[yt-users] Camera/Off Axis Options

Sushilkumar sushil.sush19us at gmail.com
Mon May 9 17:39:18 PDT 2016 

Dear Suoqing Ji:

Thank you. Can I use the same script for my 2d streamline plots?

I used plt.streamplot(X[::factor, ::factor], Y[::factor, ::factor],
U[::factor, ::factor], V[::factor, ::factor],norm='True') but the issue
still persist with normalization (script yt_frb_offaxis.py and plot
L(1,0,0) N(0,1,1).png).

Without the off axis slice the streamline plot looks proper
(UniformGridData_Slice_y_field_x_t000.png)

Thanks in advance

https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc

On Mon, May 9, 2016 at 7:38 PM, Sushilkumar <sushil.sush19us at gmail.com>
wrote:

> Dear Suoqing Ji:
>
> Thank you. Can I use the same script for my 2d streamline plots?
>
> I used plt.streamplot(X[::factor, ::factor], Y[::factor, ::factor],
> U[::factor, ::factor], V[::factor, ::factor],norm='True') but the issue
> still persist with normalization (script yt_frb_offaxis.py and plot
> L(1,0,0) N(0,1,1).png).
>
> Without the off axis slice the streamline plot looks proper
> (UniformGridData_Slice_y_field_x_t000.png)
>
> Thanks in advance
>
> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc
>
>
>
>
> On Mon, May 9, 2016 at 12:59 PM, <yt-users-request at lists.spacepope.org>
> wrote:
>
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>>    1. Re: Camera/Off Axis Options (Suoqing Ji)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Mon, 9 May 2016 10:59:38 -0700
>> From: Suoqing Ji <suoqing at physics.ucsb.edu>
>> To: Discussion of the yt analysis package
>>         <yt-users at lists.spacepope.org>
>> Subject: Re: [yt-users] Camera/Off Axis Options
>> Message-ID: <4CE58756-CEBD-42D3-B2D7-8C91D6E36B28 at physics.ucsb.edu>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Hi Sushil,
>>
>> I think this is normal ? the empty cells suggest the area plotted is out
>> of your simulation domain. You could zoom in to avoid the empty cell being
>> plotted.
>>
>> Best wishes,
>> --
>> Suoqing JI
>> Ph.D Candidate
>> Department of Physics
>> University of California, Santa Barbara
>> http://web.physics.ucsb.edu/~suoqing
>>
>> > On May 9, 2016, at 9:23 AM, Sushilkumar <sushil.sush19us at gmail.com>
>> wrote:
>> >
>> > Dear Suoqing Ji:
>> >
>> > I was able to include the off axis using frb options (script
>> yt_frb_offaxis.py on drive link)
>> >
>> > But it gives me a plot with its edges chopped. For example L(1,0,0)
>> N(0,1,1).png and L(1,0,1) N(0,1,1).png have empty cells on the edges. I
>> should not have empty cells as all of the cells are filled like L(1,0,0)
>> N(0,0,1).png. Since only the viewing angle is changed it should still fill
>> all the cells.
>> >
>> > I tried it for different angles as well but there are always some empty
>> cells present for every off axis slices.
>> >
>> > Can you suggest wherein these edges are not empty and have quiver
>> vectors?
>> >
>> > Thanks in advance.
>> >
>> >
>> > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>
>> >
>> >
>> >
>> >
>> > On Thu, May 5, 2016 at 8:22 PM, <yt-users-request at lists.spacepope.org
>> <mailto:yt-users-request at lists.spacepope.org>> wrote:
>> > Send yt-users mailing list submissions to
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>> > Today's Topics:
>> >
>> >    1. Re: Camera/Off Axis Options (Suoqing Ji)
>> >
>> >
>> > ----------------------------------------------------------------------
>> >
>> > Message: 1
>> > Date: Thu, 5 May 2016 18:19:51 -0700
>> > From: Suoqing Ji <suoqing at physics.ucsb.edu <mailto:
>> suoqing at physics.ucsb.edu>>
>> > To: Discussion of the yt analysis package
>> >         <yt-users at lists.spacepope.org <mailto:
>> yt-users at lists.spacepope.org>>
>> > Subject: Re: [yt-users] Camera/Off Axis Options
>> > Message-ID: <CF41248A-0BEA-4CF7-A2FE-DA7ECA15B0AE at physics.ucsb.edu
>> <mailto:CF41248A-0BEA-4CF7-A2FE-DA7ECA15B0AE at physics.ucsb.edu>>
>> > Content-Type: text/plain; charset="utf-8"
>> >
>> > Great! You could switch to linear or symlog normalization for
>> non-positive values.
>> >
>> > Best wishes,
>> > --
>> > Suoqing JI
>> > Ph.D Candidate
>> > Department of Physics
>> > University of California, Santa Barbara
>> > http://web.physics.ucsb.edu/~suoqing <
>> http://web.physics.ucsb.edu/~suoqing>
>> >
>> > > On May 5, 2016, at 6:02 PM, Sushilkumar <sushil.sush19us at gmail.com
>> <mailto:sushil.sush19us at gmail.com>> wrote:
>> > >
>> > > Dear Suoqing Ji:
>> > >
>> > > Think I was able to overcome the previous error and currently running
>> without any errors (however a few warnings do show up).
