[yt-users] How to generate ghost zones?

Kalina Borkiewicz kalina at illinois.edu
Thu May 11 09:14:23 PDT 2017


Hi Nathan,

Thanks for getting back to me. Yes, I am looking to compute a field in 
the grid, and a ghost zone of size 1 surrounding the grid, for FLASH 
data, specifically. Your code snippet works for the IsolatedGalaxy Enzo 
dataset, but doesn't work on the GasSloshing FLASH dataset from 
http://yt-project.org/data/ . I get this error on retrieve_ghost_zones:

"
Traceback (most recent call last):
   File "writeAMRVDB_FLASH.py", line 28, in <module>
     gz_grid = grid.retrieve_ghost_zones(1, variable)
   File 
"/i0/src/sci/yt33ana/yt-conda/src/yt-hg/yt/data_objects/grid_patch.py", 
line 250, in retrieve_ghost_zones
     **kwargs)
   File 
"/i0/src/sci/yt33ana/yt-conda/src/yt-hg/yt/data_objects/construction_data_containers.py", 
line 543, in __init__
     self.get_data(fields)
   File 
"/i0/src/sci/yt33ana/yt-conda/src/yt-hg/yt/data_objects/construction_data_containers.py", 
line 629, in get_data
     if len(fill) > 0: self._fill_fields(fill)
   File 
"/i0/src/sci/yt33ana/yt-conda/src/yt-hg/yt/data_objects/construction_data_containers.py", 
line 667, in _fill_fields
     for chunk in self._data_source.chunks(fields, "io"):
   File 
"/i0/src/sci/yt33ana/yt-conda/src/yt-hg/yt/data_objects/data_containers.py", 
line 1079, in chunks
     self.get_data() # Ensure we have built ourselves
   File 
"/i0/src/sci/yt33ana/yt-conda/src/yt-hg/yt/data_objects/data_containers.py", 
line 1113, in get_data
     self.index._identify_base_chunk(self)
   File 
"/i0/src/sci/yt33ana/yt-conda/src/yt-hg/yt/geometry/grid_geometry_handler.py", 
line 290, in _identify_base_chunk
     gi = dobj.selector.select_grids(self.grid_left_edge,
   File 
"/i0/src/sci/yt33ana/yt-conda/src/yt-hg/yt/data_objects/data_containers.py", 
line 1074, in selector
     self._selector = sclass(self)
   File "yt/geometry/selection_routines.pyx", line 855, in 
yt.geometry.selection_routines.RegionSelector.__init__ 
(yt/geometry/selection_routines.c:16696)
RuntimeError: Error: yt attempted to read outside the boundaries of a 
non-periodic domain along dimension 0.
Region left edge = -4.16556e+24 code_length, Region right edge = 
4.16556e+24 code_length
Dataset left edge = -3.70272e+24 code_length, Dataset right edge = 
3.70272e+24 code_length

This commonly happens when trying to compute ghost cells up to the 
domain boundary. Two possible solutions are to load a smaller region 
that does not border the edge or override the periodicity for this dataset.
"


-Kalina


------------------------------------------------------------------------

Hi Kalina,

We have a way of generating ghost zones using internal APIs that you may be
able to use.

What sort of ghost zone information do you need? Something like for a given
grid patch, you want to be able to compute a field in the grid and some
ghost zones surrounding the grid?

If so, something like this should work:

     import yt

     # available for download at yt-project.org/data
     ds = yt.load('IsolatedGalaxy/galaxy0030/galaxy0030')

     # grab a grid object, ds.index.grids is a python list containing
     # references to all of the grids in the simulation
     grid = ds.index.grids[0]

     gz_grid = grid.retrieve_ghost_zones(3, 'density')

     print(gz_grid['density'].shape)

     print(grid['density'].shape)

This should print "(38, 38, 38)" and "(32, 32, 32)".

Note that this will only work for patch AMR data (e.g. FLASH, Enzo, Boxlib,
etc). Also note that the retrieve_ghost_zones function takes a "smoothed"
keyword argument, which if set to True will use interpolation to estimate
field values and if set to False (the default) will use nearest neighbor
sampling.

-Nathan

On Wed, May 3, 2017 at 11:50 AM, Kalina Borkiewicz <kalina at illinois.edu 
<http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>
wrote:

>/I see in the yt 3.3 change log that "ghost zone generation" is a thing, />/but I can't seem to find anything else about this. />//>/I would like to generate ghost zones for FLASH data. I tried />/retrieve_ghost_zones() but that gives an error, and I can't find any other />/ghost zone-related functions. Could I get some advice? />//>/Thanks, />/Kalina/


