<div dir="ltr">Hi Stephanie,<div><br></div><div>Thanks very much for the detailed and conscientious reports. </div><div><br></div><div>The first issue is an upstream issue with the zeromq release (3.2.3) we distribute: <a href="https://github.com/zeromq/zeromq3-x/issues/103">https://github.com/zeromq/zeromq3-x/issues/103</a>. As you saw, it can be fixed by adding the needed newline. I've reported an issue about this on our issue tracker (<a href="https://bitbucket.org/yt_analysis/yt/issue/641/zeromq-323-release-tarball-has-a-small">https://bitbucket.org/yt_analysis/yt/issue/641/zeromq-323-release-tarball-has-a-small</a>), it should hopefully be fixed soon so others will not have the same issue.</div>
<div><br></div><div>The second issue is due to a benign typo in the install script. I've opened a PR to fix it: <a href="https://bitbucket.org/yt_analysis/yt/pull-request/582/fixing-a-benign-typo-in-the-install-script/diff">https://bitbucket.org/yt_analysis/yt/pull-request/582/fixing-a-benign-typo-in-the-install-script/diff</a>.</div>
<div><br></div><div>Cheers,</div><div><br></div><div>Nathan Goldbaum</div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Wed, Aug 28, 2013 at 7:34 PM, Stephanie Tonnesen <span dir="ltr"><<a href="mailto:stonnes@gmail.com" target="_blank">stonnes@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>Okay! Thanks for all the help, the new installation loaded yt.mods for me (other checks will have to wait for tomorrow)! <br>
<br>For anyone who is interested, here are two things I thought were sort of strange in the installation:<br>
<br>1) on my first attempt at bash install_script.sh, the installation failed with the message below:<br><br>Installing BZLIB<br>Installing ZLIB<br>Installing PNG<br>Installing FreeType2<br>Installing HDF5<br>Installing SQLite3<br>
Installing Python. This may take a while, but don't worry. yt loves you.<br>Installing mercurial-2.7<br>
Setting YT_DIR=/u/stonnes/Installs/yt-x86_64/src/yt-hg/<br>Installing distribute<br>Installing pip<br>Installing numpy-1.7.1<br>Installing matplotlib-1.3.0<br>Installing ZeroMQ<br>********************************************<br>
FAILURE REPORT:<br>********************************************<br><br> CXXLD test_invalid_rep<br> CXX test_msg_flags.o<br> CXXLD test_msg_flags<br> CXX test_connect_resolve.o<br> CXXLD test_connect_resolve<br>
CXX test_connect_delay.o<br>test_connect_delay.cpp:260:2: error: no newline at end of file<br>make[1]: *** [test_connect_delay.o] Error 1<br>make[1]: Leaving directory `/u/stonnes/Installs/yt-x86_64/src/zeromq-3.2.3/tests'<br>
make: *** [install-recursive] Error 1<br><br>********************************************<br>********************************************<br>Failure. Check /u/stonnes/Installs/yt-x86_64/yt_install.log. The last 10 lines are above.<br>
<br>This was easily fixed by just adding a line at the end of the file. I am not sure if it was my computer that was the problem, or if a recent change is going to make this fail for other people, too.<br><br></div>2) This initial set-up list looks normal, but it seems strange that for *almost* everything =1 means the installation will happen, EXCEPT Rockstar.<br>
<br><div>INST_ZLIB = 1 so I will be installing zlib<br>INST_BZLIB = 1 so I will be installing bzlib<br>INST_PNG = 1 so I will be installing libpng<br>INST_FTYPE = 1 so I will be installing freetype2<br>
INST_SQLITE3 = 1 so I will be installing SQLite3<br>INST_HG = 1 so I will be installing Mercurial<br>INST_ENZO = 0 so I won't be checking out Enzo<br>INST_PYX = 0 so I won't be installing PyX<br>
INST_SCIPY = 0 so I won't be installing scipy<br>INST_0MQ = 1 so I will be installing ZeroMQ<br>INST_ROCKSTAR = 0 so I will be installing Rockstar<span class="HOEnZb"><font color="#888888"><br><br><br>
</font></span></div><span class="HOEnZb"><font color="#888888"><div>-Stephanie<br></div></font></span></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra">