>> > >
>> > > I would have to test a few cases before I can confirm on the same.
>> > >
>> > > Thanks in advance.
>> > >
>> > >
>> > >
>> > >
>> > >
>> > > On Thu, May 5, 2016 at 7:44 PM, <yt-users-request at lists.spacepope.org
>> <mailto:yt-users-request at lists.spacepope.org> <mailto:
>> yt-users-request at lists.spacepope.org <mailto:
>> yt-users-request at lists.spacepope.org>>> wrote:
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>> > >
>> > > You can reach the person managing the list at
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>> > >
>> > > When replying, please edit your Subject line so it is more specific
>> > > than "Re: Contents of yt-users digest..."
>> > >
>> > >
>> > > Today's Topics:
>> > >
>> > >    1. Camera/Off Axis Options (Sushilkumar)
>> > >
>> > >
>> > > ----------------------------------------------------------------------
>> > >
>> > > Message: 1
>> > > Date: Thu, 5 May 2016 19:44:22 -0500
>> > > From: Sushilkumar <sushil.sush19us at gmail.com <mailto:
>> sushil.sush19us at gmail.com> <mailto:sushil.sush19us at gmail.com <mailto:
>> sushil.sush19us at gmail.com>>>
>> > > To: Discussion of the yt analysis package
>> > >         <yt-users at lists.spacepope.org <mailto:
>> yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org
>> <mailto:yt-users at lists.spacepope.org>>>
>> > > Subject: [yt-users] Camera/Off Axis Options
>> > > Message-ID:
>> > >         <CAKARaKUGCFF1L2x+AcsinaA1M2dEksTO=
>> 0_WuVjJaporyGc6sg at mail.gmail.com <mailto:0_WuVjJaporyGc6sg at mail.gmail.com>
>> <mailto:0_WuVjJaporyGc6sg at mail.gmail.com <mailto:
>> 0_WuVjJaporyGc6sg at mail.gmail.com>>>
>> > > Content-Type: text/plain; charset="utf-8"
>> > >
>> > > Dear Suoqing Ji:
>> > >
>> > > For the frb off axis I get the below error. The script
>> (yt_frb_offaxis.py)
>> > > for your reference is available on the drive link.
>> > >
>> > > Thanks in advance
>> > >
>> > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>
>> > >
>> > >
>> > >
>> > > Error:
>> > >
>> > > Traceback (most recent call last):
>> > >   File "yt_frb_offaxis.py", line 63, in <module>
>> > >     plt.colorbar()
>> > >   File
>> > >
>> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/pyplot.py",
>> > > line 2237, in colorbar
>> > >     ret = gcf().colorbar(mappable, cax = cax, ax=ax, **kw)
>> > >   File
>> > >
>> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/figure.py",
>> > > line 1569, in colorbar
>> > >     cb = cbar.colorbar_factory(cax, mappable, **kw)
>> > >   File
>> > >
>> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py",
>> > > line 1330, in colorbar_factory
>> > >     cb = Colorbar(cax, mappable, **kwargs)
>> > >   File
>> > >
>> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py",
>> > > line 905, in __init__
>> > >     ColorbarBase.__init__(self, ax, **kw)
>> > >   File
>> > >
>> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py",
>> > > line 323, in __init__
>> > >     self.draw_all()
>> > >   File
>> > >
>> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py",
>> > > line 348, in draw_all
>> > >     self._config_axes(X, Y)
>> > >   File
>> > >
>> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py",
>> > > line 444, in _config_axes
>> > >     self.update_ticks()
>> > >   File
>> > >
>> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py",
>> > > line 373, in update_ticks
>> > >     ticks, ticklabels, offset_string = self._ticker()
>> > >   File
>> > >
>> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/colorbar.py",
>> > > line 594, in _ticker
>> > >     b = np.array(locator())
>> > >   File
>> > >
>> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/ticker.py",
>> > > line 1535, in __call__
>> > >     return self.tick_values(vmin, vmax)
>> > >   File
>> > >
>> "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/ticker.py",
>> > > line 1553, in tick_values
>> > >     "Data has no positive values, and therefore can not be "
>> > > ValueError: Data has no positive values, and therefore can not be
>> > > log-scaled.
>> > >
>> > >
>> > > On Thu, May 5, 2016 at 3:09 PM, <yt-users-request at lists.spacepope.org
>> <mailto:yt-users-request at lists.spacepope.org> <mailto:
>> yt-users-request at lists.spacepope.org <mailto:
>> yt-users-request at lists.spacepope.org>>>
>> > > wrote:
>> > >
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>> > > >
>> > > > When replying, please edit your Subject line so it is more specific
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>> > > >
>> > > > Today's Topics:
>> > > >
>> > > >    1. Re: Camera/Off Axis Options (Suoqing Ji)
>> > > >
>> > > >
>> > > >
>> ----------------------------------------------------------------------
>> > > >
>> > > > Message: 1
>> > > > Date: Thu, 5 May 2016 13:09:35 -0700
>> > > > From: Suoqing Ji <suoqing at physics.ucsb.edu <mailto:
>> suoqing at physics.ucsb.edu> <mailto:suoqing at physics.ucsb.edu <mailto:
>> suoqing at physics.ucsb.edu>>>
>> > > > To: Discussion of the yt analysis package
>> > > >         <yt-users at lists.spacepope.org <mailto:
>> yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org
>> <mailto:yt-users at lists.spacepope.org>>>
>> > > > Subject: Re: [yt-users] Camera/Off Axis Options
>> > > > Message-ID: <CFD3270F-3DD0-42FB-A13C-7AF897B410DA at physics.ucsb.edu
>> <mailto:CFD3270F-3DD0-42FB-A13C-7AF897B410DA at physics.ucsb.edu> <mailto:
>> CFD3270F-3DD0-42FB-A13C-7AF897B410DA at physics.ucsb.edu <mailto:
>> CFD3270F-3DD0-42FB-A13C-7AF897B410DA at physics.ucsb.edu>>>
>> > > > Content-Type: text/plain; charset="utf-8"
>> > > >
>> > > > Hi Sushil,
>> > > >
>> > > > It?s a derived field and will be automatically computed by yt based
>> on
>> > > > three components of velocity field. You could replace it to any
>> other
>> > > > fields you want.
