<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Stephen,<div><br></div><div>This was being run as a batch job, 2 cores/node on 256 cores total.</div><div><br></div><div>I just tried loading up yt on the login node of Kraken, and hit some problems. Does any of this illuminate things?</div><div><br></div><div><div><font class="Apple-style-span" face="Courier">Python 2.4.2 (#1, Dec 2 2008, 00:09:07) </font></div><div><font class="Apple-style-span" face="Courier">[GCC 4.1.2 20070115 (SUSE Linux)] on linux2</font></div><div><font class="Apple-style-span" face="Courier">Type "help", "copyright", "credits" or "license" for more information.</font></div><div><font class="Apple-style-span" face="Courier">>>> from yt.mods import *</font></div><div><font class="Apple-style-span" face="Courier">yt.lagos WARNING 2010-07-23 16:32:56,037 No h5py. Data serialization disabled.</font></div><div><font class="Apple-style-span" face="Courier">Traceback (most recent call last):</font></div><div><font class="Apple-style-span" face="Courier"> File "<stdin>", line 1, in ?</font></div><div><font class="Apple-style-span" face="Courier"> File "/lustre/scratch/proj/yt_common/trunk/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/mods.py", line 32, in ?</font></div><div><font class="Apple-style-span" face="Courier"> import yt.lagos as lagos</font></div><div><font class="Apple-style-span" face="Courier"> File "/lustre/scratch/proj/yt_common/trunk/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/lagos/__init__.py", line 47, in ?</font></div><div><font class="Apple-style-span" face="Courier"> from yt.arraytypes import *</font></div><div><font class="Apple-style-span" face="Courier"> File "/lustre/scratch/proj/yt_common/trunk/lib/python2.6/site-packages/yt-2.0dev-py2.6-linux-x86_64.egg/yt/arraytypes.py", line 30, in ?</font></div><div><font class="Apple-style-span" face="Courier"> import numpy as na</font></div><div><font class="Apple-style-span" face="Courier"> File "/lustre/scratch/proj/yt_common/trunk/lib/python2.6/site-packages/numpy/__init__.py", line 132, in ?</font></div><div><font class="Apple-style-span" face="Courier"> import add_newdocs</font></div><div><font class="Apple-style-span" face="Courier"> File "/lustre/scratch/proj/yt_common/trunk/lib/python2.6/site-packages/numpy/add_newdocs.py", line 9, in ?</font></div><div><font class="Apple-style-span" face="Courier"> from lib import add_newdoc</font></div><div><font class="Apple-style-span" face="Courier"> File "/lustre/scratch/proj/yt_common/trunk/lib/python2.6/site-packages/numpy/lib/__init__.py", line 4, in ?</font></div><div><font class="Apple-style-span" face="Courier"> from type_check import *</font></div><div><font class="Apple-style-span" face="Courier"> File "/lustre/scratch/proj/yt_common/trunk/lib/python2.6/site-packages/numpy/lib/type_check.py", line 8, in ?</font></div><div><font class="Apple-style-span" face="Courier"> import numpy.core.numeric as _nx</font></div><div><font class="Apple-style-span" face="Courier"> File "/lustre/scratch/proj/yt_common/trunk/lib/python2.6/site-packages/numpy/core/__init__.py", line 8, in ?</font></div><div><font class="Apple-style-span" face="Courier"> import numerictypes as nt</font></div><div><font class="Apple-style-span" face="Courier"> File "/lustre/scratch/proj/yt_common/trunk/lib/python2.6/site-packages/numpy/core/numerictypes.py", line 87, in ?</font></div><div><font class="Apple-style-span" face="Courier"> from numpy.core.multiarray import typeinfo, ndarray, array, empty, dtype</font></div><div><font class="Apple-style-span" face="Courier">ImportError: No module named multiarray</font></div></div><div><br></div><div><br></div><div>-Brian</div><div><br></div><div><div><div>On Jul 23, 2010, at 4:23 PM, Stephen Skory wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div>Brian & Matt,<br><br>Hello from Boulder! I'm probably not going to be able to follow this up very <br>quickly. Until tomorrow my internet access is limited to cafés and we have lots <br>of other things to get done!<br><br><blockquote type="cite">I'd suggest moving it out of the way for now and continuing on.<br></blockquote><blockquote type="cite">Stephen, if you're listening, is it possible that the .yt file has had<br></blockquote><blockquote type="cite">a ridiculous number of HDF5 groups made, which is confusing and<br></blockquote><blockquote type="cite">overflowing h5py?<br></blockquote><br><br>Nothing that I've added to yt makes use of the .yt file, so the various tools I <br>wrote Brian mentioned shouldn't affect it. One thought is I wonder if there are <br>memory limits on the login nodes on Kraken, and if this is being hit? Brian, <br>where you trying this on the login node, and if so, can you try it in an <br>interactive session (one node will suffice).<br><br> _______________________________________________________<br><a href="mailto:sskory@physics.ucsd.edu">sskory@physics.ucsd.edu</a> o__ Stephen Skory<br><a href="http://physics.ucsd.edu/~sskory/">http://physics.ucsd.edu/~sskory/</a> _.>/ _Graduate Student<br>________________________________(_)_\(_)_______________<br><br>_______________________________________________<br>yt-users mailing list<br><a href="mailto:yt-users@lists.spacepope.org">yt-users@lists.spacepope.org</a><br>http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org<br></div></blockquote></div><br></div></body></html>