writer.py",<br>
line 779, in save_fig<br>
self.canvas.writeEPSfile(<u></u>filename)<br>
File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>canvas.py",<br>
line 48, in wrappedindocument<br>
return method(d, file, **write_kwargs)<br>
File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>document.py",<br>
line 165, in writeEPSfile<br>
pswriter.EPSwriter(self, _outputstream(file, "eps"), **kwargs)<br>
File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>pswriter.py",<br>
line 140, in __init__<br>
page.processPS(pagefile, self, acontext, registry, pagebbox)<br>
File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>document.py",<br>
line 129, in processPS<br>
self._process("processPS", *args)<br>
File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>document.py",<br>
line 78, in _process<br>
bbox.set(self.canvas.bbox()) # this bbox is not accurate<br>
File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>canvas.py",<br>
line 156, in bbox<br>
obbox += cmd.bbox()<br>
File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>graph/graph.py",<br>
line 181, in bbox<br>
self.finish()<br>
File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>graph/graph.py",<br>
line 311, in finish<br>
self.doaxes()<br>
File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>graph/graph.py",<br>
line 588, in doaxes<br>
self.dolayout()<br>
File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>graph/graph.py",<br>
line 572, in dolayout<br>
self.doaxiscreate(axisname)<br>
File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>graph/graph.py",<br>
line 248, in doaxiscreate<br>
self.axes[axisname].create()<br>
File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>graph/axis/axis.py",<br>
line 586, in create<br>
self.canvas = self.axis.create(self.data, self.positioner,<br>
self.graphtexrunner, self.errorname)<br>
File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>graph/axis/axis.py",<br>
line 270, in create<br>
return _regularaxis._create(self, data, positioner, graphtexrunner,<br>
self.parter, self.rater, errorname)<br>
File<br>
"/homeappl/home/regan/appl_<u></u>taito/YT/Dev/yt-x86_64/lib/<u></u>python2.7/site-packages/pyx/<u></u>graph/axis/axis.py",<br>
line 202, in _create<br>
raise RuntimeError("no axis partitioning found%s" % errorname)<br>
RuntimeError: no axis partitioning found for axis y2<br>
<br>
<br>
Again on the save(). As I understand YT is set up to be somewhat machine<br>
independent in that all libraries are contained in the YT installation -<br>
in this case the PyX.<br>
I wonder then could there be something in my dev version of YT that is<br>
screwed up.<br>
<br>
Just to confirm what I need to do when I pull down your patch.<br>
<br>
cd .../yt-x86_64/src/yt-hg<br>
hg pull -r 49a5b85 <a href="https://bitbucket.org/jwise77/yt-clean" target="_blank">https://bitbucket.org/jwise77/<u></u>yt-clean</a><br>
hg update<br>
<br>
I then removed the done file and reran the install script. That may not<br>
have been necessary though - I'm not sure.<br>
<br>
Maybe I should try pulling your patch down onto my stable version?<br>
<br>
John<br>
<br>
<br>
<br>
<br>
On 6 November 2013 16:28, John Wise <<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.edu</a><br></div></div><div class="im">
<mailto:<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.<u></u>edu</a>>> wrote:<br>
<br>
That version should be fine. I just used that version on my *buntu<br>
13.10 machine. It also worked on a 13.04 machine with an old svn<br>
checkout (before 0.12) of PyX.<br>
<br>
As a warning, don't use the PyX svn repository because since July or<br>
August, it's only compatible with Python 3.<br>
<br>
Could you try this script to see if it works for you? It works on<br>
two of my computers.<br>
<br></div>
<a href="http://paste.yt-project.org/__show/4031/" target="_blank">http://paste.yt-project.org/__<u></u>show/4031/</a><div class="im"><br>
