[yt-users] Updated yt dev and now have strange plotting error
Stephanie Tonnesen
stonnes at gmail.com
Fri Jun 24 13:10:28 PDT 2016
Hi Nathan,
So I tried to do that and now yt is totally broken.
Here is the printout after I typed in
$pip install -U matplotlib
Collecting matplotlib
Downloading matplotlib-1.5.1.tar.gz (54.0MB)
100% |################################| 54.0MB 8.8kB/s
Collecting numpy>=1.6 (from matplotlib)
Downloading numpy-1.11.0.tar.gz (4.2MB)
100% |################################| 4.2MB 105kB/s
Collecting python-dateutil (from matplotlib)
Downloading python_dateutil-2.5.3-py2.py3-none-any.whl (201kB)
100% |################################| 204kB 1.2MB/s
Collecting pytz (from matplotlib)
Downloading pytz-2016.4-py2.py3-none-any.whl (480kB)
100% |################################| 483kB 762kB/s
Collecting cycler (from matplotlib)
Downloading cycler-0.10.0-py2.py3-none-any.whl
Collecting pyparsing!=2.0.4,>=1.5.6 (from matplotlib)
Downloading pyparsing-2.1.5-py2.py3-none-any.whl (42kB)
100% |################################| 45kB 8.7MB/s
Requirement already up-to-date: six>=1.5 in
./yt-x86_64/lib/python2.7/site-packages/six-1.10.0-py2.7.egg (from
python-dateutil->matplotlib)
Building wheels for collected packages: matplotlib, numpy
Running setup.py bdist_wheel for matplotlib
Stored in directory:
/home/stonnes/.cache/pip/wheels/d8/38/3c/a388e11fd09f9b23f5e4cd74594197394d9fd65f91f64c4aa7
Running setup.py bdist_wheel for numpy
Stored in directory:
/home/stonnes/.cache/pip/wheels/d9/cc/5c/f60303cc48ac18e6bd359aa88e4fa50e8bd88fc7e9f001cfd8
Successfully built matplotlib numpy
Installing collected packages: numpy, python-dateutil, pytz, cycler,
pyparsing, matplotlib
Found existing installation: numpy 1.9.2
DEPRECATION: Uninstalling a distutils installed project (numpy) has
been deprecated and will be removed in a future version. This is due to the
fact that uninstalling a distutils project will only partially uninstall
the project.
Uninstalling numpy-1.9.2:
Successfully uninstalled numpy-1.9.2
Found existing installation: python-dateutil 2.4.2
Uninstalling python-dateutil-2.4.2:
Successfully uninstalled python-dateutil-2.4.2
Found existing installation: pytz 2015.7
Uninstalling pytz-2015.7:
Successfully uninstalled pytz-2015.7
Found existing installation: pyparsing 2.0.7
Uninstalling pyparsing-2.0.7:
Successfully uninstalled pyparsing-2.0.7
Found existing installation: matplotlib 1.4.3
Uninstalling matplotlib-1.4.3:
Successfully uninstalled matplotlib-1.4.3
Successfully installed cycler matplotlib numpy pyparsing python-dateutil
pytz
Traceback (most recent call last):
File "/home/stonnes/yt-x86_64/bin/pip", line 11, in <module>
sys.exit(main())
File
"/home/stonnes/yt-x86_64/lib/python2.7/site-packages/pip/__init__.py", line
217, in main
return command.main(cmd_args)
File
"/home/stonnes/yt-x86_64/lib/python2.7/site-packages/pip/basecommand.py",
line 248, in main
pip_version_check(session)
File
"/home/stonnes/yt-x86_64/lib/python2.7/site-packages/pip/utils/outdated.py",
line 102, in pip_version_check
installed_version = get_installed_version("pip")
File
"/home/stonnes/yt-x86_64/lib/python2.7/site-packages/pip/utils/__init__.py",
line 858, in get_installed_version
working_set = pkg_resources.WorkingSet()
File
"/home/stonnes/yt-x86_64/lib/python2.7/site-packages/pip/_vendor/pkg_resources/__init__.py",
line 629, in __init__
self.add_entry(entry)
File
"/home/stonnes/yt-x86_64/lib/python2.7/site-packages/pip/_vendor/pkg_resources/__init__.py",
line 685, in add_entry
for dist in find_distributions(entry, True):
File
"/home/stonnes/yt-x86_64/lib/python2.7/site-packages/pip/_vendor/pkg_resources/__init__.py",
line 2075, in find_eggs_in_zip
if metadata.has_metadata('PKG-INFO'):
File
"/home/stonnes/yt-x86_64/lib/python2.7/site-packages/pip/_vendor/pkg_resources/__init__.py",
line 1605, in has_metadata
return self.egg_info and self._has(self._fn(self.egg_info, name))
File
"/home/stonnes/yt-x86_64/lib/python2.7/site-packages/pip/_vendor/pkg_resources/__init__.py",
line 1963, in _has
return zip_path in self.zipinfo or zip_path in self._index()
File
"/home/stonnes/yt-x86_64/lib/python2.7/site-packages/pip/_vendor/pkg_resources/__init__.py",
line 1843, in zipinfo
return self._zip_manifests.load(self.loader.archive)
File
"/home/stonnes/yt-x86_64/lib/python2.7/site-packages/pip/_vendor/pkg_resources/__init__.py",
line 1783, in load
mtime = os.stat(path).st_mtime
OSError: [Errno 2] No such file or directory:
'/home/stonnes/yt-x86_64/lib/python2.7/site-packages/pytz-2015.7-py2.7.egg'
--
Dr. Stephanie Tonnesen
Alvin E. Nashman Postdoctoral Fellow
Carnegie Observatories, Pasadena, CA
stonnes at gmail.com
On Fri, Jun 24, 2016 at 12:56 PM, Nathan Goldbaum <nathan12343 at gmail.com>
wrote:
> Hi Stephanie,
>
> The quick fix is to update your matplotlib installation:
>
> $ pip install -U matplotlib
>
> There's an open pull request that fixes your issue, it should be merged
> soon:
>
>
> https://bitbucket.org/yt_analysis/yt/pull-requests/2234/fix-compatibility-with-matplotlib-143-and/diff
>
> -Nathan
>
> On Fri, Jun 24, 2016 at 2:39 PM, Stephanie Tonnesen <stonnes at gmail.com>
> wrote:
>
>> Hi yt-users,
>>
>> I just updated my yt dev and suddenly my plotting scripts don't work.