>> > > >
>> > > > Best wishes,
>> > > > --
>> > > > Suoqing JI
>> > > > Ph.D Candidate
>> > > > Department of Physics
>> > > > University of California, Santa Barbara
>> > > > http://web.physics.ucsb.edu/~suoqing <
>> http://web.physics.ucsb.edu/~suoqing> <
>> http://web.physics.ucsb.edu/~suoqing <
>> http://web.physics.ucsb.edu/~suoqing>>
>> > > >
>> > > > > On May 5, 2016, at 1:07 PM, Sushilkumar <
>> sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com> <mailto:
>> sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>>>
>> > > > wrote:
>> > > > >
>> > > > > Dear Suoqing Ji:
>> > > > >
>> > > > > In your draft script what field does 'velocity_magnitude' refer
>> to? I do
>> > > > not have a field that correspond to magnitude.
>> > > > >
>> > > > > On Mon, May 2, 2016 at 6:19 PM, <
>> yt-users-request at lists.spacepope.org <mailto:
>> yt-users-request at lists.spacepope.org> <mailto:
>> yt-users-request at lists.spacepope.org <mailto:
>> yt-users-request at lists.spacepope.org>>
>> > > > <mailto:yt-users-request at lists.spacepope.org <mailto:
>> yt-users-request at lists.spacepope.org> <mailto:
>> yt-users-request at lists.spacepope.org <mailto:
>> yt-users-request at lists.spacepope.org>>>> wrote:
>> > > > > Send yt-users mailing list submissions to
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>> > > > > Today's Topics:
>> > > > >
>> > > > >    1. Re: Camera/Off Axis Options (Suoqing Ji)
>> > > > >    2. Re: load structured mesh (Andrea Negri)
>> > > > >
>> > > > >
>> > > > >
>> ----------------------------------------------------------------------
>> > > > >
>> > > > > Message: 1
>> > > > > Date: Mon, 2 May 2016 13:42:32 -0700
>> > > > > From: Suoqing Ji <suoqing at physics.ucsb.edu <mailto:
>> suoqing at physics.ucsb.edu> <mailto:suoqing at physics.ucsb.edu <mailto:
>> suoqing at physics.ucsb.edu>> <mailto:
>> > > > suoqing at physics.ucsb.edu <mailto:suoqing at physics.ucsb.edu> <mailto:
>> suoqing at physics.ucsb.edu <mailto:suoqing at physics.ucsb.edu>>>>
>> > > > > To: Discussion of the yt analysis package
>> > > > >         <yt-users at lists.spacepope.org <mailto:
>> yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org
>> <mailto:yt-users at lists.spacepope.org>> <mailto:
>> > > > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org
>> >>>>
>> > > > > Subject: Re: [yt-users] Camera/Off Axis Options
>> > > > > Message-ID: <
>> 820FD28B-2CB2-4131-AD64-0A07990F5055 at physics.ucsb.edu <mailto:
>> 820FD28B-2CB2-4131-AD64-0A07990F5055 at physics.ucsb.edu> <mailto:
>> 820FD28B-2CB2-4131-AD64-0A07990F5055 at physics.ucsb.edu <mailto:
>> 820FD28B-2CB2-4131-AD64-0A07990F5055 at physics.ucsb.edu>>
>> > > > <mailto:820FD28B-2CB2-4131-AD64-0A07990F5055 at physics.ucsb.edu
>> <mailto:820FD28B-2CB2-4131-AD64-0A07990F5055 at physics.ucsb.edu> <mailto:
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>> 820FD28B-2CB2-4131-AD64-0A07990F5055 at physics.ucsb.edu>>>>
>> > > > > Content-Type: text/plain; charset="utf-8"
>> > > > >
>> > > > > Hi Sushil,
>> > > > >
>> > > > > What you can do currently is to get the data from fixed resolution
>> > > > buffer and make the plot with quiver callback in matplotlib. The
>> following
>> > > > is a basic draft for this:
>> > > > >
>> > > > > L = [1, -1, 0]
>> > > > > north_vector = [0, 0, 1]
>> > > > > slc = yt.OffAxisSlicePlot(ds, L, 'cutting_plane_velocity_x',
>> > > > center=[0,0,0], width=(180,'km'), north_vector=north_vector)
>> > > > >
>> > > > > # Now get the fixed resolution buffer
>> > > > > vel = slc._frb['velocity_magnitude?]