On 05/11/2017 10:55 AM, yt-users-request at lists.spacepope.org wrote:
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> Today's Topics:
>
>     1. Re: ENZO build error (Alankar Dutta)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Thu, 11 May 2017 21:24:55 +0530
> From: Alankar Dutta <dutta.alankar at gmail.com>
> To: Discussion of the yt analysis package
> 	<yt-users at lists.spacepope.org>
> Subject: Re: [yt-users] ENZO build error
> Message-ID:
> 	<CA+6Z7qpeKA+zXdtWHjNe4wsf5S0aYexW8F9dGKXJsJY_C5AXVw at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hi David,
>
> I saw that file. Couldn't figure out what's wrong.
> I am attaching it.
>
> Alankar
>
> On Thu, May 11, 2017 at 6:28 PM, David Collins <dcollins4096 at gmail.com>
> wrote:
>
>> Hi, Alankar--
>>
>> In src/enzo there's a file, out.compile.  That will have your linking
>> errors, look in that.  Let me know if it's not obvious what to do after you
>> look there.
>>
>> d.
>>
>> On Wed, May 10, 2017 at 11:50 PM, Alankar Dutta <dutta.alankar at gmail.com>
>> wrote:
>>
>>> Hello yt-community,
>>>
>>> I was trying to build ENZO. I downloaded yt for Python 2 compiled all
>>> dependent libraries and activated yt with mercurial installed. when I issue
>>> make, I get the following error. I am also attaching my make.mach file I
>>> used.
>>>
>>> Alankar
>>>
>>> Updating DEPEND
>>> make: [Makefile:361: dep] Error 127 (ignored)
>>> make: [Makefile:362: dep] Error 127 (ignored)
>>> make: [Makefile:363: dep] Error 127 (ignored)
>>> make: [Makefile:364: dep] Error 127 (ignored)
>>> make: [Makefile:365: dep] Error 127 (ignored)
>>> make: [Makefile:366: dep] Error 127 (ignored)
>>> make: [Makefile:367: dep] Error 127 (ignored)
>>> Compiling enzo.C
>>> Compiling MHDLoopInit.C
>>> Compiling Grid_MHDLoopInitGrid.C
>>> Compiling acml_st1.F
>>> Compiling AdiabaticExpansionInitialize.C
>>> Compiling AdjustRefineRegion.C
>>> Compiling AdjustMustRefineParticlesRefineToLevel.C
>>> Compiling AMRH5writer.C
>>> Compiling AnalysisBaseClass.C
>>> Compiling AnalysisBaseClass_HDF5Utils.C
>>> Compiling arccosh.C
>>> Compiling arcsinh.C
>>> Compiling AssignGridToTaskMap.C
>>> Compiling auto_show_compile_options.C
>>> Compiling auto_show_config.C
>>> Compiling auto_show_flags.C
>>> Compiling auto_show_version.C
>>> Compiling BlockSolve.F
>>> Compiling calcdiss.F
>>> Compiling calc_dt.F
>>> Compiling calc_dt_c.c
>>> Compiling calc_eigen.F
>>> Compiling calc_photo_rates.F
>>> Compiling calc_rad.F
>>> Compiling calc_rates.F
>>> Compiling calc_tdust_1d.F
>>> Compiling calc_tdust_3d.F
>>> Compiling CalcEmiss.C
>>> Compiling CheckEmissivity.C
>>> Compiling ClearEmissivity.C
>>> Compiling CalculateSubtractionParameters.C
>>> Compiling CallProblemSpecificRoutines.C
>>> Compiling CallPython.C
>>> Compiling CheckEnergyConservation.C
>>> Compiling CheckForOutput.C
>>> Compiling CheckForResubmit.C
>>> Compiling CheckForTimeAction.C
>>> Compiling CheckShearingBoundaryConsistency.C
>>> Compiling chtable.F
>>> Compiling cic_deposit.F
>>> Compiling cic_deposit_c.c
>>> Compiling cic_flag.F
>>> Compiling cic_flag_c.c
>>> Compiling cic_interp.F
>>> Compiling cic_interp_c.c
>>> Compiling cicinterp.F
>>> Compiling cie_thin_cooling_rate.F
>>> Compiling cluster_maker.F
>>> Compiling ClusterInitialize.C
>>> Compiling ClusterSMBHSumGasMass.C
>>> Compiling c_message.C
>>> Compiling colh2diss.F
>>> Compiling CollapseTestInitialize.C
>>> Compiling coll_rates.F
>>> Compiling CommunicationBroadcastValue.C
>>> Compiling CommunicationBufferedSend.C
>>> Compiling CommunicationCombineGrids.C
>>> Compiling CommunicationCollectParticles.C
>>> Compiling CommunicationInitialize.C
>>> Compiling CommunicationLoadBalanceRootGrids.C
>>> Compiling CommunicationLoadBalanceGrids.C
>>> Compiling CommunicationMergeStarParticle.C
>>> Compiling CommunicationParallelFFT.C
>>> Compiling CommunicationPartitionGrid.C
>>> Compiling CommunicationReceiveFluxes.C
>>> Compiling CommunicationReceiveHandler.C
>>> Compiling CommunicationSendFluxes.C
>>> Compiling CommunicationShareGrids.C
>>> Compiling CommunicationShareParticles.C
>>> Compiling CommunicationShareStars.C
>>> Compiling CommunicationSyncNumberOfParticles.C
>>> Compiling CommunicationTransferParticlesOpt.C
>>> Compiling CommunicationTransferStarsOpt.C
>>> Compiling CommunicationTransferSubgridParticles.C
>>> Compiling CommunicationTranspose.C
>>> Compiling CommunicationUpdateStarParticleCount.C
>>> Compiling CommunicationUtilities.C
>>> Compiling ConductionBubbleInitialize.C
>>> Compiling ConductionCloudInitialize.C
>>> Compiling ConductionTestInitialize.C
>>> Compiling comp_accel.F
>>> Compiling ComputePotentialFieldLevelZero.C
>>> Compiling ComputeRandomForcingNormalization.C
>>> Compiling ComputeTable.C
>>> Compiling Continue.C
>>> Compiling cool1d_cloudy.F
>>> Compiling cool1d_koyama.F
>>> Compiling cool1d_multi.F
>>> Compiling cool1d_sep.F
>>> Compiling cool1d.F
>>> Compiling cool_multi_lum.F
>>> Compiling cool_multi_time.F
>>> Compiling cool_time.F
>>> Compiling CoolingTestInitialize.C
>>> Compiling CopyParticlesAcrossPeriodicBoundaries.C
>>> Compiling CopyOverlappingParticleMassFields.C
>>> Compiling CopyOverlappingZones.C
>>> Compiling CopyZonesFromOldGrids.C
>>> Compiling CosmoIonizationInitialize.C
>>> Compiling CosmologyComputeExpansionFactor.C
>>> Compiling CosmologyComputeExpansionTimestep.C
>>> Compiling CosmologyComputeTimeFromRedshift.C
>>> Compiling CosmologyGetUnits.C
>>> Compiling CosmologyReadParameters.C
>>> Compiling CosmologySimulationInitialize.C
>>> Compiling CosmologyWriteParameters.C
>>> Compiling cray_x1_fft64.F
>>> Compiling cray_x1_st1_fft64.F
>>> Compiling CreateSiblingList.C
>>> Compiling CreateSmoothedDarkMatterFields.C
>>> Compiling CreateSUBlingList.C
>>> Compiling CreateFluxes.C
>>> Compiling CRShockTubesInitialize.C
>>> Compiling InitializeFluxes.C
>>> Compiling DeleteFluxes.C
>>> Compiling DeleteSUBlingList.C
>>> Compiling DepositBaryons.C
>>> Compiling DepositParticleMassField.C
>>> Compiling DepositParticleMassFlaggingField.C
>>> Compiling DetermineNumberOfNodes.C
>>> Compiling DetermineParallelism.C
>>> Compiling DetermineSubgridSizeExtrema.C
>>> Compiling DoubleMachInitialize.C
>>> Compiling E_ColumnFormat.C
>>> Compiling ealFloat.C
>>> Compiling ealInt.C
>>> Compiling Enzo_Dims_create.C
>>> Compiling EnzoVector.C
>>> Compiling EnzoVector_Exchange.C
>>> Compiling EnzoVector_ExchangeStart.C
>>> Compiling EnzoVector_ExchangeEnd.C
>>> Compiling EnzoVector_test.C
>>> Compiling euler.F
>>> Compiling EvolveHierarchy.C
>>> Compiling EventHooks.C
>>> Compiling execinfo_local.c
>>> Compiling expand_terms.F
