<html><head><style type="text/css"><!-- DIV {margin:0px;} --></style></head><body><div style="font-family:arial,helvetica,sans-serif;font-size:10pt">Hi<br>I did, but result is -ve. I feel that may be, matplotlib or other python related routine has error. I am using Python 2.6.5 (r265:79063, Jul 5 2010, 11:46:13) and IPython 0.10. After unsuccessful attempt I tried to re-install yt manually using svn which did not give any error. However, still iyt is not working.<br>regs<br>Abhi<br><br>$> iyt<br>Traceback (most recent call last):<br> File "/usr/local/bin/iyt", line 5, in <module><br> pkg_resources.run_script('yt==1.7', 'iyt')<br> File "/usr/local/lib64/python2.6/site-packages/distribute-0.6.10-py2.6.egg/pkg_resources.py", line 461, in run_script<br> self.require(requires)[0].run_script(script_name, ns)<br> File
"/usr/local/lib64/python2.6/site-packages/distribute-0.6.10-py2.6.egg/pkg_resources.py", line 1194, in run_script<br> execfile(script_filename, namespace, namespace)<br> File "/usr/local/lib64/python2.6/site-packages/yt-1.7-py2.6-linux-x86_64.egg/EGG-INFO/scripts/iyt", line 32, in <module><br> ip_shell = IPython.Shell.IPShellMatplotlib(user_ns=namespace)<br> File "/usr/local/lib/python2.6/site-packages/IPython/Shell.py", line 1106, in __init__<br> shell_class=MatplotlibShell)<br> File "/usr/local/lib/python2.6/site-packages/IPython/Shell.py", line 73, in __init__<br> debug=debug,shell_class=shell_class)<br> File "/usr/local/lib/python2.6/site-packages/IPython/ipmaker.py", line 100, in make_IPython<br> embedded=embedded,**kw)<br> File "/usr/local/lib/python2.6/site-packages/IPython/Shell.py", line 627, in
__init__<br> user_ns,user_global_ns,b2 = self._matplotlib_config(name,user_ns,user_global_ns)<br> File "/usr/local/lib/python2.6/site-packages/IPython/Shell.py", line 556, in _matplotlib_config<br> import matplotlib.pylab as pylab<br> File "/usr/lib64/python2.6/site-packages/matplotlib/pylab.py", line 259, in <module><br> from matplotlib.pyplot import *<br> File "/usr/lib64/python2.6/site-packages/matplotlib/pyplot.py", line 95, in <module><br> new_figure_manager, draw_if_interactive, show = pylab_setup()<br> File "/usr/lib64/python2.6/site-packages/matplotlib/backends/__init__.py", line 25, in pylab_setup<br> globals(),locals(),[backend_name])<br>ImportError: No module named backend_tkagg<br>$> <br>$> setenv HDF5_DISABLE_VERSION_CHECK 2<br>$> iyt<br>Traceback (most recent call last):<br> File "/usr/local/bin/iyt",
line 5, in <module><br> pkg_resources.run_script('yt==1.7', 'iyt')<br> File "/usr/local/lib64/python2.6/site-packages/distribute-0.6.10-py2.6.egg/pkg_resources.py", line 461, in run_script<br> self.require(requires)[0].run_script(script_name, ns)<br> File "/usr/local/lib64/python2.6/site-packages/distribute-0.6.10-py2.6.egg/pkg_resources.py", line 1194, in run_script<br> execfile(script_filename, namespace, namespace)<br> File "/usr/local/lib64/python2.6/site-packages/yt-1.7-py2.6-linux-x86_64.egg/EGG-INFO/scripts/iyt", line 32, in <module><br> ip_shell = IPython.Shell.IPShellMatplotlib(user_ns=namespace)<br> File "/usr/local/lib/python2.6/site-packages/IPython/Shell.py", line 1106, in __init__<br> shell_class=MatplotlibShell)<br> File "/usr/local/lib/python2.6/site-packages/IPython/Shell.py", line 73, in
__init__<br> debug=debug,shell_class=shell_class)<br> File "/usr/local/lib/python2.6/site-packages/IPython/ipmaker.py", line 100, in make_IPython<br> embedded=embedded,**kw)<br> File "/usr/local/lib/python2.6/site-packages/IPython/Shell.py", line 627, in __init__<br> user_ns,user_global_ns,b2 = self._matplotlib_config(name,user_ns,user_global_ns)<br> File "/usr/local/lib/python2.6/site-packages/IPython/Shell.py", line 556, in _matplotlib_config<br> import matplotlib.pylab as pylab<br> File "/usr/lib64/python2.6/site-packages/matplotlib/pylab.py", line 259, in <module><br> from matplotlib.pyplot import *<br> File "/usr/lib64/python2.6/site-packages/matplotlib/pyplot.py", line 95, in <module><br> new_figure_manager, draw_if_interactive, show = pylab_setup()<br> File
"/usr/lib64/python2.6/site-packages/matplotlib/backends/__init__.py", line 25, in