<div dir="ltr">Hi Mark,<div><br></div><div>Take a look at this issue: <a href="https://github.com/ipython/ipython/issues/4177">https://github.com/ipython/ipython/issues/4177</a></div><div><br></div><div>It looks like updating yt's dependencies left the old version of IPython behind. You should be able to get rid of it by doing `pip remove IPython` and then `pip install IPython`.</div>
<div><br></div><div>That will get you IPython 1.1, which we should also add to the install script when we add jinja2.</div><div><br></div><div>-Nathan</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">
On Wed, Sep 18, 2013 at 2:51 PM, Mark Krumholz <span dir="ltr"><<a href="mailto:mkrumhol@ucsc.edu" target="_blank">mkrumhol@ucsc.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class="im"><br>
On Sep 18, 2013, at 2:42 PM, Matthew Turk wrote:<br>
<br>
> Hi Mark,<br>
><br>
> pip install jinja2<br>
><br>
> should fix it. I think we missed that in our dependency stack, but I<br>
> will add it to the install script.<br>
><br>
> Thanks for the report!<br>
><br>
> -Matt<br>
<br>
<br>
</div>Hi Matt,<br>
<br>
That helps, but still doesn't let me run. I tried your suggestion, and jinja2 seems to build, though it throws a bunch of warning messages:<br>
<br>
(yt-x86_64)pfe20:hmc3_mhd_lowden mkrumhol$ pip install jinja2<br>
Downloading/unpacking jinja2<br>
Downloading Jinja2-2.7.1.tar.gz (377kB): 377kB downloaded<br>
Running setup.py egg_info for package jinja2<br>
<br>
warning: no files found matching '*' under directory 'custom_fixers'<br>
warning: no previously-included files matching '*' found under directory 'docs/_build'<br>
warning: no previously-included files matching '*.pyc' found under directory 'jinja2'<br>
warning: no previously-included files matching '*.pyc' found under directory 'docs'<br>
warning: no previously-included files matching '*.pyo' found under directory 'jinja2'<br>
warning: no previously-included files matching '*.pyo' found under directory 'docs'<br>
Downloading/unpacking markupsafe (from jinja2)<br>
Downloading MarkupSafe-0.18.tar.gz<br>
Running setup.py egg_info for package markupsafe<br>
<br>
Installing collected packages: jinja2, markupsafe<br>
Running setup.py install for jinja2<br>
<br>
warning: no files found matching '*' under directory 'custom_fixers'<br>
warning: no previously-included files matching '*' found under directory 'docs/_build'<br>
warning: no previously-included files matching '*.pyc' found under directory 'jinja2'<br>
warning: no previously-included files matching '*.pyc' found under directory 'docs'<br>
warning: no previously-included files matching '*.pyo' found under directory 'jinja2'<br>
warning: no previously-included files matching '*.pyo' found under directory 'docs'<br>
Running setup.py install for markupsafe<br>
<br>
building 'markupsafe._speedups' extension<br>
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/u/mkrumhol/yt-x86_64/include/python2.7 -c markupsafe/_speedups.c -o build/temp.linux-x86_64-2.7/markupsafe/_speedups.o<br>
gcc -pthread -shared -L/u/mkrumhol/yt-x86_64/lib/ -L/u/mkrumhol/yt-x86_64/lib64/ -L/u/mkrumhol/yt-x86_64/lib/ -L/u/mkrumhol/yt-x86_64/lib64/ -L/u/mkrumhol/yt-x86_64/lib/ -L/u/mkrumhol/yt-x86_64/lib64/ -L/u/mkrumhol/yt-x86_64/lib/ -L/u/mkrumhol/yt-x86_64/lib64/ build/temp.linux-x86_64-2.7/markupsafe/_speedups.o -o build/lib.linux-x86_64-2.7/markupsafe/_speedups.so<br>
Successfully installed jinja2 markupsafe<br>
Cleaning up...<br>
<br>
<br>
So far so good. Then I can then start the ipython notebook and get further than I did before, but I again get a crash:<br>
<div class="im"><br>
(yt-x86_64)pfe20:hmc3_mhd_lowden mkrumhol$ ipython notebook --no-browser --port=51707<br>
</div>2013-09-18 14:47:12.782 [NotebookApp] Using existing profile dir: u'/home3/mkrumhol/.ipython/profile_default'<br>
2013-09-18 14:47:12.956 [NotebookApp] Using MathJax from CDN: <a href="http://cdn.mathjax.org/mathjax/latest/MathJax.js" target="_blank">http://cdn.mathjax.org/mathjax/latest/MathJax.js</a><br>
2013-09-18 14:47:12.998 [NotebookApp] The port 51707 is already in use, trying another random port.<br>
2013-09-18 14:47:12.998 [NotebookApp] The port 51708 is already in use, trying another random port.<br>
2013-09-18 14:47:12.998 [NotebookApp] Serving notebooks from local directory: /nobackupp8/mkrumhol/hmc3_mhd_lowden<br>
2013-09-18 14:47:12.998 [NotebookApp] The IPython Notebook is running at: <a href="http://127.0.0.1:51709/
2013-09-18" target="_blank">http://127.0.0.1:51709/<br>
2013-09-18</a> 14:47:12.999 [NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).<br>
[NotebookApp] Kernel started: 5434ad94-81be-46ad-80e1-fa9a820411f8<br>
[NotebookApp] Connecting to: tcp://<a href="http://127.0.0.1:37756" target="_blank">127.0.0.1:37756</a><br>
[NotebookApp] Connecting to: tcp://<a href="http://127.0.0.1:57662" target="_blank">127.0.0.1:57662</a><br>
[NotebookApp] Connecting to: tcp://<a href="http://127.0.0.1:38185" target="_blank">127.0.0.1:38185</a><br>
<div class="im">Traceback (most recent call last):<br>
</div> File "<string>", line 1, in <module><br>
File "/u/mkrumhol/yt-x86_64/lib/python2.7/site-packages/IPython/zmq/ipkernel.py", line 55, in <module><br>
from serialize import serialize_object, unpack_apply_message<br>
File "/u/mkrumhol/yt-x86_64/lib/python2.7/site-packages/IPython/zmq/serialize.py", line 35, in <module><br>
from IPython.utils.pickleutil import can, uncan, canSequence, uncanSequence<br>
ImportError: cannot import name canSequence<br>
<div class="HOEnZb"><div class="h5"><br>
--<br>
Mark Krumholz<br>
<br>
<br>
<br>
<br>
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</div></div></blockquote></div><br></div>