>>> Compiling expand_mhd_terms.F
>>> Compiling ExternalBoundary_AddField.C
>>> Compiling ExposeDataHierarchy.C
>>> Compiling ExposeGridHierarchy.C
>>> Compiling ExternalBoundary_AppendForcingToBaryonFields.C
>>> Compiling ExternalBoundary_constructor.C
>>> Compiling ExternalBoundary_DetachForcingFromBaryonFields.C
>>> Compiling ExternalBoundary_DeleteObsoleteFields.C
>>> Compiling ExternalBoundary_IdentifyPhysicalQuantities.C
>>> Compiling ExternalBoundary_InitializeExternalBoundaryFaceIO.C
>>> Compiling ExternalBoundary_Prepare.C
>>> Compiling ExternalBoundary_ReadExternalBoundary.C
>>> Compiling ExternalBoundary_SetDoubleMachBoundary.C
>>> Compiling ExternalBoundary_SetExternalBoundaryIO.C
>>> Compiling ExternalBoundary_SetExternalBoundaryParticles.C
>>> Compiling ExternalBoundary_SetShockPoolBoundary.C
>>> Compiling ExternalBoundary_SetGalaxySimulationBoundary.C
>>> Compiling ExternalBoundary_SetWavePoolBoundary.C
>>> Compiling ExternalBoundary_SetWengenCollidingFlowBoundary.C
>>> Compiling ExternalBoundary_WriteExternalBoundary.C
>>> Compiling ExtraOutput.C
>>> Compiling ExtractSection.C
>>> Compiling FastFourierTransform.C
>>> Compiling FastFourierTransformPrepareComplex.C
>>> Compiling FastFourierTransformSGIMATH.C
>>> Compiling EvolveLevel.C
>>> Compiling FastSiblingLocatorFinalize.C
>>> Compiling FastSiblingLocatorInitialize.C
>>> Compiling FastSiblingLocatorInitializeStaticChainingMesh.C
>>> Compiling feedback_formulae.F
>>> Compiling fft66.F
>>> Compiling fft90.F90
>>> Compiling ffte4X.F90
>>> Compiling ffte_st1.F90
>>> Compiling fft_utils.F
>>> Compiling FinalizeFluxes.C
>>> Compiling FindCube.C
>>> Compiling FindField.C
>>> Compiling FindSubgrids.C
>>> Compiling flow.C
>>> Compiling flux_hll.F
>>> Compiling flux_hllc.F
>>> Compiling flux_twoshock.F
>>> Compiling FOF.C
>>> Compiling FOF_allocate.C
>>> Compiling FOF_cmpfunc.C
>>> Compiling FOF_density.C
>>> Compiling FOF_Finalize.C
>>> Compiling FOF_forcetree.C
>>> Compiling FOF_iindexx.C
>>> Compiling FOF_indexx.C
>>> Compiling FOF_Initialize.C
>>> Compiling FOF_ngbtree.C
>>> Compiling FOF_nrutil.C
>>> Compiling FOF_potential.C
>>> Compiling FOF_properties.C
>>> Compiling FOF_selectb.C
>>> Compiling FOF_sort2_flt_int.C
>>> Compiling FOF_sort2_int.C
>>> Compiling FOF_sort_int.C
>>> Compiling FOF_subfind.C
>>> Compiling FOF_subgroups.C
>>> Compiling FOF_unbind.C
>>> Compiling fortio.F
>>> Compiling fourn.F
>>> Compiling FreeRealMem.c
>>> Compiling FreeExpansionInitialize.C
>>> Compiling FreezeRateData.C
>>> Compiling FriendOfFriend.C
>>> Compiling FSMultiSourceInitialize.C
>>> Compiling FSProb_ComputeOpacityLW.C
>>> Compiling FSProb_constructor.C
>>> Compiling FSProb_destructor.C
>>> Compiling FSProb_FInterface.C
>>> Compiling FSProb_EnforceBoundary.C
>>> Compiling FSProb_Evolve.C
>>> Compiling FSProb_Initialize.C
>>> Compiling FSProb_Dump.C
>>> Compiling FSProb_InitialGuess.F90
>>> Compiling FSProb_SetupSystem.F90
>>> Compiling FSProb_WriteParameters.C
>>> Compiling FSProb_RadiationSource.F90
>>> Compiling FSProb_SetupBoundary.C
>>> Compiling F_ColumnFormat.C
>>> Compiling f_message.F
>>> Compiling Gadget.C
>>> Compiling GadgetInitCoolMemory.C
>>> Compiling GadgetIonizeParamsTable.C
>>> Compiling GadgetMakeCoolingTable.C
>>> Compiling GadgetReadIonizeParams.C
>>> Compiling GalaxySimulationInitialize.C
>>> Compiling GenerateGridArray.C
>>> Compiling GetNodeFreeMemory.C
>>> Compiling GetUnits.C
>>> Compiling gFLDProblem_AnalyticalEqns.F90
>>> Compiling gFLDProblem_ChemistrySource.F90
>>> Compiling gFLDProblem_ComputeRHS.C
>>> Compiling gFLDProblem_ComputeRadiationIntegrals.C
>>> Compiling gFLDProblem_ComputeTemperature.C
>>> Compiling gFLDProblem_ComputeTimeStep.C
>>> Compiling gFLDProblem_constructor.C
>>> Compiling gFLDProblem_CrossSections.C
>>> Compiling gFLDProblem_destructor.C
>>> Compiling gFLDProblem_DiffRHS.F90
>>> Compiling gFLDProblem_Dump.C
>>> Compiling gFLDProblem_EnforceBoundary.C
>>> Compiling gFLDProblem_Evolve.C
>>> Compiling gFLDProblem_FInterface.C
>>> Compiling gFLDProblem_GasEnergySource.F90
>>> Compiling gFLDProblem_InitialGuess.C
>>> Compiling gFLDProblem_Initialize.C
>>> Compiling gFLDProblem_LocalJac.F90
>>> Compiling gFLDProblem_LocalRHS.F90
>>> Compiling gFLDProblem_LocRHS.C
>>> Compiling gFLDProblem_lsetup.C
>>> Compiling gFLDProblem_lsolve.C
>>> Compiling gFLDProblem_MatrixEntries.F90
>>> Compiling gFLDProblem_nlresid.C
>>> Compiling gFLDProblem_Opacity.F90
>>> Compiling gFLDProblem_RadiationSource.F90
>>> Compiling gFLDProblem_RadiationSpectrum.C
>>> Compiling gFLDProblem_SetNewtonBCs.F90
>>> Compiling gFLDProblem_SetupBoundary.C
>>> Compiling gFLDProblem_UpdateBoundary.C
>>> Compiling gFLDProblem_WriteParameters.C
>>> Compiling gFLDSplit_AnalyticChemistry.F90
>>> Compiling gFLDSplit_ChemistrySource.F90
>>> Compiling gFLDSplit_ComputeRadiationIntegrals.C
>>> Compiling gFLDSplit_ComputeTemperature.C
>>> Compiling gFLDSplit_ComputeTimeStep.C
>>> Compiling gFLDSplit_constructor.C
>>> Compiling gFLDSplit_CrossSections.C
>>> Compiling gFLDSplit_destructor.C
>>> Compiling gFLDSplit_Dump.C
>>> Compiling gFLDSplit_EnforceBoundary.C
>>> Compiling gFLDSplit_Evolve.C
>>> Compiling gFLDSplit_FInterface.C
>>> Compiling gFLDSplit_FillRates.C
>>> Compiling gFLDSplit_GasEnergySource.F90
>>> Compiling gFLDSplit_InitialGuess.C
>>> Compiling gFLDSplit_Initialize.C
>>> Compiling gFLDSplit_Opacity.F90
>>> Compiling gFLDSplit_RadiationSource.F90
>>> Compiling gFLDSplit_RadiationSpectrum.C
>>> Compiling gFLDSplit_SetupBoundary.C
>>> Compiling gFLDSplit_SetupSystem.F90
>>> Compiling gFLDSplit_WriteParameters.C
>>> Compiling GravityEquilibriumTestInitialize.C
>>> Compiling Grid_AccelerationBoundaryRoutines.C
>>> Compiling Grid_AccessBaryonFields.C
>>> Compiling Grid_AddBaryonsToGravitatingMassField.C
>>> Compiling Grid_AddExternalAcceleration.C
>>> Compiling Grid_AddExternalPotentialField.C
>>> Compiling Grid_AddFeedbackSphere.C
>>> Compiling Grid_AddFieldMassToMassFlaggingField.C
>>> Compiling Grid_AddFields.C
>>> Compiling Grid_AddOneParticleFromList.C
>>> Compiling Grid_AddOverlappingParticleMassField.C
>>> Compiling Grid_AddParticlesFromList.C
>>> Compiling Grid_AddRandomForcing.C
>>> Compiling Grid_AddToBoundaryFluxes.C
>>> Compiling Grid_AllocateGrids.C
>>> Compiling Grid_AnalyzeTrackPeaks.C
>>> Compiling Grid_AppendForcingToBaryonFields.C
>>> Compiling Grid_ApplyTimeAction.C
>>> Compiling Grid_CalculateAngularMomentum.C
>>> Compiling Grid_ChangeParticleTypeBeforeSN.C
>>> Compiling Grid_CheckForExternalReflections.C
>>> Compiling Grid_CheckForOverlap.C
>>> Compiling Grid_CheckForPossibleOverlap.C
>>> Compiling Grid_CheckForSharedFace.C
