[yt-users] path_element_z error
David Collins
dcollins4096 at gmail.com
Fri May 13 09:22:06 PDT 2016
Great, that seems to have fixed it.
Thanks a ton for your help!
d.
On Fri, May 13, 2016 at 11:02 AM, David Collins <dcollins4096 at gmail.com>
wrote:
> Sweet, thanks! I'll report back when its all done.
>
> d.
>
> On Fri, May 13, 2016 at 11:00 AM, Nathan Goldbaum <nathan12343 at gmail.com>
> wrote:
>
>> "conda uninstall yt", clone the yt repository, do "hg update yt", and
>> then do "python setup.py develop"
>>
>> On Fri, May 13, 2016 at 9:58 AM, David Collins <dcollins4096 at gmail.com>
>> wrote:
>>
>>> I can do both of those things.
>>>
>>> What's the easiest way to update to that branch if I used the anaconda
>>> installer?
>>>
>>> On Fri, May 13, 2016 at 10:53 AM, Nathan Goldbaum <nathan12343 at gmail.com
>>> > wrote:
>>>
>>>> Any chance you can try with 3.3dev?
>>>>
>>>> If that fails, any chance you can share the dataset so we can debug?
>>>>
>>>> On Fri, May 13, 2016 at 9:51 AM, David Collins <dcollins4096 at gmail.com>
>>>> wrote:
>>>>
>>>>>
>>>>> Hi, Everybody!
>>>>>
>>>>> I have an odd error, I was wondering if this is pebkac or a yt
>>>>> glitch. If I try to do a projection, first it complains about
>>>>> 'creation_time' not existing, then on a subsequent call, it complains about
>>>>> 'path_element_z' not existing. The only difference between this run and
>>>>> other similar Enzo runs that do work is this one has a handful of active
>>>>> particles. Is there something else I need to do to get those to work? I'm
>>>>> running yt 3.2.3.
>>>>>
>>>>> Thanks!
>>>>> d.
>>>>>
>>>>> >>> ds = yt.load(path)
>>>>> >>> proj = yt.ProjectionPlot(ds,ax,field)
>>>>> Traceback (most recent call last):
>>>>> File "<stdin>", line 1, in <module>
>>>>> File "p33_harry_plotter.py", line 40, in <module>
>>>>> proj = yt.ProjectionPlot(ds,ax,field)
>>>>> #,weight_field=weight_fields.get(field,None),method=methods.get(field,'integrate'))
>>>>> File
>>>>> "/u/sciteam/dcollins/local-yt-2016-04-12-nathan/src/yt-conda/lib/python2.7/site-packages/yt/visualization/plot_window.py",
>>>>> line 1437, in __init__
>>>>> field_parameters = field_parameters, method = method)
>>>>> File
>>>>> "/u/sciteam/dcollins/local-yt-2016-04-12-nathan/src/yt-conda/lib/python2.7/site-packages/yt/data_objects/construction_data_containers.py",
>>>>> line 255, in __init__
>>>>> field = self._determine_fields(ensure_list(field))
>>>>> File
>>>>> "/u/sciteam/dcollins/local-yt-2016-04-12-nathan/src/yt-conda/lib/python2.7/site-packages/yt/data_objects/data_containers.py",
>>>>> line 518, in _determine_fields
>>>>> finfo = self.ds._get_field_info("unknown", fname)
>>>>> File
>>>>> "/u/sciteam/dcollins/local-yt-2016-04-12-nathan/src/yt-conda/lib/python2.7/site-packages/yt/data_objects/static_output.py",
>>>>> line 505, in _get_field_info
>>>>> self.index
>>>>> File
>>>>> "/u/sciteam/dcollins/local-yt-2016-04-12-nathan/src/yt-conda/lib/python2.7/site-packages/yt/data_objects/static_output.py",
>>>>> line 326, in index
>>>>> self.create_field_info()
>>>>> File
>>>>> "/u/sciteam/dcollins/local-yt-2016-04-12-nathan/src/yt-conda/lib/python2.7/site-packages/yt/data_objects/static_output.py",
>>>>> line 377, in create_field_info
>>>>> self.add_particle_union(pu)
>>>>> File
>>>>> "/u/sciteam/dcollins/local-yt-2016-04-12-nathan/src/yt-conda/lib/python2.7/site-packages/yt/data_objects/static_output.py",
>>>>> line 435, in add_particle_union
>>>>> funits = self._get_field_info(s, field).units
>>>>> File
>>>>> "/u/sciteam/dcollins/local-yt-2016-04-12-nathan/src/yt-conda/lib/python2.7/site-packages/yt/data_objects/static_output.py",
>>>>> line 543, in _get_field_info
>>>>> raise YTFieldNotFound((ftype, fname), self)
>>>>> yt.utilities.exceptions.YTFieldNotFound: Could not find field '('io',
>>>>> 'creation_time')' in DD0010.