<<a href="http://paste.yt-project.org/show/4031/" target="_blank">http://paste.yt-project.org/<u></u>show/4031/</a>><br>
<br>
Thanks,<br>
John<br>
<br>
<br>
On 11/06/2013 09:13 AM, John Regan wrote:<br>
<br>
Version Info:<br>
<br>
Metadata-Version: 1.1<br>
Name: PyX<br>
Version: 0.12.1<br>
Summary: Python package for the generation of PostScript and PDF<br>
files<br>
Home-page: <a href="http://pyx.sourceforge.net/" target="_blank">http://pyx.sourceforge.net/</a><br>
Author: Jörg Lehmann, André Wobst<br>
<br>
<br>
Maybe an upgrade is needed?<br>
<br>
<br>
On 6 November 2013 16:09, John Wise <<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.edu</a><br>
<mailto:<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.<u></u>edu</a>><br></div><div class="im">
<mailto:<a href="mailto:jwise@physics.gatech." target="_blank">jwise@physics.gatech.</a>_<u></u>_edu<br>
<mailto:<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.<u></u>edu</a>>>> wrote:<br>
<br>
Hi John,<br>
<br></div><div class="im">
Which version of PyX are you running?<br>
<br>
Thanks,<br>
John<br>
<br>
<br>
On 11/06/2013 09:08 AM, John Regan wrote:<br>
<br>
Hi John,<br>
<br>
I pulled down your update onto my Dev installation and<br>
ran it.<br>
The eps<br>
writer now successfully takes as input the plot window<br>
but fails on<br>
saving the plot.<br>
Any ideas? The error is below.<br>
<br>
Cheers,<br>
John<br>
<br>
<br>
<br>
<br>
Traceback (most recent call last):<br>
File<br>
<br></div>
"/homeappl/home/regan/appl____<u></u>_taito/YT/Dev/yt-x86_64/lib/__<u></u>__python2.7/threading.py",<div class="im"><br>
<br>
line 810, in __bootstrap_inner<br>
self.run()<br>
File<br>
<br></div>
"/homeappl/home/regan/appl____<u></u>_taito/YT/Dev/yt-x86_64/lib/__<u></u>__python2.7/site-packages/pyx/<u></u>____text.py",<div class="im"><br>
<br>
line 663, in run<br>
raise RuntimeError("TeX/LaTeX finished unexpectedly")<br>
RuntimeError: TeX/LaTeX finished unexpectedly<br>
<br>
still waiting for tex after 5 (of 60) seconds...<br>
still waiting for tex after 10 (of 60) seconds...<br>
still waiting for tex after 15 (of 60) seconds...<br>
still waiting for tex after 20 (of 60) seconds...<br>
still waiting for tex after 25 (of 60) seconds...<br>
still waiting for tex after 30 (of 60) seconds...<br>
still waiting for tex after 35 (of 60) seconds...<br>
still waiting for tex after 40 (of 60) seconds...<br>
still waiting for tex after 45 (of 60) seconds...<br>
still waiting for tex after 50 (of 60) seconds...<br>
still waiting for tex after 55 (of 60) seconds...<br>
the timeout of 60 seconds expired and tex did not respond.<br>
We try to finish the dvi due to an unhandled tex error<br>
Traceback (most recent call last):<br>
File "OffAxisProjection.py", line 74, in <module><br>
ep.save_fig("test", format="eps")<br>
File<br>
<br></div>
"/homeappl/home/regan/appl____<u></u>_taito/YT/Dev/yt-x86_64/src/<u></u>yt-____hg/yt/visualization/<u></u>eps_____writer.py",<br>
line 779, in save_fig<br>
self.canvas.writeEPSfile(____<u></u>filename)<div class="im"><br>
<br>
<br>
<br>
On 5 November 2013 22:44, John Wise<br>
<<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.edu</a> <mailto:<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.<u></u>edu</a>><br>
<mailto:<a href="mailto:jwise@physics.gatech." target="_blank">jwise@physics.gatech.</a>_<u></u>_edu<br>
<mailto:<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.<u></u>edu</a>>><br></div>
<mailto:<a href="mailto:jwise@physics.gatech" target="_blank">jwise@physics.gatech</a>.<br>
<mailto:<a href="mailto:jwise@physics.gatech" target="_blank">jwise@physics.gatech</a>.><u></u>____edu<div class="im"><br>
<br>
<mailto:<a href="mailto:jwise@physics.gatech." target="_blank">jwise@physics.gatech.</a>_<u></u>_edu<br>
<mailto:<a href="mailto:jwise@physics.gatech.edu" target="_blank">jwise@physics.gatech.<u></u>edu</a>>>>> wrote:<br>