<br><br><div class="gmail_quote">On Wed, Aug 28, 2013 at 9:25 PM, j s oishi <span dir="ltr"><<a href="mailto:jsoishi@gmail.com" target="_blank">jsoishi@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div dir="ltr">Yup, that's exactly where it goes. <span><font color="#888888"><div><br></div><div>j</div></font></span></div><div><div><div class="gmail_extra"><br><br><div class="gmail_quote">
On Wed, Aug 28, 2013 at 9:24 PM, Stephanie Tonnesen <span dir="ltr"><<a href="mailto:stonnes@gmail.com" target="_blank">stonnes@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div>Actually, another question then about rerunning a new copy of the install script. Where do I put it to run it again? right now my file structure looks like <br>
<br></div><div>/u/stonnes/Installs/yt-x86_64/<br>
</div><div>bin/<br></div><div>include/<br></div><div>lib/<br></div><div>man/<br></div><div>share/<br>src/<br></div><div>yt_install.log<br><br></div><div>do I put the new install_script.sh in Installs/ ?<br><br></div><div>
Thanks again,<br><br></div><div>Stephanie<br></div></div><div><div><div class="gmail_extra"><br><br><div class="gmail_quote">On Wed, Aug 28, 2013 at 9:14 PM, Stephanie Tonnesen <span dir="ltr"><<a href="mailto:stonnes@gmail.com" target="_blank">stonnes@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div><div><div>So running yt update --all did not work, unfortunately. It still gives me the error:<br>
<br></div>ImportError: No module names write_array<br><br></div>Looks like I might have to run a new copy of the install script.<br>
<br></div>Thanks!<span><font color="#888888"><br><br></font></span></div><span><font color="#888888">Stephanie<br></font></span></div><div><div><div class="gmail_extra">
<br><br><div class="gmail_quote">On Wed, Aug 28, 2013 at 4:40 PM, Matthew Turk <span dir="ltr"><<a href="mailto:matthewturk@gmail.com" target="_blank">matthewturk@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Stephanie,<br>
<br>
Looks to me like write_array is not accessible anymore, which is<br>
breaking the "yt" command. (This is a problem we should address.) At<br>
worst, you may need to re-run a new copy of the install script; you<br>
can do this over top of the old one, or remove and start anew.<br>
<br>
We have some packaging plans under way right now that will reduce the<br>
importance of the install script and the "yt update" command. But<br>
more on that as they are available!<br>
<br>
-Matt<br>
<div><div><br>
On Wed, Aug 28, 2013 at 3:55 PM, Stephanie Tonnesen <<a href="mailto:stonnes@gmail.com" target="_blank">stonnes@gmail.com</a>> wrote:<br>
> Dear all,<br>
><br>
> After a pretty long (few month) hiatus, I just tried to update my yt and<br>
> seem to have broken it.<br>
><br>
> Now my desktop is frozen so I can't cut and paste the long outputs, but it<br>
> boils down to:<br>
><br>
>>yt update<br>
><br>
><br>
> The current version of the code is:<br>
><br>
> ___<br>
> 0be45301e0eb (yt) tip<br>
> ___<br>
><br>
> This version CAN be automatically updated.<br>
><br>
> ....<br>
> added 1740 changesets with 3520 changes to 355 files (+1 heads)<br>
> Updating the repository<br>
> 126 files updates, 0 files merged, 0 files removed, 0 files unresolved<br>
> BROKEN: See /u/stonnes/Installs/yt-x86_64/src/yt-hg/yt_updater.log<br>
><br>
> So I looked at that<br>
><br>
> and the first thing it had was:<br>
> pulling from <a href="https://bitbucket.org/yt_analysis/yt/" target="_blank">https://bitbucket.org/yt_analysis/yt/</a><br>
> (run 'hg update' to get a working copy)<br>
><br>
> So I ran hg update and then it failed and said I had no module named<br>
> write_array<br>
><br>
> When I start python2.7<br>
><br>
> and type<br>
>>> from yt.mods import *<br>
><br>
> I get the same error (no module write_array)<br>
><br>
> Any advice would be appreciated!<br>
><br>
> Thanks,<br>
><br>
> Stephanie<br>
><br>
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