pylab_setup<br> globals(),locals(),[backend_name])<br>ImportError: No module named backend_tkagg<br>$> <br><div> </div><strong style="font-family: tahoma,new york,times,serif;"><font color="#c00000" size="2">Dr. Abhijit Bhattacharyya</font></strong><span style="font-family: tahoma,new york,times,serif;"><font size="2"> </font>[</span><font style="color: rgb(0, 96, 191); font-family: tahoma,new york,times,serif;" face="comic sans ms" size="1">Scientific Officer</font><span style="font-family: tahoma,new york,times,serif;">]</span><font size="2"><font class="Apple-style-span" color="#7792ac" face="tahoma, 'new york', times, serif"><b><br></b></font></font><font style="color: rgb(52, 125, 126); font-family: tahoma,new york,times,serif;" size="1"><em>C<span style="color: rgb(64, 127, 0);">ontrol Instrumentation Division (CnID) </span><br style="color:
rgb(64, 127, 0);"><span style="color: rgb(64, 127, 0);">Electronics and Instrumentation Group (E&I Group) </span><br style="color: rgb(64, 127, 0);"><span style="color: rgb(64, 127, 0);">Reactor Control Division Building (RCnD Building) </span><br style="color: rgb(64, 127, 0);"><span style="color: rgb(64, 127, 0);">Bhabha Atomic Research Center (BARC) </span><br style="color: rgb(64, 127, 0);"><span style="color: rgb(64, 127, 0);">Trombay, Mumbai - 400 085</span></em> </font><div><font style="color: rgb(52, 125, 126); font-family: tahoma,new york,times,serif;" size="1"></font><font style="color: rgb(64, 127, 0); font-family: tahoma,new york,times,serif;" color="#007f7f" size="1">Phone: +91.22.2559.5493</font></div><div><font style="color: rgb(64, 127, 0); font-family: tahoma,new york,times,serif;" color="#007f7f" size="1"></font><font style="color: rgb(64, 127, 0); font-family: tahoma,new york,times,serif;" color="#007f7f" size="1">Email:
vega@barc.gov.in</font> </div><div><font style="font-family: tahoma,new york,times,serif;" color="#00407f"><strong><font size="2"><font style="background-color: rgb(255, 255, 191);">Residence:</font> <br></font></strong></font><font><font size="2"><font style="font-weight: bold;"><em><font class="Apple-style-span" face="garamond, 'new york', times, serif"><font class="Apple-style-span" color="#609a9f">811 Akashdeep </font></font></em></font></font></font></div><div><font><font size="2"><font style="font-weight: bold;"><em><font class="Apple-style-span" face="garamond, 'new york', times, serif"><font class="Apple-style-span" color="#609a9f"></font></font></em></font></font></font><span class="Apple-style-span" style="font-weight: bold; font-size: small;"><em><font class="Apple-style-span" face="garamond, 'new york', times, serif"><font class="Apple-style-span" color="#609a9f">Anushakti Nagar </font></font></em></span><p><font
style="font-weight: bold;" size="2"><em><font class="Apple-style-span" face="garamond, 'new york', times, serif"><font class="Apple-style-span" color="#609a9f">Mumbai- 400094 <br>Phone: +91.22.2558.0930 <br>Mobile: +91.98201.49770</font></font></em></font></p><p><strong><em><font color="#0000bf"><font class="Apple-style-span" face="garamond, 'new york', times, serif">GPS: </font><font size="2"><font class="Apple-style-span" face="garamond, 'new york', times, serif">19 deg 01 min 54.52 secs North; </font></font></font></em></strong></p><p><strong><em><font color="#0000bf" size="2"><font class="Apple-style-span" face="garamond, 'new york', times, serif"> 72 deg 55 min 46.30 secs East</font></font></em></strong></p></div><div><br></div><div style="font-family: arial,helvetica,sans-serif; font-size: 10pt;"><br><div style="font-family: times new roman,new york,times,serif; font-size: 12pt;"><font
face="Tahoma" size="2"><hr size="1"><b><span style="font-weight: bold;">From:</span></b> Matthew Turk <matthewturk@gmail.com><br><b><span style="font-weight: bold;">To:</span></b> Discussion of the yt analysis package <yt-users@lists.spacepope.org><br><b><span style="font-weight: bold;">Sent:</span></b> Sun, 8 August, 2010 3:13:14 AM<br><b><span style="font-weight: bold;">Subject:</span></b> Re: [yt-users] IYT gives problem after updation of system<br></font><br><p>Hi Abhijit,</p>