>> > > > > U = slc._frb['cutting_plane_velocity_x']
>> > > > > V = slc._frb['cutting_plane_velocity_y']
>> > > > >
>> > > > > extentx = [slc.xlim[i].in_units('km') for i in (0, 1)]
>> > > > > extenty = [slc.ylim[i].in_units('km') for i in (0, 1)]
>> > > > > extent = extentx + extenty
>> > > > >
>> > > > > x = np.linspace(extentx[0], extentx[1], vel.shape[0])
>> > > > > y = np.linspace(extenty[1], extenty[0], vel.shape[1])
>> > > > >
>> > > > > X, Y = np.meshgrid(x, y)
>> > > > >
>> > > > > normalize = True
>> > > > > if normalize is True:
>> > > > >         N = np.sqrt(U**2+V**2)
>> > > > >         U /= N
>> > > > >         V /= N
>> > > > >
>> > > > > norm = matplotlib.colors.LogNorm(vmin=vel.min(), vmax=vel.max())
>> > > > > factor = 40
>> > > > >
>> > > > > plt.quiver(X[::factor, ::factor], Y[::factor, ::factor],
>> U[::factor,
>> > > > ::factor], V[::factor, ::factor])
>> > > > > plt.imshow(vel.d, extent=extent, norm=norm)
>> > > > > plt.colorbar()
>> > > > > plt.savefig('quiver_plot.png')
>> > > > >
>> > > > > Best wishes,
>> > > > > --
>> > > > > Suoqing JI
>> > > > > Ph.D Candidate
>> > > > > Department of Physics
>> > > > > University of California, Santa Barbara
>> > > > > http://web.physics.ucsb.edu/~suoqing <
>> http://web.physics.ucsb.edu/~suoqing> <
>> http://web.physics.ucsb.edu/~suoqing <
>> http://web.physics.ucsb.edu/~suoqing>> <
>> > > > http://web.physics.ucsb.edu/~suoqing <
>> http://web.physics.ucsb.edu/~suoqing> <
>> http://web.physics.ucsb.edu/~suoqing <
>> http://web.physics.ucsb.edu/~suoqing>>>
>> > > > >
>> > > > > > On Apr 30, 2016, at 4:04 PM, Sushilkumar <
>> sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com> <mailto:
>> sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>>
>> > > > <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>
>> <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>>>>
>> wrote:
>> > > > > >
>> > > > > > Dear Suoqing Ji:
>> > > > > >
>> > > > > > Thanks. In the meanwhile can you suggest any alternate
>> function/method
>> > > > in yt that  I can use for my vector plots?
>> > > > > >
>> > > > > > I also have a 3d (streamlines_t000.png) and 2d streamline plot
>> > > > (UniformGridData_Slice_y_field_x_t000.png), which needs to treated
>> in the
>> > > > same way. Can you suggest any approach for these plots?
>> > > > > >
>> > > > > > Drive link:
>> > > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> <
>> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>> <
>> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> <
>> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>>>
>> > > > > >
>> > > > > >
>> > > > > > Thanks in advance
>> > > > > >
>> > > > > >
>> > > > > >
>> > > > > > On Sat, Apr 30, 2016 at 12:56 PM, <
>> > > > yt-users-request at lists.spacepope.org <mailto:
>> yt-users-request at lists.spacepope.org> <mailto:
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>> yt-users-owner at lists.spacepope.org>>> <mailto:
>> > > > yt-users-owner at lists.spacepope.org <mailto:
>> yt-users-owner at lists.spacepope.org> <mailto:
>> yt-users-owner at lists.spacepope.org <mailto:
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>> yt-users-owner at lists.spacepope.org>>>>
>> > > > > >
>> > > > > > When replying, please edit your Subject line so it is more
>> specific
>> > > > > > than "Re: Contents of yt-users digest..."