<br>
Hi John,<br>
<br>
Thanks for bringing this to our attention. I've<br>
done the same<br>
workaround with eps_writer before, and it's a<br>
pain! It<br>
seems like<br>
the eps_writer was never compatible with off-axis<br>
projections.<br>
Plus, it hasn't been updated to be compatible with<br>
PlotWindows.<br>
<br>
I've made the necessary changes to eps_writer so<br>
it works<br>
with plot<br>
windows now. I've tested it with slices,<br>
projections, off-axis<br>
projections, and phase plots, and they now work as<br>
desired.<br>
<br>
I've submitted a PR, but if you want to test it<br>
out before it's<br>
merged, please go ahead!<br>
<br>
hg pull -r 49a5b85<br></div>
<a href="https://bitbucket.org/jwise77/______yt-clean" target="_blank">https://bitbucket.org/jwise77/<u></u>______yt-clean</a><br>
<<a href="https://bitbucket.org/jwise77/____yt-clean" target="_blank">https://bitbucket.org/<u></u>jwise77/____yt-clean</a>><br>
<<a href="https://bitbucket.org/__jwise77/__yt-clean" target="_blank">https://bitbucket.org/__<u></u>jwise77/__yt-clean</a><br>
<<a href="https://bitbucket.org/jwise77/__yt-clean" target="_blank">https://bitbucket.org/<u></u>jwise77/__yt-clean</a>>><br>
<br>
<<a href="https://bitbucket.org/____jwise77/yt-clean" target="_blank">https://bitbucket.org/____<u></u>jwise77/yt-clean</a><br>
<<a href="https://bitbucket.org/__jwise77/yt-clean" target="_blank">https://bitbucket.org/__<u></u>jwise77/yt-clean</a>><div><div class="h5"><br>
<br>
<<a href="https://bitbucket.org/__jwise77/yt-clean" target="_blank">https://bitbucket.org/__<u></u>jwise77/yt-clean</a><br>
<<a href="https://bitbucket.org/jwise77/yt-clean" target="_blank">https://bitbucket.org/<u></u>jwise77/yt-clean</a>>>><br>
hg update<br>
<br>
Let me know if this works for you.<br>
<br>
Cheers,<br>
John<br>
<br>
<br>
On 11/05/2013 10:13 AM, John Regan wrote:<br>
<br>
Hi All,<br>
<br>
<br>
I've been playing with the eps interface a<br>
little to<br>
decorate some<br>
plots. It's a very nice feature but I haven't<br>
been able<br>
to get in to<br>
work with the output from<br>
OffAxisProjectionPlot() or<br>
off_axis_projection(). Basically I call one of<br>
these<br>
functions,<br>
produce<br>
a nice projection and would like to pass that<br>
object to<br>
eps.single_plot<br>
and make some modifications.<br>
<br>
The problem is that PWViewrMPL object has no<br>
colorbar<br>
attribute<br>
and so<br>
when insert_image_yt() gets called the script<br>
fails as<br>
it tries to<br>
access this attribute. I can workaround the<br>
issue by<br>
creating the<br>
projection and converting the image to jpg and<br>
passing<br>
the jpg<br>
image to<br>
insert_image() and it works great but it's not<br>
very<br>
clean. It<br>
would be<br>
nice to pass the PWViewrMPL object in somehow.<br>
<br>
Just wondering if another wrapper function is<br>
needed or<br>
if there<br>
is an<br>
even easier way that I am missing.<br>
<br>
Cheers,<br>
John<br>
<br>
<br>
<br></div></div>
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<br>
<br>
--<br>
John Wise<br>
Assistant Professor of Physics<br>
Center for Relativistic Astrophysics, Georgia Tech<br>
<a href="http://cosmo.gatech.edu" target="_blank">http://cosmo.gatech.edu</a><br></div>
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Center for Relativistic Astrophysics, Georgia Tech<br>
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--<br>
John Wise<br>
Assistant Professor of Physics<br>
Center for Relativistic Astrophysics, Georgia Tech<br>
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</div></div></blockquote><div class="HOEnZb"><div class="h5">
<br>
-- <br>
John Wise<br>
Assistant Professor of Physics<br>
Center for Relativistic Astrophysics, Georgia Tech<br>
<a href="http://cosmo.gatech.edu" target="_blank">http://cosmo.gatech.edu</a><br>
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