<div dir="ltr">Hey Mike,<div><br></div><div>Looks like it fails on 13.04. FWIW, the serial hdf5 package appears to be called libhdf5-7. If anyone else has success, let me know, it's possible I'm doing something silly.</div>
<div><br></div><div style>-Nathan</div><div><br></div><div>$ sudo apt-get install yt</div><div><div>Reading package lists... Done</div><div>Building dependency tree</div><div>Reading state information... Done</div><div>Some packages could not be installed. This may mean that you have</div>
<div>requested an impossible situation or if you are using the unstable</div><div>distribution that some required packages have not yet been created</div><div>or been moved out of Incoming.</div><div>The following information may help to resolve the situation:</div>
<div><br></div><div>The following packages have unmet dependencies:</div><div> yt : Depends: libhdf5-serial-1.8.4 but it is not installable</div><div> Recommends: python-matplotlib (>= 1.1.0) but it is not going to be installed</div>
<div> Recommends: python-pyx (>= 0.11.1) but it is not going to be installed</div><div> Recommends: ipython (>= 0.12.1) but it is not going to be installed</div><div> Recommends: ipython-notebook (>= 0.12.1) but it is not going to be installed</div>
<div> Recommends: forthon (>= 0.8.11) but it is not going to be installed</div><div>E: Unable to correct problems, you have held broken packages.</div><div><br></div><div>$ apt-cache search libhdf5</div><div>libhdf5-7 - Hierarchical Data Format 5 (HDF5) - runtime files - serial version</div>
<div>libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package</div><div>libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files - serial version</div><div>libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation</div>
<div>libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 version</div><div>libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files - MPICH2 version</div><div>libhdf5-mpich2-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich2 Debug package</div>
<div>libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files - MPICH2 version</div><div>libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files - OpenMPI version</div><div>libhdf5-openmpi-7-dbg - Hierarchical Data Format 5 (HDF5) - OpenMPI Debug package</div>
<div>libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development files - OpenMPI version</div><div>libhdf5-serial-dev - Hierarchical Data Format 5 (HDF5) - development files - transitionnal package</div><div><br>
</div><div><br></div><div><br></div></div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Mon, Jun 3, 2013 at 9:54 PM, Michael Kuhlen <span dir="ltr"><<a href="mailto:mqk@astro.berkeley.edu" target="_blank">mqk@astro.berkeley.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Great! I've repackaged this release in my Ubuntu PPA (<a href="http://ppa.launchpad.net/kuhlen/ppa/ubuntu" target="_blank">http://ppa.launchpad.net/kuhlen/ppa/ubuntu</a>).<div>
<br></div><div>Btw, I've now also copied the packages over to Quantal Quetzal (12.10) and Raring Ringtail (13.04), so they should work there too. However, since I'm still on 12.04 I haven't been able to try them out myself. Please report back if you encounter problems.</div>
<div><br></div><div>Mike</div><div><br></div><div class="gmail_extra"><br><br><div class="gmail_quote"><div><div class="h5">On Mon, Jun 3, 2013 at 1:42 PM, Matthew Turk <span dir="ltr"><<a href="mailto:matthewturk@gmail.com" target="_blank">matthewturk@gmail.com</a>></span> wrote:<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5">Hi all,<br>
<br>
We're proud to release yt version 2.5.3. This is a scheduled point<br>
release that includes all bug fixes identified and fixed since the<br>
release of 2.5.2 on May 1.<br>
<br>
Additions, changes and bug fixes include:<br>
<br>
* yt can now export to RADMC3D<br>
* Athena frontend now supports Static Mesh Refinement and units (<br>
<a href="http://hub.yt-project.org/nb/7l1zua" target="_blank">http://hub.yt-project.org/nb/7l1zua</a> )<br>
* PlotWindows now have a set_font function and a new default font setting<br>
* Colorbars less likely to extend off the edge of a PlotWindow<br>
* Clumps overplotted on PlotWindows are now correctly contoured<br>
* Allsky projections and HEALpix camera now correctly use four channels (RGBA)<br>
* Many fixes to light ray and profiles for integrated cosmological analysis<br>
* Improvements to OpenMP compilation<br>
* Typo in value for km_per_pc (not used elsewhere in the code base)<br>
has been fixed<br>
* Enable parallel IPython notebook sessions (<br>
<a href="http://hub.yt-project.org/nb/qgn19h" target="_blank">http://hub.yt-project.org/nb/qgn19h</a> )<br>
* Change (~1e-6) to particle_density deposition, enabling it to be<br>
used by FLASH and other frontends<br>
* Addition of is_root function for convenience in parallel analysis sessions<br>
* Additions to Orion particle reader<br>
* Fix long-standing bug for plotting arrays with range of zero<br>
* Fixing TotalMass for case when particles not present<br>
* Fixing the density threshold or HOP and pHOP to match the merger tree<br>
* Reason can now plot with latest plot window<br>
* Adding option to have interpolation based on non-uniform bins in<br>
interpolator code<br>
* Issues with VelocityMagnitude and aliases with velo have been<br>
corrected in the FLASH frontend<br>
* Halo radii are calculated correctly for domains that do not start at 0,0,0.<br>
* Halo mass function now works for non-Enzo frontends.<br>
* Bug fixes for directory creation, typos in docstrings<br>
<br>
If you are using the stable branch of yt from an installation script,<br>
you can upgrade using "yt update" or "yt update --all" to upgrade your<br>
full dependency stack. If you are using the development branch, you<br>
may already have these fixes. A tarball of this release has been<br>
uploaded to the Python Package Index (PyPI).<br>
<br>
This release includes a total of over 150 changesets, contributed over<br>
the course of nearly 40 pull requests by over a dozen individuals.<br>
The next scheduled release will be on July 1, and will be version 2.6.<br>
We are hoping to include a unification of the Boxlib frontends,<br>
compatibility with Python 3 (and embedding inside Blender) and other<br>
usual improvements to the yt codebase.<br>
<br>
Documentation for this release can be found at:<br>
<br>
<a href="http://yt-project.org/docs/dev/" target="_blank">http://yt-project.org/docs/dev/</a><br>
<br>
Thanks very much,<br>
<br>
Matt, on behalf of the yt development team<br>
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</font></span></blockquote></div><span class="HOEnZb"><font color="#888888"><br><br clear="all"><div><br></div>-- <br><div dir="ltr"><hr style="font-size:12px;font-family:'Helvetica Neue',Helvetica,Verdana,sans-serif;margin:1.6em 0px 0px;padding:0px">
<p style="line-height:15px;text-align:justify;font-size:12px;font-family:'Helvetica Neue',Helvetica,Verdana,sans-serif;margin:0px 0px 10px;padding:0px">
Dr. Michael Kuhlen <br style="margin:0px;padding:0px">Theoretical Astrophysics Center <br style="margin:0px;padding:0px">UC Berkeley</p></div>
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