>> > > > > >
>> > > > > >
>> > > > > > Today's Topics:
>> > > > > >
>> > > > > >    1. Re: Camera/Off Axis Options (Suoqing Ji)
>> > > > > >
>> > > > > >
>> > > > > >
>> ----------------------------------------------------------------------
>> > > > > >
>> > > > > > Message: 1
>> > > > > > Date: Fri, 29 Apr 2016 12:35:04 -0700
>> > > > > > From: Suoqing Ji <suoqing at physics.ucsb.edu <mailto:
>> suoqing at physics.ucsb.edu> <mailto:suoqing at physics.ucsb.edu <mailto:
>> suoqing at physics.ucsb.edu>> <mailto:
>> > > > suoqing at physics.ucsb.edu <mailto:suoqing at physics.ucsb.edu> <mailto:
>> suoqing at physics.ucsb.edu <mailto:suoqing at physics.ucsb.edu>>> <mailto:
>> suoqing at physics.ucsb.edu <mailto:suoqing at physics.ucsb.edu> <mailto:
>> suoqing at physics.ucsb.edu <mailto:suoqing at physics.ucsb.edu>> <mailto:
>> > > > suoqing at physics.ucsb.edu <mailto:suoqing at physics.ucsb.edu> <mailto:
>> suoqing at physics.ucsb.edu <mailto:suoqing at physics.ucsb.edu>>>>>
>> > > > > > To: Discussion of the yt analysis package
>> > > > > >         <yt-users at lists.spacepope.org <mailto:
>> yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org
>> <mailto:yt-users at lists.spacepope.org>> <mailto:
>> > > > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org
>> >>
>> > > > <mailto:yt-users at lists.spacepope.org <mailto:
>> yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org
>> <mailto:yt-users at lists.spacepope.org>>>>>
>> > > > > > Subject: Re: [yt-users] Camera/Off Axis Options
>> > > > > > Message-ID: <
>> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78 at physics.ucsb.edu <mailto:
>> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78 at physics.ucsb.edu> <mailto:
>> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78 at physics.ucsb.edu <mailto:
>> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78 at physics.ucsb.edu>>
>> > > > <mailto:9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78 at physics.ucsb.edu
>> <mailto:9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78 at physics.ucsb.edu> <mailto:
>> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78 at physics.ucsb.edu <mailto:
>> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78 at physics.ucsb.edu>>> <mailto:
>> > > > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78 at physics.ucsb.edu <mailto:
>> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78 at physics.ucsb.edu> <mailto:
>> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78 at physics.ucsb.edu <mailto:
>> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78 at physics.ucsb.edu>> <mailto:
>> > > > 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78 at physics.ucsb.edu <mailto:
>> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78 at physics.ucsb.edu> <mailto:
>> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78 at physics.ucsb.edu <mailto:
>> 9D6F4AE6-F3EF-4A4B-A997-32ACA9688E78 at physics.ucsb.edu>>>>>
>> > > > > > Content-Type: text/plain; charset="us-ascii"
>> > > > > >
>> > > > > > Hi Sushil,
>> > > > > >
>> > > > > > I was able to reproduce your error and created an issue here:
>> > > >
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot>
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> >>
>> > > > <
>> > > >
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot>
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> >>>
>> > > > <
>> > > >
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot>
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> >>
>> > > > <
>> > > >
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot>
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> >>>>
>> > > > <
>> > > >
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot>
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> >>
>> > > > <
>> > > >
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot>
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> >>>
>> > > > <
>> > > >
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot>
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> >>
>> > > > <
>> > > >
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot>
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> <
>> https://bitbucket.org/yt_analysis/yt/issues/1214/vector-annotation-of-off-axis-plot
>> >>
>> > > > >>>
>> > > > > >
>> > > > > > Best wishes,
>> > > > > > --
>> > > > > > Suoqing JI
>> > > > > > Ph.D Candidate
>> > > > > > Department of Physics
>> > > > > > University of California, Santa Barbara
>> > > > > > http://web.physics.ucsb.edu/~suoqing <
>> http://web.physics.ucsb.edu/~suoqing> <
>> http://web.physics.ucsb.edu/~suoqing <
>> http://web.physics.ucsb.edu/~suoqing>> <
>> > > > http://web.physics.ucsb.edu/~suoqing <
>> http://web.physics.ucsb.edu/~suoqing> <
>> http://web.physics.ucsb.edu/~suoqing <
>> http://web.physics.ucsb.edu/~suoqing>>> <
>> > > > http://web.physics.ucsb.edu/~suoqing <
>> http://web.physics.ucsb.edu/~suoqing> <
>> http://web.physics.ucsb.edu/~suoqing <
>> http://web.physics.ucsb.edu/~suoqing>> <
>> http://web.physics.ucsb.edu/~suoqing <
>> http://web.physics.ucsb.edu/~suoqing> <
>> http://web.physics.ucsb.edu/~suoqing <
>> http://web.physics.ucsb.edu/~suoqing>>
>> > > > >>
>> > > > > >
>> > > > > > > On Apr 28, 2016, at 7:17 PM, Sushilkumar <
>> sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com> <mailto:
>> sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>>
>> > > > <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>
>> <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>>>
>> <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>
>> <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>>
>> > > > <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>
>> <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>>>>>
>> wrote:
>> > > > > > >
>> > > > > > > Dear Suoqing Ji:
>> > > > > > >
>> > > > > > > With a combination of center [0,0,0] and adjusting the width
>> w, I
>> > > > was able to eliminate all the warnings mentioned earlier. But the
>> off axis
>> > > > slice plots still wont give me a desired result.
>> > > > > > >
>> > > > > > > Plot available on the drive below below.
>> > > > > > >
>> > > > > > > The two plots L(010),N(0,0,1).png and L(101),N(001).png are
>> plotted
>> > > > for x-z plane and viewing angle of 45 degrees but both are
>> drastically
>> > > > different from each other. In fact the off axis slice plots
>> > > > (L(101),N(001).png) is not in the x-z plane either.
>> > > > > > >
>> > > > > > > I am aiming for a plot similar to vector_rotate.png which is
>> same as
>> > > > vector_original.png but rotated/viewed at an angle.
>> > > > > > >
>> > > > > > > The vector_rotate.png was created using the python image
>> library. I
>> > > > was hoping if yt has any similar options with off axis which would
>> tilt the
>> > > > vector plots and fill all the vector grids (which cannot be done
>> using PIL).
>> > > > > > >
>> > > > > > > The script (yt_velocity_fields.py) and sample data file
>> > > > (Expl_Bt101.mtx.tar.gz) is available on drive link for your
>> reference.