>>> Compiling grid_cic.F
>>> Compiling grid_ngp.F
>>> Compiling Grid_CleanUpMovedParticles.C
>>> Compiling Grid_CleanUp.C
>>> Compiling Grid_ClearBoundaryFluxes.C
>>> Compiling Grid_ClearFlaggingField.C
>>> Compiling Grid_ClearGravitatingMassField.C
>>> Compiling Grid_ClearGravitatingMassFieldParticles.C
>>> Compiling Grid_ClearMassFlaggingField.C
>>> Compiling Grid_ClearParticleAccelerations.C
>>> Compiling Grid_ClearParticleMassFlaggingField.C
>>> Compiling Grid_ClusterInitializeGrid.C
>>> Compiling Grid_ClusterSMBHFeedback.C
>>> Compiling Grid_ClusterSMBHEachGridGasMass.C
>>> Compiling Grid_CollapseTestInitializeGrid.C
>>> Compiling Grid_CollectGridInformation.C
>>> Compiling Grid_CollectParticles.C
>>> Compiling Grid_CollectParticleMassFlaggingField.C
>>> Compiling Grid_CollectStars.C
>>> Compiling Grid_CommunicationMoveGrid.C
>>> Compiling Grid_CommunicationReceiveRegion.C
>>> Compiling Grid_CommunicationSendParticles.C
>>> Compiling Grid_CommunicationSendStars.C
>>> Compiling Grid_CommunicationSendRegion.C
>>> Compiling Grid_CommunicationTransferParticlesOpt.C
>>> Compiling Grid_CommunicationTransferStarsOpt.C
>>> Compiling Grid_ComovingExpansionTerms.C
>>> Compiling Grid_ComovingGravitySourceTerm.C
>>> Compiling Grid_ComputeAccelerationFieldExternal.C
>>> Compiling Grid_ComputeAccelerationField.C
>>> Compiling Grid_ComputeAccelerations.C
>>> Compiling Grid_ComputeAccelerationsFromExternalPotential.C
>>> Compiling Grid_ComputeCellCenteredField.C
>>> Compiling Grid_ComputeConductionTimeStep.C
>>> Compiling Grid_ComputeCoolingTime.C
>>> Compiling Grid_ComputeCRDiffusion.C
>>> Compiling Grid_ComputeCRDiffusionTimeStep.C
>>> Compiling Grid_ComputeDustTemperatureField.C
>>> Compiling Grid_ComputeElementalDensity.C
>>> Compiling Grid_ComputeEnergy.C
>>> Compiling Grid_ComputeExternalNohBoundary.C
>>> Compiling Grid_ComputeGammaField.C
>>> Compiling Grid_ComputeHeat.C
>>> Compiling Grid_ComputeLuminosity.C
>>> Compiling Grid_ComputeMetalLineLuminosity.C
>>> Compiling Grid_ComputeOneZoneCollapseFactor.C
>>> Compiling Grid_ComputePressure.C
>>> Compiling Grid_ComputeRandomForcingFields.C
>>> Compiling Grid_ComputeTemperatureField.C
>>> Compiling Grid_ComputeTimeStep.C
>>> Compiling Grid_ComputeVectorAnalysisFields.C
>>> Compiling Grid_ComputeVertexCenteredField.C
>>> Compiling Grid_ComputeXrayEmissivity.C
>>> Compiling Grid_ConductHeat.C
>>> Compiling Grid_ConductionBubbleInitialize.C
>>> Compiling Grid_ConductionCloudInitialize.C
>>> Compiling Grid_ConductionTestInitialize.C
>>> Compiling Grid_constructor.C
>>> Compiling Grid_ConvertTotalEnergyToGasEnergy.C
>>> Compiling Grid_ConvertToNumpy.C
>>> Compiling Grid_CoolingTestResetEnergies.C
>>> Compiling Grid_CoolingTestInitializeGrid.C
>>> Compiling Grid_CopyBaryonFieldToOldBaryonField.C
>>> Compiling Grid_CopyOverlappingMassField.C
>>> Compiling Grid_CopyParentToGravitatingFieldBoundary.C
>>> Compiling Grid_CopyPotentialField.C
>>> Compiling Grid_CopyPotentialToBaryonField.C
>>> Compiling Grid_CopyZonesFromGridCountOnly.C
>>> Compiling Grid_CopyZonesFromGrid.C
>>> Compiling Grid_CorrectForRefinedFluxes.C
>>> Compiling Grid_CosmoIonizationInitializeGrid.C
>>> Compiling Grid_CosmologyInitializeParticles.C
>>> Compiling Grid_CosmologySimulationInitializeGrid.C
>>> Compiling Grid_CreateChildParticles.C
>>> Compiling Grid_CreateFieldArray.C
>>> Compiling Grid_CreateParticleTypeGrouping.C
>>> Compiling Grid_CRShockTubesInitializeGrid.C
>>> Compiling Grid_DebugCheck.C
>>> Compiling Grid_DeleteAllButParticles.C
>>> Compiling Grid_DeleteAllFields.C
>>> Compiling Grid_DeleteBaryonFields.C
>>> Compiling Grid_DeleteFlaggingField.C
>>> Compiling Grid_DeleteObsoleteFields.C
>>> Compiling Grid_DepositBaryons.C
>>> Compiling Grid_DepositMustRefineParticles.C
>>> Compiling Grid_DepositParticlePositions.C
>>> Compiling Grid_DepositParticlePositionsLocal.C
>>> Compiling Grid_DepositPositions.C
>>> Compiling Grid_destructor.C
>>> Compiling Grid_DetachForcingFromBaryonFields.C
>>> Compiling Grid_DoubleMachInitializeGrid.C
>>> Compiling Grid_FastSiblingLocatorAddGrid.C
>>> Compiling Grid_FastSiblingLocatorFindSiblings.C
>>> Compiling Grid_FindAllStarParticles.C
>>> Compiling Grid_FindMassiveParticles.C
>>> Compiling Grid_FindMinimumParticleMass.C
>>> Compiling Grid_FindNewStarParticles.C
>>> Compiling Grid_FindShocks.C
>>> Compiling Grid_FinishFFT.C
>>> Compiling Grid_FlagBufferZones.C
>>> Compiling Grid_FlagCellsToAvoidRefinement.C
>>> Compiling Grid_FlagCellsToAvoidRefinementRegion.C
>>> Compiling Grid_FlagCellsToBeRefinedByCoolingTime.C
>>> Compiling Grid_FlagCellsToBeRefinedByJeansLength.C
>>> Compiling Grid_FlagCellsToBeRefinedByTotalJeansLength.C
>>> Compiling Grid_FlagCellsToBeRefinedByMass.C
>>> Compiling Grid_FlagCellsToBeRefinedByMetallicity.C
>>> Compiling Grid_FlagCellsToBeRefinedByMetalMass.C
>>> Compiling Grid_FlagCellsToBeRefinedByMustRefineRegion.C
>>> Compiling Grid_FlagCellsToBeRefinedByResistiveLength.C
>>> Compiling Grid_FlagCellsToBeRefinedByShear.C
>>> Compiling Grid_FlagCellsToBeRefinedByShocks.C
>>> Compiling Grid_FlagCellsToBeRefinedByShockwaves.C
>>> Compiling Grid_FlagCellsToBeRefinedBySlope.C
>>> Compiling Grid_FlagCellsToBeRefinedBySecondDerivative.C
>>> Compiling Grid_FlagRefinedCells.C
>>> Compiling Grid_FlagGridArray.C
>>> Compiling Grid_FreeExpansionInitializeGrid.C
>>> Compiling Grid_FSMultiSourceInitializeGrid.C
>>> Compiling Grid_GadgetCalculateCooling.C
>>> Compiling Grid_GadgetComputeTemperatureDEF.C
>>> Compiling Grid_GadgetComputeTemperature.C
>>> Compiling Grid_Gadgetconvertutotemp.C
>>> Compiling Grid_GadgetCoolingRate.C
>>> Compiling Grid_GadgetCoolingRateFromU.C
>>> Compiling Grid_GadgetCoolingTime.C
>>> Compiling Grid_Gadgetfindabundancesandrates.C
>>> Compiling Grid_GadgetEquilibriumCooling.C
>>> Compiling Grid_GalaxySimulationInitializeGrid.C
>>> Compiling Grid_GetEnclosedMass.C
>>> Compiling Grid_GetEnclosedMassInShell.C
>>> Compiling Grid_GetProjectedBoundaryFluxes.C
>>> Compiling Grid_GrackleWrapper.C
>>> Compiling Grid_GravityEquilibriumTestInitializeGrid.C
>>> Compiling Grid_Group_WriteGridInterpolate.C
>>> Compiling Grid_Group_WriteGrid.C
>>> Compiling Grid_Group_ReadGrid.C
>>> Compiling New_Grid_WriteGrid.C
>>> Compiling New_Grid_ReadGrid.C
>>> Compiling Grid_IdentifyColourFields.C
>>> Compiling Grid_HydroShockTubesInitializeGrid.C
>>> Compiling Grid_IdentifyShockSpeciesFields.C
>>> Compiling Grid_IdentifyGloverSpeciesFields.C
>>> Compiling Grid_IdentifyNewSubgrids.C
>>> Compiling Grid_IdentifyNewSubgridsSmall.C
>>> Compiling Grid_IdentifyPhysicalQuantities.C
>>> Compiling Grid_IdentifyRadiativeTransferFields.C
