<div dir="ltr">Oh sorry, forgot to actually copy the new package over to 12.10 and 13.04. *Now* it should work. If not, then let's take this offline and figure it out there.<div><br></div><div>Mike</div></div><div class="gmail_extra">
<br><br><div class="gmail_quote">On Tue, Jun 4, 2013 at 9:01 AM, Nathan Goldbaum <span dir="ltr"><<a href="mailto:nathan12343@gmail.com" target="_blank">nathan12343@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hey Mike,<div><br></div><div>I'm still seeing the same error from last night. Should I wait a bit longer for the package to rebuild?</div><span class="HOEnZb"><font color="#888888"><div><br></div></font></span><div><span class="HOEnZb"><font color="#888888">Nathan</font></span><div>
<div class="h5"><span></span><br><br>On Tuesday, June 4, 2013, Michael Kuhlen wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi Nathan <div><br></div><div>Thanks for the report. Going from 12.04 to 12.10 the HDF5 library was apparently renamed to libhdf5-7, instead of libhdf5-serial-1.8.4. I've added libhdf5-7 as an alternative install dependency. The package is rebuilding on launchpad right now. Could you please try again once it's done (probably in a couple of hours)?<div>
<br></div><div>Thanks, </div><div><br></div><div>Mike</div></div><div><br><br><div>On Mon, Jun 3, 2013 at 10:05 PM, Nathan Goldbaum <span dir="ltr"><<a>nathan12343@gmail.com</a>></span> wrote:<br>
<blockquote style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hey Mike,<div><br></div><div>Looks like it fails on 13.04. FWIW, the serial hdf5 package appears to be called libhdf5-7. If anyone else has success, let me know, it's possible I'm doing something silly.</div>
<div><br></div><div>-Nathan</div><div><br></div><div>$ sudo apt-get install yt</div><div><div>Reading package lists... Done</div><div>Building dependency tree</div><div>Reading state information... Done</div><div>Some packages could not be installed. This may mean that you have</div>
<div>requested an impossible situation or if you are using the unstable</div><div>distribution that some required packages have not yet been created</div><div>or been moved out of Incoming.</div><div>The following information may help to resolve the situation:</div>
<div><br></div><div>The following packages have unmet dependencies:</div><div> yt : Depends: libhdf5-serial-1.8.4 but it is not installable</div><div> Recommends: python-matplotlib (>= 1.1.0) but it is not going to be installed</div>
<div> Recommends: python-pyx (>= 0.11.1) but it is not going to be installed</div><div> Recommends: ipython (>= 0.12.1) but it is not going to be installed</div><div> Recommends: ipython-notebook (>= 0.12.1) but it is not going to be installed</div>
<div> Recommends: forthon (>= 0.8.11) but it is not going to be installed</div><div>E: Unable to correct problems, you have held broken packages.</div><div><br></div><div>$ apt-cache search libhdf5</div><div>libhdf5-7 - Hierarchical Data Format 5 (HDF5) - runtime files - serial version</div>
<div>libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package</div><div>libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial version</div><div>libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation</div>
<div>libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 version</div><div>libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 version</div><div>libhdf5-mpich2-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich2 Debug package</div>
<div>libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 version</div><div>libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI version</div><div>libhdf5-openmpi-7-dbg - Hierarchical Data Format 5 (HDF5) - OpenMPI Debug package</div>
<div>libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - OpenMPI version</div><div>libhdf5-serial-dev - Hierarchical Data Format 5 (HDF5) - development files - transitionnal package</div><div><br>
</div><div><br></div><div><br></div></div></div><div><br><br><div><div><div>On Mon, Jun 3, 2013 at 9:54 PM, Michael Kuhlen <span dir="ltr"><<a>mqk@astro.berkeley.edu</a>></span> wrote:<br>
</div></div><blockquote style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div><div dir="ltr">Great! I've repackaged this release in my Ubuntu PPA (<a href="http://ppa.launchpad.net/kuhlen/ppa/ubuntu" target="_blank">http://ppa.launchpad.net/kuhlen/ppa/ubuntu</a>).<div>
<br></div><div>Btw, I've now also copied the packages over to Quantal Quetzal (12.10) and Raring Ringtail (13.04), so they should work there too. However, since I'm still on 12.04 I haven't been able to try them out myself. Please report back if you encounter problems.</div>
<div><br></div><div>Mike</div><div><br></div><div><br><br><div><div><div>On Mon, Jun 3, 2013 at 1:42 PM, Matthew Turk <span dir="ltr"><<a>matthewturk@gmail.com</a>></span> wrote:<br>
</div></div><blockquote style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div>Hi all,<br>
<br>
We're proud to release yt version 2.5.3. This is a scheduled point<br>
release that includes all bug fixes identified and fixed since the<br>
release of 2.5.2 on May 1.<br>
<br>
Additions, changes and bug fixes include:<br>
<br>
* yt can now export to RADMC3D<br>
* Athena frontend now supports Static Mesh Refinement and units (<br>
<a href="http://hub.yt-project.org/nb/7l1zua" target="_blank">http://hub.yt-project.org/nb/7l1zua</a> )<br>
* PlotWindows now have a set_font function and a new default font setting<br>
* Colorbars less likely to extend off the edge of a PlotWindow<br>
* Clumps overplotted on PlotWindows are now correctly cont</div></div></blockquote></div></div></div></div></div></blockquote></div></div></blockquote></div></div></div>
</blockquote></div></div></div>
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<br></blockquote></div><br><br clear="all"><div><br></div>-- <br><div dir="ltr"><hr style="margin:1.6em 0px 0px;padding:0px;color:rgb(0,0,0);font-family:'Helvetica Neue',Helvetica,Verdana,sans-serif;font-size:12px">
<p style="margin:0px 0px 10px;padding:0px;font-size:12px;line-height:15px;text-align:justify;color:rgb(0,0,0);font-family:'Helvetica Neue',Helvetica,Verdana,sans-serif">Dr. Michael Kuhlen <br style="margin:0px;padding:0px">
Theoretical Astrophysics Center <br style="margin:0px;padding:0px">UC Berkeley</p></div>
</div>