<p>Setting HDF5_DISABLE_VERSION_CHECK to 2 should be okay in this case. Let us know if it acts up, though!</p>
<p>-Matt</p>
<p></p><blockquote type="cite">On Aug 7, 2010 2:22 PM, "Dr. ABHIJIT BHATTACHARYYA" <<a rel="nofollow" ymailto="mailto:b_abhijit2k@yahoo.co.in" target="_blank" href="mailto:b_abhijit2k@yahoo.co.in">b_abhijit2k@yahoo.co.in</a>> wrote:<br><br><div><div style="font-family: arial,helvetica,sans-serif; font-size: 10pt; color: rgb(0, 0, 0);">
Hi<br><br>I upgraded my system to OpenSUSE 11.3. I kept 'iyt' and 'enzo' in '/usr/local' while I only upgraded '/' while '/' and '/usr/local' are two different partitions. Now Enzo is working while iyt gives following error.<br>
<br>$> iyt<br>Warning! ***HDF5 library version mismatched error***<br>The HDF5 header files used to compile this application do not match<br>the version used by the HDF5 library to which this application is linked.<br>
Data corruption or segmentation faults may occur if the application continues.<br>This can happen when an application was compiled by one version of HDF5 but<br>linked with a different version of static or shared HDF5 library.<br>
You should recompile the application or check your shared library related<br>settings such as 'LD_LIBRARY_PATH'.<br>You can,
at your own risk, disable this warning by setting the environment<br>variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.<br>Setting it to 2 or higher will suppress the warning messages totally.<br>Headers are 1.8.5, library is 1.8.4<br>
SUMMARY OF THE HDF5 CONFIGURATION<br> =================================<br><br>General Information:<br>-------------------<br> HDF5 Version: 1.8.4-patch1<br> Configured on: Sat May 29 02:41:00 IST 2010<br>
Configured by:
root@Pakudidi<br> Configure mode: production<br> Host system: x86_64-unknown-linux-gnu<br> Uname information: Linux Pakudidi 2.6.31-rc9-7-default #1 SMP 2009-09-08 18:49:15 +0200 x86_64 x86_64 x86_64 GNU/Linux<br>
Byte sex: little-endian<br> Libraries: <br> Installation point: /usr/local<br><br>Compiling
Options:<br>------------------<br> Compilation Mode: production<br> C Compiler: /usr/bin/gcc (gcc-4.4.1)<br> CFLAGS: <br> H5_CFLAGS: -std=c99 -pedantic -Wall -Wextra -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -Wno-long-long -Wfloat-equal -Wmissing-format-attribute -Wmissing-noreturn -Wpacked
-Wdisabled-optimization -Wformat=2 -Wunreachable-code -Wendif-labels -Wdeclaration-after-statement -Wold-style-definition -Winvalid-pch -Wvariadic-macros -Wnonnull -Winit-self -Wmissing-include-dirs -Wswitch-default -Wswitch-enum -Wunused-macros -Wunsafe-loop-optimizations -Wc++-compat -Wstrict-overflow -Wlogical-op -Wlarger-than=2048 -Wvla -Wsync-nand -Wframe-larger-than=16384 -Wpacked-bitfield-compat -O0 -fomit-frame-pointer -finline-functions<br>
AM_CFLAGS: <br> CPPFLAGS: <br> H5_CPPFLAGS: -D_POSIX_SOURCE -DNDEBUG
-UH5_DEBUG_API<br> AM_CPPFLAGS: -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_BSD_SOURCE <br> Shared Libraries: yes<br> Static Libraries: yes<br> Statically Linked Executables: no<br>
LDFLAGS: <br> AM_LDFLAGS: <br> Extra libraries: -lz -lm
<br> Archiver: ar<br> Ranlib: ranlib<br> Debugged Packages: <br> API Tracing: no<br><br>Languages:<br>----------<br> Fortran: yes<br>
Fortran Compiler: ifort<br> Fortran
Flags: <br> H5 Fortran Flags: -O3<br> AM Fortran Flags: -fPIC<br> C++: yes<br> C++ Compiler: g++<br> C++ Flags: <br> H5 C++ Flags: <br>
AM C++ Flags:
<br><br>Features:<br>---------<br> Parallel HDF5: no<br> High Level library: yes<br> Threadsafety: no<br> Default API Mapping: v18<br> With Deprecated Public Symbols: yes<br>
I/O filters (external): deflate(zlib)<br> I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset<br> MPE:
no<br> Direct VFD: no<br> dmalloc: no<br>Clear file buffers before write: yes<br> Using memory checker: no<br> Function Stack Tracing: no<br> GPFS: no<br>
Strict File Format Checks: no<br> Optimization Instrumentation: no<br> Linux Large File Support (LFS): yes<br>Bye...<br>Abort<br>$><br><br>Can you help me how to proceed?<br>Thanks and Regs<br>Abhijit<br></div>
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