>>> Compiling Grid_IdentifySpeciesFields.C
>>> Compiling Grid_ImplosionInitializeGrid.C
>>> Compiling Grid_InheritProperties.C
>>> Compiling Grid_InitializeGravitatingMassField.C
>>> Compiling Grid_InitializeGravitatingMassFieldParticles.C
>>> Compiling Grid_InitializeUniformGrid.C
>>> Compiling Grid_InterpolateAccelerations.C
>>> Compiling Grid_InterpolateBoundaryFromParent.C
>>> Compiling Grid_InterpolateFieldValues.C
>>> Compiling Grid_InterpolateParticlePositions.C
>>> Compiling Grid_InterpolateParticlesToGrid.C
>>> Compiling Grid_InterpolatePositions.C
>>> Compiling Grid_InterpolateStarParticlesToGrid.C
>>> Compiling Grid_KHInitializeGrid.C
>>> Compiling Grid_KHInitializeGridRamp.C
>>> Compiling Grid_MagneticFieldResetter.C
>>> Compiling Grid_MirrorStarParticles.C
>>> Compiling Grid_MoveAllParticles.C
>>> Compiling Grid_MoveAllStars.C
>>> Compiling Grid_MoveParticlesFOF.C
>>> Compiling Grid_MoveSubgridParticlesFast.C
>>> Compiling Grid_MoveSubgridParticles.C
>>> Compiling Grid_MoveSubgridStars.C
>>> Compiling Grid_MultiSpeciesHandler.C
>>> Compiling Grid_MustRefineParticlesFlagFromList.C
>>> Compiling Grid_MustRefineParticlesFlagInRegion.C
>>> Compiling Grid_NestedCosmologySimulationInitializeGrid.C
>>> Compiling Grid_NohInitializeGrid.C
>>> Compiling Grid_OneZoneFreefallTestInitializeGrid.C
>>> Compiling Grid_OutputAsParticleData.C
>>> Compiling Grid_OutputStarParticleInformation.C
>>> Compiling Grid_ParticleSplitter.C
>>> Compiling Grid_PoissonSolver.C
>>> Compiling Grid_PoissonSolverCGA.C
>>> Compiling Grid_PoissonSolverTestInitializeGrid.C
>>> Compiling Grid_PrepareBoundaryFluxes.C
>>> Compiling Grid_PrepareFFT.C
>>> Compiling Grid_PrepareGreensFunction.C
>>> Compiling Grid_PrepareGridDerivedQuantities.C
>>> Compiling Grid_PrepareGrid.C
>>> Compiling Grid_PreparePeriodicGreensFunction.C
>>> Compiling Grid_PreparePotentialField.C
>>> Compiling Grid_PrepareRandomForcingNormalization.C
>>> Compiling Grid_PressurelessCollapseInitialize.C
>>> Compiling Grid_ProjectSolutionToParentGrid.C
>>> Compiling Grid_ProjectToPlane.C
>>> Compiling Grid_ProjectToPlane2.C
>>> Compiling Grid_ProtostellarCollapseInitializeGrid.C
>>> Compiling Grid_PutSinkRestartInitialize.C
>>> Compiling Grid_RadHydroConstTestInitializeGrid.C
>>> Compiling Grid_RadHydroGreyMarshakWaveInitializeGrid.C
>>> Compiling Grid_RadHydroPulseTestInitializeGrid.C
>>> Compiling Grid_RadHydroRadShockInitializeGrid.C
>>> Compiling Grid_RadHydroStreamTestInitializeGrid.C
>>> Compiling Grid_RadiationComputeDensities.C
>>> Compiling Grid_RadiatingShockInitializeGrid.C
>>> Compiling Grid_ReadGrid.C
>>> Compiling Grid_CosmologyReadParticles3D.C
>>> Compiling Grid_ReadHierarchyInformationHDF5.C
>>> Compiling Grid_ReadRandomForcingFields.C
>>> Compiling Grid_RemoveForcingFromBaryonFields.C
>>> Compiling Grid_RemoveParticle.C
>>> Compiling Grid_RestoreEnergyConsistency.C
>>> Compiling Grid_ReturnFluxDims.C
>>> Compiling Grid_ReturnGridInfo.C
>>> Compiling Grid_ReturnNumberOfStarParticles.C
>>> Compiling Grid_ReturnParticleEntry.C
>>> Compiling Grid_ReturnStarStatistics.C
>>> Compiling Grid_RHIonizationClumpInitializeGrid.C
>>> Compiling Grid_RHIonizationSteepInitializeGrid.C
>>> Compiling Grid_RHIonizationTestInitializeGrid.C
>>> Compiling Grid_RotatingCylinderInitialize.C
>>> Compiling Grid_RotatingDiskInitializeGrid.C
>>> Compiling Grid_RotatingSphereInitialize.C
>>> Compiling Grid_SedovBlastInitializeGrid.C
>>> Compiling Grid_SedovBlastInitializeGrid3D.C
>>> Compiling Grid_SetExternalBoundaryValues.C
>>> Compiling Grid_SetFlaggingField.C
>>> Compiling Grid_SetFlaggingFieldMultiRefineRegions.C
>>> Compiling Grid_SetFlaggingFieldStaticRegions.C
>>> Compiling Grid_SetIsolatedPotentialBoundary.C
>>> Compiling Grid_SetMinimumSupport.C
>>> Compiling Grid_SetNewParticleIndex.C
>>> Compiling Grid_SetParticleMassFlaggingField.C
>>> Compiling Grid_ShearingBoxInitializeGrid.C
>>> Compiling Grid_ShearingBox2DInitializeGrid.C
>>> Compiling Grid_ShearingBoxStratifiedInitializeGrid.C
>>> Compiling Grid_ShocksHandler.C
>>> Compiling Grid_SolveForPotential.C
>>> Compiling Grid_SolveHydroEquations.C
>>> Compiling Grid_SolveOneZoneFreefall.C
>>> Compiling Grid_SolveMHD_Li.C
>>> Compiling Grid_SolvePPM_DE.C
>>> Compiling Grid_SolveRadiativeCooling.C
>>> Compiling Grid_SolveRateAndCoolEquations.C
>>> Compiling Grid_SolveRateEquations.C
>>> Compiling Grid_SortParticlesByNumber.C
>>> Compiling Grid_SortParticlesByType.C
>>> Compiling Grid_SphericalInfallGetProfile.C
>>> Compiling Grid_SphericalInfallInitializeGrid.C
>>> Compiling Grid_StarParticleHandler.C
>>> Compiling Grid_StratifiedMediumExplosionInitialize.C
>>> Compiling Grid_SupernovaRestartInitialize.C
>>> Compiling Grid_SubtractAccretedMassFromSphere.C
>>> Compiling Grid_TestGravityCheckResults.C
>>> Compiling Grid_TestGravityInitializeGrid.C
>>> Compiling Grid_TestGravityMotionInitializeGrid.C
>>> Compiling Grid_TestGravitySphereCheckResults.C
>>> Compiling Grid_TestGravitySphereInitializeGrid.C
>>> Compiling Grid_TestOrbitInitializeGrid.C
>>> Compiling Grid_TestStarParticleInitializeGrid.C
>>> Compiling Grid_TracerParticleCreateParticles.C
>>> Compiling Grid_TracerParticleOutputData.C
>>> Compiling Grid_TracerParticleSetVelocity.C
>>> Compiling Grid_TransferSubgridParticles.C
>>> Compiling Grid_TransferSubgridStars.C
>>> Compiling Grid_TurbulenceSimulationInitialize.C
>>> Compiling Grid_UpdateParticlePosition.C
>>> Compiling Grid_UpdateParticleVelocity.C
>>> Compiling Grid_UpdateStarParticles.C
>>> Compiling Grid_WriteCubeInterpolate.C
>>> Compiling Grid_WriteCube.C
>>> Compiling Grid_WriteGridInterpolate.C
>>> Compiling Grid_WriteGrid.C
>>> Compiling Grid_WriteGridX.C
>>> Compiling Grid_WriteHierarchyInformationHDF5.C
>>> Compiling Grid_WriteMemoryMap.C
>>> Compiling Grid_WriteNewMovieData.C
>>> Compiling Grid_WriteNewMovieDataSeparateParticles.C
>>> Compiling Grid_WriteStuff.C
>>> Compiling Grid_WriteTaskMap.C
>>> Compiling Grid_ZeldovichPancakeInitializeGrid.C
>>> Compiling Grid_ZeroSolutionUnderSubgrid.C
>>> Compiling Grid_ZeusSolver.C
>>> Compiling Grid_xEulerSweep.C
>>> Compiling Grid_yEulerSweep.C
>>> Compiling Grid_zEulerSweep.C
>>> Compiling Group_ReadAllData.C
>>> Compiling Group_ReadDataHierarchy.C
>>> Compiling Group_WriteAllData.C
>>> Compiling Group_WriteDataHierarchy.C
>>> Compiling h5utilities.C
>>> Compiling HilbertCurve3D.C
>>> Compiling Hierarchy_DeleteHierarchyEntry.C
>>> Compiling HydroShockTubesInitialize.C
>>> Compiling ibm_fft64.F
>>> Compiling ibm_st1_fft64.F
>>> Compiling I_ColumnFormat.C
>>> Compiling IdentifyNewSubgridsBySignature.C
>>> Compiling ImplosionInitialize.C
>>> Compiling InexactNewton.C