>> > > > > > >
>> > > > > > > Thanks in advance and my sincere apologies for repeated
>> queries. But
>> > > > this is extremely critical in reproducing my result and putting it
>> for
>> > > > publication.
>> > > > > > >
>> > > > > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc
>> <https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> <
>> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>> <
>> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> <
>> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>>> <
>> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> <
>> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>> <
>> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> <
>> > > > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <
>> https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>>>>
>> > > > > > >
>> > > > > > >
>> > > > > > >
>> > > > > > >
>> > > > > > >
>> > > > > >
>> > > > > > -------------- next part --------------
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>> >>
>> > > > >>>
>> > > > > >
>> > > > > > ------------------------------
>> > > > > >
>> > > > > > Subject: Digest Footer
>> > > > > >
>> > > > > > _______________________________________________
>> > > > > > yt-users mailing list
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>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org
>> >>>
>> > > > <mailto:yt-users at lists.spacepope.org <mailto:
>> yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org
>> <mailto:yt-users at lists.spacepope.org>> <mailto:
>> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
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>> > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
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>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>> <
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>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <
>> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>>
>> > > > > >
>> > > > > >
>> > > > > > ------------------------------
>> > > > > >
>> > > > > > End of yt-users Digest, Vol 98, Issue 43
>> > > > > > ****************************************
>> > > > > >
>> > > > > >
>> > > > > >
>> > > > > > --
>> > > > > > SK2
>> > > > > >
>> > > > > > "Claiming that something can move faster than light is a good
>> > > > conversation-stopper in physics. People edge away from you in
>> cocktail
>> > > > parties; friends never return phone calls. You just don?t mess with
>> Albert
>> > > > Einstein."
>> > > > > >
>> > > > > > _______________________________________________
>> > > > > > yt-users mailing list
>> > > > > > yt-users at lists.spacepope.org <mailto:
>> yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org
>> <mailto:yt-users at lists.spacepope.org>> <mailto:
>> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org
>> >>>
>> > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <
>> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
>> > > > >
>> > > > > -------------- next part --------------
>> > > > > An HTML attachment was scrubbed...
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>> <
>> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160502/953460d9/attachment-0001.htm>
>> <
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>> <
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>> >>
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>> > > >
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>> <
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>> <
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>> >>
>> > > > >>
>> > > > >
>> > > > > ------------------------------
>> > > > >
>> > > > > Message: 2
>> > > > > Date: Tue, 3 May 2016 01:18:38 +0200
>> > > > > From: Andrea Negri <negri.andre at gmail.com <mailto:
>> negri.andre at gmail.com> <mailto:negri.andre at gmail.com <mailto:
>> negri.andre at gmail.com>> <mailto:negri.andre at gmail.com <mailto:
>> negri.andre at gmail.com> <mailto:negri.andre at gmail.com <mailto:
>> negri.andre at gmail.com>>
>> > > > >>
>> > > > > To: Discussion of the yt analysis package
>> > > > >         <yt-users at lists.spacepope.org <mailto:
>> yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org
>> <mailto:yt-users at lists.spacepope.org>> <mailto:
>> > > > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org
>> >>>>
>> > > > > Subject: Re: [yt-users] load structured mesh
>> > > > > Message-ID:
>> > > > >         <
>> > > > CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w at mail.gmail.com
>> <mailto:
>> CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w at mail.gmail.com>
>> <mailto:
>> CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w at mail.gmail.com
>> <mailto:
>> CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w at mail.gmail.com>>
>> > > > <mailto:
>> CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w at mail.gmail.com
>> <mailto:
>> CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w at mail.gmail.com>
>> <mailto:
>> CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w at mail.gmail.com
>> <mailto:
>> CAPUxaiR17QnvGze88Y61scioy20NwDx7Qfir2-cUqEwFZeOB7w at mail.gmail.com>>
>> > > > >>
>> > > > > Content-Type: text/plain; charset=UTF-8
>> > > > >
>> > > > > Dear John,
>> > > > >
>> > > > > thanks for the suggestions. Do you know if the grid data format is
>> > > > > compatible with a non uniform mesh? I was thinking of porting my
>> > > > > outputs in this format.
>> > > > >
>> > > > >
>> > > > > Cheers,
>> > > > > Andrea
>> > > > >
>> > > > > On 2 May 2016 at 18:52, John Zuhone <jzuhone at gmail.com <mailto:
>> jzuhone at gmail.com> <mailto:jzuhone at gmail.com <mailto:jzuhone at gmail.com>>
>> <mailto:
>> > > > jzuhone at gmail.com <mailto:jzuhone at gmail.com> <mailto:
>> jzuhone at gmail.com <mailto:jzuhone at gmail.com>>>> wrote:
>> > > > > > Hi Andrea,
>> > > > > >
>> > > > > > yt has some support for axisymmetric grids in 2D, so you won?t
>> need to
>> > > > convert to a 3D array.
>> > > > > >
>> > > > > > The bigger issue is the logarithmic grid spacing. This is
>> currently
>> > > > being worked on, but is in a very early state. Currently what it
>> does is
>> > > > use ?logr? as the coordinate instead of r, which may not be very
>> ideal for
>> > > > every situation. A lot of yt functionality is probably not
>> compatible with
>> > > > this way of doing things.