>> When I actually try and save my plot, I am told that I don't have "classic"
>> style available. I am not sure where this problem is coming from, does
>> anyone have some advice for me?
>>
>> The code commands:
>>
>> ds =
>> yt.load("/data001/stonnes/MWtype_BPtest/DD"+loop[i]+"/DDMWtestf"+loop[i])
>> ds.add_field(('gas','tracer'),function=tfrac)
>> logs = {('index','cylindrical_r'):False}
>> logs = {('gas','velocity_z'):False}
>> logs = {('gas','velocity_x'):False}
>> logs = {('gas','velocity_y'):False}
>> logs = {('gas','tracer'):False}
>>
>> ds.index
>> ds.field_info['gas','velocity_z'].take_log = False
>> ds.field_info['gas','velocity_x'].take_log = False
>>
>> plot6p = yt.ProjectionPlot(ds,"z","density")
>> plot6p.save()
>>
>> The error message:
>>
>> yt : [INFO ] 2016-06-24 12:25:04,736 Parameters:
>> current_time = 0
>> yt : [INFO ] 2016-06-24 12:25:04,736 Parameters:
>> domain_dimensions = [256 256 256]
>> yt : [INFO ] 2016-06-24 12:25:04,736 Parameters:
>> domain_left_edge = [ 0. 0. 0.]
>> yt : [INFO ] 2016-06-24 12:25:04,737 Parameters:
>> domain_right_edge = [ 1. 1. 1.]
>> yt : [INFO ] 2016-06-24 12:25:04,737 Parameters:
>> cosmological_simulation = 0.0
>>
>> Parsing Hierarchy : 0%| | 0/2503 [00:00<?, ?it/s]
>> Parsing Hierarchy : 100%|##########| 2503/2503 [00:00<00:00, 33786.39it/s]
>> yt : [INFO ] 2016-06-24 12:25:04,952 Gathering a field list (this may
>> take a moment.)
>> yt : [INFO ] 2016-06-24 12:25:50,114 Projection completed
>> yt : [INFO ] 2016-06-24 12:25:50,328 xlim = 0.000000 1.000000
>> yt : [INFO ] 2016-06-24 12:25:50,328 ylim = 0.000000 1.000000
>> yt : [INFO ] 2016-06-24 12:25:50,329 xlim = 0.000000 1.000000
>> yt : [INFO ] 2016-06-24 12:25:50,329 ylim = 0.000000 1.000000
>> yt : [INFO ] 2016-06-24 12:25:50,336 Making a fixed resolution buffer
>> of (('gas', 'density')) 800 by 800
>> yt : [INFO ] 2016-06-24 12:25:51,408 Saving plot
>> DDMWtestf0000_Projection_z_density.png
>> Traceback (most recent call last):
>> File "yt_slicesonly_allouts.py", line 29, in <module>
>> plot6p.save()
>> File
>> "/home/stonnes/yt-x86_64/src/yt-hg/yt/visualization/plot_container.py",
>> line 79, in newfunc
>> rv = f(*args, **kwargs)
>> File
>> "/home/stonnes/yt-x86_64/src/yt-hg/yt/visualization/plot_container.py",
>> line 575, in save
>> names.append(v.save(n, mpl_kwargs))
>> File
>> "/home/stonnes/yt-x86_64/src/yt-hg/yt/visualization/base_plot_types.py",
>> line 104, in save
>> with matplotlib_style_context():
>> File "/home/stonnes/yt-x86_64/lib/python2.7/contextlib.py", line 17, in
>> __enter__
>> return self.gen.next()
>> File
>> "/home/stonnes/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/style/core.py",
>> line 86, in context
>> use(name)
>> File
>> "/home/stonnes/yt-x86_64/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/style/core.py",
>> line 66, in use
>> raise ValueError(msg % style)
>> ValueError: 'classic' not found in the style library and input is not a
>> valid URL or path. See `style.available` for list of available styles.
>>
>> Thanks!
>> Stephanie
>> --
>> Dr. Stephanie Tonnesen
>> Alvin E. Nashman Postdoctoral Fellow
>> Carnegie Observatories, Pasadena, CA
>> stonnes at gmail.com
>>
>> _______________________________________________
>> yt-users mailing list
>> yt-users at lists.spacepope.org
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>
>>
>
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