>>>>>
>>>>> >>> proj = yt.ProjectionPlot(ds,ax,field)
>>>>>
>>>>> Traceback (most recent call last):
>>>>> File "<stdin>", line 1, in <module>
>>>>> File "p33_harry_plotter.py", line 40, in <module>
>>>>> proj = yt.ProjectionPlot(ds,ax,field)
>>>>> #,weight_field=weight_fields.get(field,None),method=methods.get(field,'integrate'))
>>>>> File
>>>>> "/u/sciteam/dcollins/local-yt-2016-04-12-nathan/src/yt-conda/lib/python2.7/site-packages/yt/visualization/plot_window.py",
>>>>> line 1437, in __init__
>>>>> field_parameters = field_parameters, method = method)
>>>>> File
>>>>> "/u/sciteam/dcollins/local-yt-2016-04-12-nathan/src/yt-conda/lib/python2.7/site-packages/yt/data_objects/construction_data_containers.py",
>>>>> line 258, in __init__
>>>>> self.get_data(field)
>>>>> File
>>>>> "/u/sciteam/dcollins/local-yt-2016-04-12-nathan/src/yt-conda/lib/python2.7/site-packages/yt/data_objects/construction_data_containers.py",
>>>>> line 332, in get_data
>>>>> self._handle_chunk(chunk, fields, tree)
>>>>> File
>>>>> "/u/sciteam/dcollins/local-yt-2016-04-12-nathan/src/yt-conda/lib/python2.7/site-packages/yt/data_objects/construction_data_containers.py",
>>>>> line 424, in _handle_chunk
>>>>> dl = chunk["index", "path_element_%s" % (ax_name)]
>>>>> File
>>>>> "/u/sciteam/dcollins/local-yt-2016-04-12-nathan/src/yt-conda/lib/python2.7/site-packages/yt/data_objects/data_containers.py",
>>>>> line 253, in __getitem__
>>>>> self.get_data(f)
>>>>> File
>>>>> "/u/sciteam/dcollins/local-yt-2016-04-12-nathan/src/yt-conda/lib/python2.7/site-packages/yt/data_objects/data_containers.py",
>>>>> line 702, in get_data
>>>>> fluids, self, self._current_chunk)
>>>>> File
>>>>> "/u/sciteam/dcollins/local-yt-2016-04-12-nathan/src/yt-conda/lib/python2.7/site-packages/yt/geometry/geometry_handler.py",
>>>>> line 239, in _read_fluid_fields
>>>>> fields_to_read, fields_to_generate = self._split_fields(fields)
>>>>> File
>>>>> "/u/sciteam/dcollins/local-yt-2016-04-12-nathan/src/yt-conda/lib/python2.7/site-packages/yt/geometry/geometry_handler.py",
>>>>> line 220, in _split_fields
>>>>> raise YTFieldNotFound((ftype,fname), self.ds)
>>>>> yt.utilities.exceptions.YTFieldNotFound: Could not find field
>>>>> '('index', 'path_element_z')' in DD0010.
>>>>>
>>>>> --
>>>>> -- Sent from a computer.
>>>>>
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>>>>>
>>>>>
>>>>
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>
>
> --
> -- Sent from a computer.
>
--
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