>> > > > > >
>> > > > > > Nevertheless, if you would like to explore it further, let us
>> know.
>> > > > > >
>> > > > > > Best,
>> > > > > >
>> > > > > > John Z
>> > > > > >
>> > > > > >> On May 2, 2016, at 10:53 AM, Andrea Negri <
>> negri.andre at gmail.com <mailto:negri.andre at gmail.com> <mailto:
>> negri.andre at gmail.com <mailto:negri.andre at gmail.com>>
>> > > > <mailto:negri.andre at gmail.com <mailto:negri.andre at gmail.com>
>> <mailto:negri.andre at gmail.com <mailto:negri.andre at gmail.com>>>> wrote:
>> > > > > >>
>> > > > > >> Of course. I have a 2.5D simulation in spherical coordinates.
>> It is
>> > > > > >> axial symmetric, so the actual grid is 2D, r and theta. The
>> grid is
>> > > > > >> structured, the grid spacing in theta is constant, while the
>> spacing
>> > > > > >> in r follows a geometrical progression, i.e. dr[i+1] = dr[i] *
>> factor,
>> > > > > >> where factor is a constant.
>> > > > > >>
>> > > > > >> I don't know if yt supports axisymmetric grids, but I can
>> bypass this
>> > > > > >> issue by duplicating the 2D array into a 3D one. Sure, it is
>> not
>> > > > > >> efficient...
>> > > > > >>
>> > > > > >> My ultimate goal is to produce projections, off axis
>> projections and
>> > > > > >> mock X-ray observations.
>> > > > > >>
>> > > > > >>
>> > > > > >> Thanks,
>> > > > > >> Andrea
>> > > > > >>
>> > > > > >> On 2 May 2016 at 16:43, Nathan Goldbaum <nathan12343 at gmail.com
>> <mailto:nathan12343 at gmail.com> <mailto:nathan12343 at gmail.com <mailto:
>> nathan12343 at gmail.com>>
>> > > > <mailto:nathan12343 at gmail.com <mailto:nathan12343 at gmail.com>
>> <mailto:nathan12343 at gmail.com <mailto:nathan12343 at gmail.com>>>> wrote:
>> > > > > >>> Can you share a little bit more detail about your grid
>> structure? I
>> > > > know
>> > > > > >>> that support for log-radial bins is being worked on right
>> now, for
>> > > > example.
>> > > > > >>>
>> > > > > >>> On Mon, May 2, 2016 at 3:18 AM, Andrea Negri <
>> negri.andre at gmail.com <mailto:negri.andre at gmail.com> <mailto:
>> negri.andre at gmail.com <mailto:negri.andre at gmail.com>>
>> > > > <mailto:negri.andre at gmail.com <mailto:negri.andre at gmail.com>
>> <mailto:negri.andre at gmail.com <mailto:negri.andre at gmail.com>>>> wrote:
>> > > > > >>>>
>> > > > > >>>> Hi all,
>> > > > > >>>>
>> > > > > >>>> I'm trying to read ZEUS-MP 2 data, and I'm building my
>> programs step
>> > > > > >>>> by step. I was able to load data regularly spaced in
>> spherical
>> > > > > >>>> coordinates. However, I actually have a non-uniform radial
>> grid.
>> > > > > >>>>
>> > > > > >>>> I tried with the script in attachment, but I have got odd
>> errors...
>> > > > > >>>>
>> > > > > >>>> Also, I have found this page, is it relevant for my case
>> (just
>> > > > because
>> > > > > >>>> my code is mentioned, the answer would be yes :) )?
>> > > > > >>>> https://bitbucket.org/yt_analysis/grid_data_format <
>> https://bitbucket.org/yt_analysis/grid_data_format> <
>> https://bitbucket.org/yt_analysis/grid_data_format <
>> https://bitbucket.org/yt_analysis/grid_data_format>> <
>> > > > https://bitbucket.org/yt_analysis/grid_data_format <
>> https://bitbucket.org/yt_analysis/grid_data_format> <
>> https://bitbucket.org/yt_analysis/grid_data_format <
>> https://bitbucket.org/yt_analysis/grid_data_format>>>
>> > > > > >>>>
>> > > > > >>>>
>> > > > > >>>> Thanks,
>> > > > > >>>> Andrea
>> > > > > >>>>
>> > > > > >>>> _______________________________________________
>> > > > > >>>> yt-users mailing list
>> > > > > >>>> yt-users at lists.spacepope.org <mailto:
>> yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org
>> <mailto:yt-users at lists.spacepope.org>> <mailto:
>> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org
>> >>>
>> > > > > >>>>
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <
>> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
>> > > > > >>>>
>> > > > > >>>
>> > > > > >>>
>> > > > > >>> _______________________________________________
>> > > > > >>> yt-users mailing list
>> > > > > >>> yt-users at lists.spacepope.org <mailto:
>> yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org
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>> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org
>> >>>
>> > > > > >>>
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <
>> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
>> > > > > >>>
>> > > > > >> _______________________________________________
>> > > > > >> yt-users mailing list
>> > > > > >> yt-users at lists.spacepope.org <mailto:
>> yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org
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>> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org
>> >>>
>> > > > > >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <
>> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <
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>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
>> > > > > >
>> > > > > > _______________________________________________
>> > > > > > yt-users mailing list
>> > > > > > yt-users at lists.spacepope.org <mailto:
>> yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org
>> <mailto:yt-users at lists.spacepope.org>> <mailto:
>> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org
>> >>>
>> > > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <
>> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
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>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
>> > > > >
>> > > > >
>> > > > > ------------------------------
>> > > > >
>> > > > > Subject: Digest Footer
>> > > > >
>> > > > > _______________________________________________
>> > > > > yt-users mailing list
>> > > > > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>
>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org
>> >>>
>> > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <
>> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
>> > > > >
>> > > > >
>> > > > > ------------------------------
>> > > > >
>> > > > > End of yt-users Digest, Vol 99, Issue 3
>> > > > > ***************************************
>> > > > >
>> > > > >
>> > > > >
>> > > > > --
>> > > > > SK2
>> > > > >
>> > > > > "Claiming that something can move faster than light is a good
>> > > > conversation-stopper in physics. People edge away from you in
>> cocktail
>> > > > parties; friends never return phone calls. You just don?t mess with
>> Albert
>> > > > Einstein."