>>> Compiling InexactNewton_constructor.C
>>> Compiling InexactNewton_destructor.C
>>> Compiling InexactNewton_InexactNewtonForce.C
>>> Compiling InexactNewton_LinesearchStepSize.C
>>> Compiling InexactNewton_Solve.C
>>> Compiling InitializeCloudyCooling.C
>>> Compiling InitializeEquilibriumCoolData.C
>>> Compiling InitializeGadgetEquilibriumCoolData.C
>>> Compiling InitializeLocal.C
>>> Compiling InitializeLymanWernerTable.C
>>> Compiling InitializeHM12Photorates.C
>>> Compiling InitializeMovieFile.C
>>> Compiling InitializeNew.C
>>> Compiling InitializePythonInterface.C
>>> Compiling InitializeRadiationFieldData.C
>>> Compiling InitializeRadiativeTransferSpectrumTable.C
>>> Compiling InitializeRateData.C
>>> Compiling InitialLoadBalanceRootGrids.C
>>> Compiling init_random_seed.F
>>> Compiling interp1d.F
>>> Compiling interp2d.F
>>> Compiling interp3d.F
>>> Compiling interpolate.F
>>> Compiling InterpretCommandLine.C
>>> Compiling inteuler.F
>>> Compiling intlgrg.F
>>> Compiling int_lin3d.F
>>> Compiling intrmp.F
>>> Compiling int_spline.F
>>> Compiling intpos.F
>>> Compiling intprim.F
>>> Compiling intvar.F
>>> Compiling Isdigit.C
>>> Compiling KHInitialize.C
>>> Compiling LevelHierarchy_AddLevel.C
>>> Compiling lgrg.F
>>> Compiling ListIO.C
>>> Compiling LoadBalanceHilbertCurve.C
>>> Compiling LoadBalanceHilbertCurveRootGrids.C
>>> Compiling LoadBalanceSimulatedAnnealing.C
>>> Compiling MagneticFieldResetter.C
>>> Compiling mbh_maker.C
>>> Compiling mcooling.F
>>> Compiling MakeFieldConservative.C
>>> Compiling MemoryAllocationRoutines.C
>>> Compiling MemoryPoolRoutines.C
>>> Compiling MersenneTwister.C
>>> Compiling mg_calc_defect.F
>>> Compiling mg_prolong2.F
>>> Compiling mg_prolong.F
>>> Compiling mg_relax.F
>>> Compiling mg_restrict.F
>>> Compiling mkl_st1.F90
>>> Compiling Mpich_V1_Dims_create.c
>>> Compiling multi_cool.F
>>> Compiling MultigridSolver.C
>>> Compiling mused.C
>>> Compiling NestedCosmologySimulationInitialize.C
>>> Compiling ngpinterp.F
>>> Compiling ngp_deposit.F
>>> Compiling ngp_deposit_c.c
>>> Compiling NohInitialize.C
>>> Compiling nr_1d.F90
>>> Compiling nr_2d.F90
>>> Compiling nr_3d.F90
>>> Compiling nr_st1.F90
>>> Compiling NullProblem.C
>>> Compiling OneZoneFreefallTestInitialize.C
>>> Compiling OutputAsParticleData.C
>>> Compiling OutputCoolingTimeOnly.C
>>> Compiling OutputDustTemperatureOnly.C
>>> Compiling OutputFromEvolveLevel.C
>>> Compiling OutputLevelInformation.C
>>> Compiling OutputPotentialFieldOnly.C
>>> Compiling OutputSmoothedDarkMatterOnly.C
>>> Compiling P_ColumnFormat.C
>>> Compiling ParticleMergeRoutines.C
>>> Compiling ParticleSplitter.C
>>> Compiling performance.C
>>> Compiling pgas2d_dual.F
>>> Compiling pgas2d.F
>>> Compiling PoissonSolverTestInitialize.C
>>> Compiling pop3_color_maker.F
>>> Compiling pop3_color_maker_c.c
>>> Compiling pop3_maker.F
>>> Compiling pop3_properties.F
>>> Compiling power_of_2.F
>>> Compiling prefort2.F
>>> Compiling PrepareDensityField.C
>>> Compiling PrepareGravitatingMassField.C
>>> Compiling PrepareIsolatedGreensFunction.C
>>> Compiling PressurelessCollapseInitialize.C
>>> Compiling ProblemType.C
>>> Compiling ProblemType_RotatingCylinder.C
>>> Compiling ProblemType_CollapsingCoolingCloud.C
>>> Compiling ProblemType_ExplodingCloud.C
>>> Compiling ProblemType_MagneticReconnection.C
>>> Compiling ProblemType_AgoraRestart.C
>>> Compiling ProcMap.C
>>> Compiling project.F
>>> Compiling projectbool.F
>>> Compiling ProjectToPlane.C
>>> Compiling ProjectToPlane2.C
>>> Compiling projplane.F
>>> Compiling prolong.F
>>> Compiling prolong_tsc.F
>>> Compiling ProtostellarCollapseInitialize.C
>>> Compiling ProtoSubgrid_AcceptableGrid.C
>>> Compiling ProtoSubgrid_CleanUp.C
>>> Compiling ProtoSubgrid_ComputeSecondDerivative.C
>>> Compiling ProtoSubgrid_ComputeSignature.C
>>> Compiling ProtoSubgrid_constructor.C
>>> Compiling ProtoSubgrid_CopyFlaggedZonesFromGrid.C
>>> Compiling ProtoSubgrid_CopyToNewSubgrid.C
>>> Compiling ProtoSubgrid_FindGridsByZeroSignature.C
>>> Compiling ProtoSubgrid_LargeAxisRatioCheck.C
>>> Compiling ProtoSubgrid_ReturnNthLongestDimension.C
>>> Compiling ProtoSubgrid_ShrinkToMinimumSize.C
>>> Compiling PutSinkRestartInitialize.C
>>> Compiling QuickSortAndDrag.C
>>> Compiling RadHydroConstTestInitialize.C
>>> Compiling RadHydroGreyMarshakWaveInitialize.C
>>> Compiling RadHydroPulseTestInitialize.C
>>> Compiling RadHydroRadShockInitialize.C
>>> Compiling RadHydroStreamTestInitialize.C
>>> Compiling RadiationGetUnits.C
>>> Compiling RadiatingShockInitialize.C
>>> Compiling RadiationFieldCalculateRates.C
>>> Compiling RadiationFieldLymanWernerTable.C
>>> Compiling RadiationFieldUpdate.C
>>> Compiling ReadAllData.C
>>> Compiling ReadAttr.C
>>> Compiling ReadEvolveRefineFile.C
>>> Compiling read_bt.C
>>> Compiling read_bv.C
>>> Compiling ReadDataHierarchy.C
>>> Compiling ReadFile.C
>>> Compiling ReadGridFile.C
>>> Compiling ReadIntFile.C
>>> Compiling ReadMetalCoolingRates.C
>>> Compiling ReadMetalCoolingRatios.C
>>> Compiling ReadParameterFile.C
>>> Compiling ReadRadiationData.C
>>> Compiling ReadStarParticleData.C
>>> Compiling ReadUnits.C
>>> Compiling RebuildHierarchy.C
>>> Compiling RecalibrateAccretingMass.C
>>> Compiling RecalibrateMBHFeedbackThermalRadius.C
>>> Compiling ReduceFragmentation.C
>>> Compiling Reduce_Times.C
>>> Compiling remap.F
>>> Compiling ReportMemoryUsage.C
>>> Compiling ReturnWallTime.C
>>> Compiling RHIonizationClumpInitialize.C
>>> Compiling RHIonizationSteepInitialize.C
>>> Compiling RHIonizationTestInitialize.C
>>> Compiling rotate2d.F
>>> Compiling rotate3d.F
>>> Compiling RotatingCylinderInitialize.C
>>> Compiling RotatingDiskInitialize.C
>>> Compiling RotatingSphereInitialize.C
>>> Compiling s66_st1.F90
>>> Compiling s90_st1.F90
>>> Compiling SearchUtilities.C
>>> Compiling SedovBlastInitialize.C
>>> Compiling select_fft.F90
>>> Compiling SetBoundaryConditions.C
>>> Compiling SetDefaultGlobalValues.C
>>> Compiling SetLevelTimeStep.C
>>> Compiling SetEvolveRefineRegion.C
>>> Compiling sgi_st1_fft64.F90
>>> Compiling ShearingBoxInitialize.C
>>> Compiling ShearingBox2DInitialize.C
>>> Compiling ShearingBoxStratifiedInitialize.C
>>> Compiling ShellSortAndDrag.C
>>> Compiling ShockInABoxInitialize.C
>>> Compiling ShockPoolInitialize.C
>>> Compiling sink_maker.C
>>> Compiling smooth_deposit.F
>>> Compiling smooth_deposit_c.c
>>> Compiling smooth.F
>>> Compiling solve_cool.F
>>> Compiling solve_rate.F
>>> Compiling solve_rate_cool.F
>>> Compiling SortCompareFunctions.C
>>> Compiling SphericalInfallInitialize.C
>>> Compiling StarListRoutines.C
>>> Compiling StarParticleAccretion.C
