Hi Alice.<div><br></div><div>I think I fixed the csh issue. I made sure that none of the environment variables that the activate.csh script touches will end with a colon. PATH and LD_LIBRARY_PATH are the only ones that need the old value appended, and I removed the others. That is, YT_DEST will always be the current yt path, with nothing else at the end.</div>
<div><br></div><div>I attached the new activate.csh script, with an empty VIRTUAL_ENV value on line 10. Please set this value to your yt install directory, which looks like "<span style>/Users/acoucke/yt-i386" and try it again with a fresh terminal. If this works for you, please report back and</span><span style> I can commit it.</span></div>
<div><span style><br></span></div><div><span style>Best,</span></div><div><span style>Casey</span></div><div><br></div><div><br><div class="gmail_quote">On Sun, Mar 25, 2012 at 10:00 AM, Britton Smith <span dir="ltr"><<a href="mailto:brittonsmith@gmail.com">brittonsmith@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Alice,<div><br></div><div>First of all, welcome to yt!</div><div><br></div><div>Someone is looking into your csh issues and will reply to the list with an update soon.</div>
<div><br></div><div>I recently installed yt on a machine running OSX Lion and did not have the issues you reported with zlib and compilers. My experience was with a brand new machine that did not have previously installed compilers or libraries. In your case, was this a clean install like mine, or did you upgrade to Lion from an older OS? If it is the latter, my suspicion is that your issues were related to having some outdated libraries in your path. I think, in general, setting the environment variable "<span style="font-family:Tahoma;font-size:13px">export CC=gcc" on Lion will minimally do no harm, so we will add a note on that to the install script.</span></div>
<span class="HOEnZb"><font color="#888888">
<div><span style="font-family:Tahoma;font-size:13px"><br></span></div><div><span style="font-family:Tahoma;font-size:13px">Britton</span></div></font></span><div><br><div class="gmail_quote"><div class="im">On Fri, Mar 23, 2012 at 5:41 PM, Alice Coucke <span dir="ltr"><<a href="mailto:acoucke@amnh.org" target="_blank">acoucke@amnh.org</a>></span> wrote:<br>
</div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5">
<div>
<div style="direction:ltr;font-size:10pt;font-family:Tahoma">Hello everyone,
<div><br>
</div>
<div>It looks like there is a bug with the csh environment setting. I am a Unix beginner so I might have done an error. </div>
<div>I had to make these modifications to the install script to set up yt in a csh shell OSX Lion machine :</div>
<div><br>
</div>
<div>* Disable the install of zlib. The HDF5 build failed because of some sort of version confusion.</div>
<div><br>
</div>
<div>* Force the use of gcc over the newer clang compiler by setting : </div>
<div>export CC=gcc</div>
<div>at the top of the install script. Matplotlib-1.1.0 fails to compile with the default Lion cc which is clang based.</div>
<div><br>
</div>
<div>Once installed, I had difficulties to run it. I tried to follow the Extremely Simple Data Inspection.</div>
<div>
<pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><font color="#BB60D5"><br></font></pre>
<pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><font color="#BB60D5">$ </font>yt stats <font color="#BB60D5">$YT_DEST</font>/src/yt-hg/tests/DD0010/moving7_0010</pre>
<pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"></pre>
<pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><br></pre>
<pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px">BUT that is what happens :</pre>
<pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><br></pre>
<pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"></pre>
<pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px">yt : [ERROR ] 2012-03-23 11:17:08,651 Couldn't figure out output type for /Users/acoucke/yt-i386:/src/yt-hg/tests/DD0010/moving7_0010
Traceback (most recent call last):
File "/Users/acoucke/yt-i386/bin/yt", line 9, in <module>
load_entry_point('yt==2.3', 'console_scripts', 'yt')()
File "/Users/acoucke/yt-i386/src/yt-hg/yt/utilities/command_line.py", line 1610, in run_main
sys.exit(YT.main())
File "/Users/acoucke/yt-i386/src/yt-hg/yt/utilities/cmdln.py", line 257, in main
return self.cmd(args)
File "/Users/acoucke/yt-i386/src/yt-hg/yt/utilities/cmdln.py", line 280, in cmd
retval = self.onecmd(argv)
File "/Users/acoucke/yt-i386/src/yt-hg/yt/utilities/cmdln.py", line 412, in onecmd
return self._dispatch_cmd(handler, argv)
File "/Users/acoucke/yt-i386/src/yt-hg/yt/utilities/cmdln.py", line 1100, in _dispatch_cmd
return handler(argv[0], opts, *args)
File "/Users/acoucke/yt-i386/src/yt-hg/yt/utilities/command_line.py", line 256, in arg_iterate
func(self, subcmd, opts, arg)
File "/Users/acoucke/yt-i386/src/yt-hg/yt/utilities/command_line.py", line 627, in do_stats
pf = _fix_pf(arg)
File "/Users/acoucke/yt-i386/src/yt-hg/yt/utilities/command_line.py", line 44, in _fix_pf
raise IOError
IOError</pre>
<pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><br></pre>
<pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px">Then if I type : </pre>
<pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><br></pre>
<pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><span style="font-family:Tahoma;white-space:normal"><pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px">
$ echo $YT_DEST </pre></span></pre>
<pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px">/Users/acoucke/yt-i386:<span style="font-family:Tahoma;white-space:normal"><pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px">
<br></pre></span><span style="font-family:Tahoma;white-space:normal"><pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px">
It seems that there is an unexpected colon here because :</pre><pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px">
</pre><pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><br></pre><pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px">
$ ls /Users/acoucke/yt-i386:
ls: /Users/acoucke/yt-i386:: No such file or directory</pre><pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px">
<br></pre><pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px">I have to use : </pre><pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px">
<br></pre></span><span style="font-family:'Lucida Grande';font-size:12px;white-space:normal">setenv YT_DEST /Users/acoucke/yt-i386</span></pre>
<pre style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><font face="'Lucida Grande'"><span style="font-size:12px;white-space:normal"><br>
</span></font></pre>
<pre style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><font face="'Lucida Grande'"><span style="font-size:12px;white-space:normal">to make that works.</span></font></pre>
<pre style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><font face="'Lucida Grande'"><span style="font-size:12px;white-space:normal"><br>
</span></font></pre>
<pre style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><font face="'Lucida Grande'"><span style="font-size:12px;white-space:normal"><br>
</span></font></pre>
<pre style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><font face="'Lucida Grande'"><span style="font-size:12px;white-space:normal">Best,</span></font></pre>
<pre style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><font face="'Lucida Grande'"><span style="font-size:12px;white-space:normal"><br>
</span></font></pre>
<pre style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><font face="'Lucida Grande'"><span style="font-size:12px;white-space:normal"><br>
</span></font></pre>
<pre style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><font face="'Lucida Grande'"><span style="font-size:12px;white-space:normal">Alice Coucke</span></font></pre>
<pre style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><font face="'Lucida Grande'"><span style="font-size:12px;white-space:normal"><br>
</span></font></pre>
<pre style="margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px"><span style="font-size:13px;font-family:Tahoma;white-space:normal"><pre style="font-size:13px;margin-top:0px;margin-right:0px;margin-bottom:0px;margin-left:0px;padding-top:0px;padding-right:0px;padding-bottom:0px;padding-left:0px">
<br></pre></span></pre>
</div>
</div>
</div>
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