>> > > > >
>> > > > > _______________________________________________
>> > > > > yt-users mailing list
>> > > > > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org
>> >>
>> > > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>
>> > > >
>> > > > -------------- next part --------------
>> > > > An HTML attachment was scrubbed...
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>> <
>> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160505/c4b4677e/attachment.htm>
>> <
>> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160505/c4b4677e/attachment.htm
>> <
>> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160505/c4b4677e/attachment.htm
>> >>
>> > > > >
>> > > >
>> > > > ------------------------------
>> > > >
>> > > > Subject: Digest Footer
>> > > >
>> > > > _______________________________________________
>> > > > yt-users mailing list
>> > > > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org
>> >>
>> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>
>> > > >
>> > > >
>> > > > ------------------------------
>> > > >
>> > > > End of yt-users Digest, Vol 99, Issue 15
>> > > > ****************************************
>> > > >
>> > >
>> > >
>> > >
>> > > --
>> > > *SK2*
>> > >
>> > > *"**Claiming that something can move faster than light is a good
>> > > conversation-stopper in physics. People edge away from you in cocktail
>> > > parties; friends never return phone calls. You just don?t mess with
>> Albert
>> > > Einstein.**"*
>> > > -------------- next part --------------
>> > > An HTML attachment was scrubbed...
>> > > URL: <
>> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160505/ef6bf628/attachment.htm
>> <
>> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160505/ef6bf628/attachment.htm>
>> <
>> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160505/ef6bf628/attachment.htm
>> <
>> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160505/ef6bf628/attachment.htm
>> >>>
>> > >
>> > > ------------------------------
>> > >
>> > > Subject: Digest Footer
>> > >
>> > > _______________________________________________
>> > > yt-users mailing list
>> > > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org
>> >>
>> > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>
>> > >
>> > >
>> > > ------------------------------
>> > >
>> > > End of yt-users Digest, Vol 99, Issue 16
>> > > ****************************************
>> > >
>> > >
>> > >
>> > > --
>> > > SK2
>> > >
>> > > "Claiming that something can move faster than light is a good
>> conversation-stopper in physics. People edge away from you in cocktail
>> parties; friends never return phone calls. You just don?t mess with Albert
>> Einstein."
>> > >
>> > > _______________________________________________
>> > > yt-users mailing list
>> > > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
>> > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>
>> >
>> > -------------- next part --------------
>> > An HTML attachment was scrubbed...
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>> <
>> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160505/a16fcce3/attachment.htm
>> >>
>> >
>> > ------------------------------
>> >
>> > Subject: Digest Footer
>> >
>> > _______________________________________________
>> > yt-users mailing list
>> > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
>> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>
>> >
>> >
>> > ------------------------------
>> >
>> > End of yt-users Digest, Vol 99, Issue 18
>> > ****************************************
>> >
>> >
>> >
>> > --
>> > SK2
>> >
>> > "Claiming that something can move faster than light is a good
>> conversation-stopper in physics. People edge away from you in cocktail
>> parties; friends never return phone calls. You just don?t mess with Albert
>> Einstein."
>> >
>> > _______________________________________________
>> > yt-users mailing list
>> > yt-users at lists.spacepope.org
>> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>
>> -------------- next part --------------
>> An HTML attachment was scrubbed...
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>> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160509/d0430834/attachment.htm
>> >
>>
>> ------------------------------
>>
>> Subject: Digest Footer
>>
>> _______________________________________________
>> yt-users mailing list
>> yt-users at lists.spacepope.org
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>
>>
>> ------------------------------
>>
>> End of yt-users Digest, Vol 99, Issue 23
>> ****************************************
>>
>
>
>
> --
> *SK2*
>
> *"**Claiming that something can move faster than light is a good
> conversation-stopper in physics. People edge away from you in cocktail
> parties; friends never return phone calls. You just don’t mess with Albert
> Einstein.**"*
>
>


-- 
*SK2*

*"**Claiming that something can move faster than light is a good
conversation-stopper in physics. People edge away from you in cocktail
parties; friends never return phone calls. You just don’t mess with Albert
Einstein.**"*
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