>>> Compiling StarParticleAddFeedback.C
>>> Compiling StarParticleCountOnly.C
>>> Compiling StarParticleDeath.C
>>> Compiling StarParticleFinalize.C
>>> Compiling StarParticleFindAll.C
>>> Compiling StarParticleInitialize.C
>>> Compiling StarParticleMergeNew.C
>>> Compiling StarParticleMergeMBH.C
>>> Compiling StarParticlePopIII_IMFInitialize.C
>>> Compiling StarParticleSetRefinementLevel.C
>>> Compiling StarParticleSubtractAccretedMass.C
>>> Compiling StarRoutines.C
>>> Compiling Star_Accrete.C
>>> Compiling Star_AccreteAngularMomentum.C
>>> Compiling Star_ActivateNewStar.C
>>> Compiling Star_ApplyFeedbackTrue.C
>>> Compiling Star_AssignAccretedAngularMomentum.C
>>> Compiling Star_AssignFinalMassFromIMF.C
>>> Compiling Star_CalculateFeedbackParameters.C
>>> Compiling Star_CalculateMassAccretion.C
>>> Compiling Star_CalculateMassLoss.C
>>> Compiling Star_ComputePhotonRates.C
>>> Compiling Star_DeleteCopyInGridGlobal.C
>>> Compiling Star_DeleteParticle.C
>>> Compiling Star_DisableParticle.C
>>> Compiling Star_FindFeedbackSphere.C
>>> Compiling Star_HitEndpoint.C
>>> Compiling Star_IsARadiationSource.C
>>> Compiling Star_MirrorToParticle.C
>>> Compiling Star_MultiplyAccretionRate.C
>>> Compiling Star_RemoveMassFromStarAfterFeedback.C
>>> Compiling Star_SetFeedbackFlag.C
>>> Compiling Star_SphereContained.C
>>> Compiling Star_SubtractAccretedMassFromCell.C
>>> Compiling star_feedback_pn_snia.F
>>> Compiling star_maker1.F
>>> Compiling star_maker2.F
>>> Compiling star_maker3mom.F
>>> Compiling star_maker3.F
>>> Compiling star_maker4.F
>>> Compiling star_maker5.F
>>> Compiling star_maker7.F
>>> Compiling star_maker8.C
>>> Compiling star_maker9.C
>>> Compiling star_maker10.F
>>> Compiling star_maker_h2reg.F
>>> Compiling star_maker_ssn.F
>>> Compiling StratifiedMediumExplosionInitialize.C
>>> Compiling SupernovaRestartInitialize.C
>>> Compiling SysMkdir.C
>>> Compiling TestGravityCheckResults.C
>>> Compiling TestGravityInitialize.C
>>> Compiling TestGravityMotion.C
>>> Compiling TestGravitySphereCheckResults.C
>>> Compiling TestGravitySphereInitialize.C
>>> Compiling TestOrbitInitialize.C
>>> Compiling TestStarParticleInitialize.C
>>> Compiling TracerParticleCreation.C
>>> Compiling TransposeRegionOverlap.C
>>> Compiling tscint1d.F
>>> Compiling tscint2d.F
>>> Compiling tscint3d.F
>>> Compiling TurbulenceSimulationInitialize.C
>>> Compiling turboinit.F
>>> Compiling twoshock.F
>>> Compiling UpdateFromFinerGrids.C
>>> Compiling UpdateLocalDatabase.C
>>> Compiling UpdateParticlePositions.C
>>> Compiling utilities.F
>>> Compiling uuid.C
>>> Compiling uuid/clear.c
>>> Compiling uuid/compare.c
>>> Compiling uuid/copy.c
>>> Compiling uuid/gen_uuid.c
>>> Compiling uuid/isnull.c
>>> Compiling uuid/pack.c
>>> Compiling uuid/parse.c
>>> Compiling uuid/unpack.c
>>> Compiling uuid/unparse.c
>>> Compiling uuid/uuid_time.c
>>> Compiling libconfig/grammar.c
>>> Compiling libconfig/libconfig.c
>>> Compiling libconfig/scanctx.c
>>> Compiling libconfig/scanner.c
>>> Compiling libconfig/strbuf.c
>>> Compiling wall_clock.c
>>> Compiling WavePoolInitialize.C
>>> Compiling wrapper1d.F90
>>> Compiling wrapper2d.F90
>>> Compiling wrapper3d.F90
>>> Compiling WriteAllDataCubes.C
>>> Compiling WriteAllData.C
>>> Compiling write_bt.C
>>> Compiling write_bv.C
>>> Compiling WriteConfigure.C
>>> Compiling WriteDataCubes.C
>>> Compiling WriteDataHierarchy.C
>>> Compiling WriteHDF5HierarchyFile.C
>>> Compiling WriteMemoryMap.C
>>> Compiling WriteParameterFile.C
>>> Compiling WriteRadiationData.C
>>> Compiling WriteStarParticleData.C
>>> Compiling WriteStreamData.C
>>> Compiling WriteStringAttr.C
>>> Compiling WriteTaskMap.C
>>> Compiling WriteTracerParticleData.C
>>> Compiling WriteUnits.C
>>> Compiling ZeldovichPancakeInitialize.C
>>> Compiling ZeusUtilities.C
>>> Compiling ZeusSource.C
>>> Compiling Zeus_xTransport.C
>>> Compiling Zeus_yTransport.C
>>> Compiling Zeus_zTransport.C
>>> Compiling Grid_MHD_Diagnose.C
>>> Compiling Grid_MHDCTEnergyToggle.C
>>> Compiling MHDBlastInitialize.C
>>> Compiling Grid_MHDBlastInitializeGrid.C
>>> Compiling Grid_MHD_ProjectFace.C
>>> Compiling Grid_ClearAvgElectricField.C
>>> Compiling ExternalBoundary_SetMagneticBoundary.C
>>> Compiling mhd_dt.F
>>> Compiling Grid_MHD_UpdateMagneticField.C
>>> Compiling Grid_MHDOrszagTangInitGrid.C
>>> Compiling Grid_MHD_SetupDims.C
>>> Compiling MHDOrszagTangInit.C
>>> Compiling MHDCT_ParameterJuggle.C
>>> Compiling MHDCTSetupFieldLabels.C
>>> Compiling mhd_li.F
>>> Compiling mhd_li_ms.F
>>> Compiling Grid_CenterMagneticField.C
>>> Compiling Grid_ComputeElectricField.C
>>> Compiling Grid_MHD_Curl.C
>>> Compiling pde1dsolver_mhd.F
>>> Compiling pde1dsolver_mhd_ms.F
>>> Compiling pde1dsolver_mhd_NewMS.F
>>> Compiling riemann_mhd.F
>>> Compiling mhd_hlld_isothermal.F
>>> Compiling mhd_hlld_adiabatic.F
>>> Compiling DebugTools.C
>>> Compiling Grid_MHD_CID.C
>>> Compiling Grid_MHD_ProlongAllocate.C
>>> Compiling mhd_interpolate.F
>>> Compiling Grid_MHD_SendOldFineGrids.C
>>> Compiling StochasticForcing_CommunicationBroadcastFlags.C
>>> Compiling StochasticForcing_CommunicationBroadcastSpectrum.C
>>> Compiling StochasticForcing_constructor.C
>>> Compiling StochasticForcing_destructor.C
>>> Compiling StochasticForcing_Evolve.C
>>> Compiling StochasticForcing_Init.C
>>> Compiling StochasticForcing_GaussDeviate.C
>>> Compiling StochasticForcing_ReadAndWrite.C
>>> Compiling ComputeStochasticForcing.C
>>> Compiling Grid_FTStochasticForcing.C
>>> Compiling DrivenFlowInitialize.C
>>> Compiling Grid_DrivenFlowInitializeGrid.C
>>> Compiling Grid_Phases.C
>>> Compiling CommunicationLoadBalancePhotonGrids.C
>>> Compiling CommunicationNonblockingRoutines.C
>>> Compiling CommunicationReceiverPhotons.C
>>> Compiling CommunicationSyncNumberOfPhotons.C
>>> Compiling CommunicationTransferPhotons.C
>>> Compiling CreateSourceClusteringTree.C
>>> Compiling DeletePhotonPackage.C
>>> Compiling DeleteRadiationSource.C
>>> Compiling EvolvePhotons.C
>>> Compiling FindCrossSection.C
>>> Compiling FindRootGrid.C
>>> Compiling FindSuperSource.C
>>> Compiling FindSuperSourceByPosition.C
>>> Compiling FLDCorrectForImpulses.C
>>> Compiling Grid_AddH2Dissociation.C
>>> Compiling Grid_AddH2DissociationFromSources.C
>>> Compiling Grid_AddH2DissociationFromTree.C
>>> Compiling Grid_AddRadiationImpulse.C
>>> Compiling Grid_AddRadiationPressureAcceleration.C
>>> Compiling Grid_AllocateInterpolatedRadiation.C
>>> Compiling Grid_CheckSubgridMarker.C
>>> Compiling Grid_CommunicationSendPhotonPackages.C
>>> Compiling Grid_CommunicationSendSubgridMarker.C
>>> Compiling Grid_ComputePhotonTimestep.C
>>> Compiling Grid_ComputePhotonTimestepHII.C
>>> Compiling Grid_ComputePhotonTimestepTau.C
>>> Compiling Grid_ConvertToCellCenteredRadiation.C
>>> Compiling Grid_CorrectRadiationIncompleteness.C
>>> Compiling Grid_CreateEmissivityLW.C
>>> Compiling Grid_DeleteEmissivity.C
>>> Compiling Grid_DeletePhotonPackages.C
>>> Compiling Grid_DetectIonizationFrontApprox.C
>>> Compiling Grid_ElectronFractionEstimate.C
>>> Compiling Grid_ExtraFunction.C
>>> Compiling Grid_FinalizeRadiationFields.C
>>> Compiling Grid_FindPhotonNewGrid.C
>>> Compiling Grid_FlagCellsToBeRefinedByOpticalDepth.C
>>> Compiling Grid_IdentifyRadiationPressureFields.C
>>> Compiling Grid_InitializeRadiativeTransferFields.C
>>> Compiling Grid_InitializeSource.C
>>> Compiling Grid_InterpolateRadiationFromParent.C
>>> Compiling Grid_MergePausedPhotonPackages.C
>>> Compiling Grid_RegridPausedPhotonPackage.C
>>> Compiling Grid_MoveAllPhotonPackages.C
>>> Compiling Grid_PhotonPeriodicBoundary.C
>>> Compiling Grid_PhotonTestInitializeGrid.C
>>> Compiling Grid_PhotonTestRestartInitializeGrid.C
>>> Compiling Grid_PhotonSortLinkedLists.C
>>> Compiling Grid_ReassignSuperSources.C
>>> Compiling Grid_ReturnSubgridMarker.C
>>> Compiling Grid_SetSubgridMarkerFromParent.C
>>> Compiling Grid_SetSubgridMarkerFromSibling.C
>>> Compiling Grid_SetSubgridMarkerFromSubgrid.C
>>> Compiling Grid_SubgridMarkerPostParallel.C
>>> Compiling Grid_Shine.C
>>> Compiling Grid_TransportPhotonPackages.C
>>> Compiling Grid_WalkPhotonPackage.C
>>> Compiling LinkedListRoutines.C
>>> Compiling PhotonPackageRoutines.C
>>> Compiling PhotonTestInitialize.C
>>> Compiling PhotonTestRestartInitialize.C
>>> Compiling RadiativeTransferCallFLD.C
>>> Compiling RadiativeTransferComputeTimestep.C
>>> Compiling RadiativeTransferHealpixRoutines.C
>>> Compiling RadiativeTransferLoadBalanceRevert.C
>>> Compiling RadiativeTransferInitialize.C
>>> Compiling RadiativeTransferPrepare.C
>>> Compiling RadiativeTransferReadParameters.C
>>> Compiling RadiativeTransferWriteParameters.C
>>> Compiling RadiativeTransferMoveLocalPhotons.C
>>> Compiling ReadPhotonSources.C
>>> Compiling ReadRadiativeTransferSpectrumTable.C
>>> Compiling ReassignSuperSources.C
>>> Compiling RestartPhotons.C
>>> Compiling ReturnValuesFromSpectrumTable.C
>>> Compiling SetSubgridMarker.C
>>> Compiling SplitPhotonPackage.C
>>> Compiling StarParticleRadTransfer.C
>>> Compiling TemperatureFieldToolsForComptonHeating.C
>>> Compiling WritePhotonSources.C
>>> Compiling hydro_rk/ModifiedBesselFunctions.C
>>> Compiling hydro_rk/AGNDiskInitialize.C
>>> Compiling hydro_rk/Collapse1DInitialize.C
>>> Compiling hydro_rk/Collapse3DInitialize.C
>>> Compiling hydro_rk/ComputeDednerWaveSpeeds.C
>>> Compiling hydro_rk/EvolveLevel_RK2.C
>>> Compiling hydro_rk/GalaxyDiskInitialize.C
>>> Compiling hydro_rk/Grid_AddSelfGravity.C
>>> Compiling hydro_rk/Grid_AddViscosity.C
>>> Compiling hydro_rk/Grid_AGNDiskInitializeGrid.C
>>> Compiling hydro_rk/Grid_Collapse1DInitializeGrid.C
>>> Compiling hydro_rk/Grid_Collapse3DInitializeGrid.C
>>> Compiling hydro_rk/Grid_CopyOldBaryonFieldToBaryonField.C
>>> Compiling hydro_rk/Grid_GalaxyDiskInitializeGrid.C
>>> Compiling hydro_rk/Grid_Hydro3D.C
>>> Compiling hydro_rk/Grid_ReturnHydroRKPointers.C
>>> Compiling hydro_rk/Grid_ReturnOldHydroRKPointers.C
>>> Compiling hydro_rk/Grid_RungeKutta2_1stStep.C
>>> Compiling hydro_rk/Grid_RungeKutta2_2ndStep.C
>>> Compiling hydro_rk/Grid_SaveSubgridFluxes.C
>>> Compiling hydro_rk/Grid_SetFloor.C
>>> Compiling hydro_rk/Grid_SetNumberOfColours.C
>>> Compiling hydro_rk/Grid_SourceTerms.C
>>> Compiling hydro_rk/Grid_TurbulenceInitializeGrid.C
>>> Compiling hydro_rk/Grid_UpdatePrim.C
>>> Compiling hydro_rk/Grid_ZeroFluxes.C
>>> Compiling hydro_rk/Grid_PrepareVelocityNormalization.C
>>> Compiling hydro_rk/Grid_PrepareAlfvenVelocityNormalization.C
>>> Compiling hydro_rk/Grid_NormalizeVelocities.C
>>> Compiling hydro_rk/Grid_NormalizeMagneticFields.C
>>> Compiling hydro_rk/Turbulence_Generator.C
>>> Compiling hydro_rk/HLL_PLM.C
>>> Compiling hydro_rk/HLL_PPM.C
>>> Compiling hydro_rk/HLLC_PLM.C
>>> Compiling hydro_rk/HydroLine.C
>>> Compiling hydro_rk/HydroSweepX.C
>>> Compiling hydro_rk/HydroSweepY.C
>>> Compiling hydro_rk/HydroSweepZ.C
>>> Compiling hydro_rk/LLF_PLM.C
>>> Compiling hydro_rk/LLF_Zero.C
>>> Compiling hydro_rk/LLF_Zero_MHD.C
>>> Compiling hydro_rk/Rec_PLM.C
>>> Compiling hydro_rk/Rec_ConsPLM.C
>>> Compiling hydro_rk/Rec_PPM.C
>>> Compiling hydro_rk/Riemann_HLL.C
>>> Compiling hydro_rk/Riemann_HLLC.C
>>> Compiling hydro_rk/Riemann_LLF.C
>>> Compiling hydro_rk/TurbulenceInitialize.C
>>> Compiling hydro_rk/CollapseMHD3DInitialize.C
>>> Compiling hydro_rk/Grid_AddAmbipolarDiffusion.C
>>> Compiling hydro_rk/Grid_AddResistivity.C
>>> Compiling hydro_rk/Grid_CollapseMHD3DInitializeGrid.C
>>> Compiling hydro_rk/Grid_MHD1DTestInitializeGrid.C
>>> Compiling hydro_rk/Grid_MHD1DTestWavesInitializeGrid.C
>>> Compiling hydro_rk/Grid_MHD2DTestInitializeGrid.C
>>> Compiling hydro_rk/Grid_MHD3DTestInitializeGrid.C
>>> Compiling hydro_rk/Grid_MHD3D.C
>>> Compiling hydro_rk/Grid_MHDRK2_1stStep.C
>>> Compiling hydro_rk/Grid_MHDRK2_2ndStep.C
>>> Compiling hydro_rk/Grid_MHDSourceTerms.C
>>> Compiling hydro_rk/Grid_MHDTurbulenceInitializeGrid.C
>>> Compiling hydro_rk/Grid_MHDDecayingRandomFieldInitializeGrid.C
>>> Compiling hydro_rk/Grid_ReduceWindBoundary.C
>>> Compiling hydro_rk/Grid_SaveMHDSubgridFluxes.C
>>> Compiling hydro_rk/Grid_UpdateMHDPrim.C
>>> Compiling hydro_rk/Grid_UpdateElectronDensity.C
>>> Compiling hydro_rk/HLL_PLM_MHD.C
>>> Compiling hydro_rk/LLF_PLM_MHD.C
>>> Compiling hydro_rk/HLL_PPM_MHD.C
>>> Compiling hydro_rk/HLLD_PLM_MHD.C
>>> Compiling hydro_rk/HLLD_Zero_MHD.C
>>> Compiling hydro_rk/MHD1DTestInitialize.C
>>> Compiling hydro_rk/MHD1DTestWavesInitialize.C
>>> Compiling hydro_rk/MHD2DTestInitialize.C
>>> Compiling hydro_rk/MHD3DTestInitialize.C
>>> Compiling hydro_rk/MHDLine.C
>>> Compiling hydro_rk/MHDSweepX.C
>>> Compiling hydro_rk/MHDSweepY.C
>>> Compiling hydro_rk/MHDSweepZ.C
>>> Compiling hydro_rk/MHDTurbulenceInitialize.C
>>> Compiling hydro_rk/MHDDecayingRandomFieldInitialize.C
>>> Compiling hydro_rk/Riemann_HLL_MHD.C
>>> Compiling hydro_rk/Riemann_HLLD_MHD.C
>>> Compiling hydro_rk/Riemann_LLF_MHD.C
>>> Linking enzo executable. Type  cat out.compile  in case it fails.
>>> make: *** [Makefile:137: enzo.exe] Error 1
>>>
>>>
>>> _______________________________________________
>>> yt-users mailing list
>>> yt-users at lists.spacepope.org
>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>>
>>>
>>
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