[yt-users] Pyx + Tex

Mon Feb 15 10:51:59 PST 2016

Hi DK,

I didn't have the chance to look into this issue.  John R, did you 
manage to figure out a solution?

Thanks,
John

On 02/14/2016 07:54 PM, Koh, Daegene wrote:
> Hi John,
>
> Were you ever able to resolve this issue? I’m having the same problem on Comet.
>
> Cheers,
> DK
>
>> On Nov 25, 2015, at 10:06 AM, John Regan <johnanthonyregan at gmail.com> wrote:
>>
>> Hi All,
>>
>> I recently moved to working on a new machine and I've run into problems with eps_writer and pyx and tex. It seems pyx and tex are not talking to one another. I know pyx can sometimes have an iffy relationship with tex but does anyone know how to make them like each other?
>>
>> This is the output I get.
>>
>> yt : [INFO     ] 2015-11-25 14:51:23,198 xlim = 0.456408 0.541884
>> yt : [INFO     ] 2015-11-25 14:51:23,198 ylim = 0.482775 0.568251
>> yt : [INFO     ] 2015-11-25 14:51:23,200 Making a fixed resolution buffer of (('gas', 'H_number_density')) 800 by 800
>> Create Multiplot....
>> yt : [WARNING  ] 2015-11-25 14:51:24,085 No field specified.  Choosing first field (('gas', 'H2_fraction'))
>> yt : [WARNING  ] 2015-11-25 14:51:24,955 No field specified.  Choosing first field (('gas', 'H_number_density'))
>> still waiting for tex after 5 (of 60) seconds...
>> still waiting for tex after 10 (of 60) seconds...
>> still waiting for tex after 15 (of 60) seconds...
>> still waiting for tex after 20 (of 60) seconds...
>> still waiting for tex after 25 (of 60) seconds...
>> still waiting for tex after 30 (of 60) seconds...
>> still waiting for tex after 35 (of 60) seconds...
>> still waiting for tex after 40 (of 60) seconds...
>> still waiting for tex after 45 (of 60) seconds...
>> still waiting for tex after 50 (of 60) seconds...
>> still waiting for tex after 55 (of 60) seconds...
>> the timeout of 60 seconds expired and tex did not respond.
>> We try to finish the dvi due to an unhandled tex error
>> still waiting for tex after 5 (of 60) seconds...
>> still waiting for tex after 10 (of 60) seconds...
>> still waiting for tex after 15 (of 60) seconds...
>> still waiting for tex after 20 (of 60) seconds...
>> still waiting for tex after 25 (of 60) seconds...
>> still waiting for tex after 30 (of 60) seconds...
>> still waiting for tex after 35 (of 60) seconds...
>> still waiting for tex after 40 (of 60) seconds...
>> still waiting for tex after 45 (of 60) seconds...
>> still waiting for tex after 50 (of 60) seconds...
>> still waiting for tex after 55 (of 60) seconds...
>> the timeout of 60 seconds expired and tex did not respond.
>> Traceback (most recent call last):
>>    File "OnAxisMultiPlot_TimeSeries.py", line 173, in <module>
>>      figsize=(8,4), shrink_cb=1.8)
>>    File "/cosma/home/jregan/YT/yt-x86_64/src/yt-hg/yt/visualization/eps_writer.py", line 1164, in multiplot
>>      bbox = (100.0 * d.canvas.bbox().left().t,
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/canvas.py", line 156, in bbox
>>      obbox += cmd.bbox()
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/graph/graph.py", line 181, in bbox
>>      self.finish()
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/graph/graph.py", line 311, in finish
>>      self.doaxes()
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/graph/graph.py", line 588, in doaxes
>>      self.dolayout()
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/graph/graph.py", line 572, in dolayout
>>      self.doaxiscreate(axisname)
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/graph/graph.py", line 248, in doaxiscreate
>>      self.axes[axisname].create()
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/graph/axis/axis.py", line 586, in create
>>      self.canvas = self.axis.create(self.data, self.positioner, self.graphtexrunner, self.errorname)
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/graph/axis/axis.py", line 245, in create
>>      return _regularaxis._create(self, data, positioner, graphtexrunner, self.parter, self.rater, errorname)
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/graph/axis/axis.py", line 146, in _create
>>      return layout(data)
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/graph/axis/axis.py", line 141, in layout
>>      self.painter.paint(canvas, data, self, positioner)
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/graph/axis/painter.py", line 258, in paint
>>      _title.paint(self, canvas, data, axis, axispos)
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/graph/axis/painter.py", line 109, in paint
>>      title = canvas.layer("title").text_pt(x, y, axis.title, titleattrs)
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/canvas.py", line 334, in text_pt
>>      return self.insert(self.texrunner.text_pt(x, y, atext, *args))
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/text.py", line 1223, in text_pt
>>      return self.text(x * unit.t_pt, y * unit.t_pt, expr, *args, **kwargs)
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/text.py", line 1201, in text
>>      raise e
>> pyx.text.TexResultError: TeX didn't respond as expected within the timeout period (60 seconds).
>> The expression passed to TeX was:
>>    \scrollmode
>>    \raiseerror%
>>    \def\PyX{P\kern-.3em\lower.5ex\hbox{Y}\kern-.18em X}%
>>    \gdef\PyXBoxHAlign{0}%
>>    \newbox\PyXBox%
>>    \newbox\PyXBoxHAligned%
>>    \newdimen\PyXDimenHAlignLT%
>>    \newdimen\PyXDimenHAlignRT%
>>    \gdef\PyXFlushHAlign{0}%
>>    \def\PyXragged{%
>>    \leftskip=0pt plus \PyXFlushHAlign fil%
>>    \rightskip=0pt plus 1fil%
>>    \advance\rightskip0pt plus -\PyXFlushHAlign fil%
>>    \parfillskip=0pt%
>>    \pretolerance=9999%
>>    \tolerance=9999%
>>    \parindent=0pt%
>>    \hyphenpenalty=9999%
>>    \exhyphenpenalty=9999}%
>>    \newbox\PyXBoxVBox%
>>    \newdimen\PyXDimenVBox%
>>    \newbox\PyXBoxVAlign%
>>    \newdimen\PyXDimenVAlign%
>>    \newdimen\PyXDimenVShift%
>>    \long\def\ProcessPyXBox#1#2{%
>>    \setbox\PyXBox=\hbox{{#1}}%
>>    \PyXDimenHAlignLT=\PyXBoxHAlign\wd\PyXBox%
>>    \PyXDimenHAlignRT=\wd\PyXBox%
>>    \advance\PyXDimenHAlignRT by -\PyXDimenHAlignLT%
>>    \gdef\PyXBoxHAlign{0}%
>>    \immediate\write16{PyXBox:page=#2,lt=\the\PyXDimenHAlignLT,rt=\the\PyXDimenHAlignRT,ht=\the\ht\PyXBox,dp=\the\dp\PyXBox:}%
>>    \setbox\PyXBoxHAligned=\hbox{\kern-\PyXDimenHAlignLT\box\PyXBox}%
>>    \ht\PyXBoxHAligned0pt%
>>    {\count0=80\count1=121\count2=88\count3=#2\shipout\box\PyXBoxHAligned}}%
>>    \def\PyXInput#1{\immediate\write16{PyXInputMarker:executeid=#1:}}%
>>    \def\PyXMarker#1{\hskip0pt\special{PyX:marker #1}}%%
>>    \PyXInput{1}%
>> After parsing the return message from TeX, the following was left:
>>    This is TeX, Version 3.14159265 (TeX Live 2015) (preloaded format=tex)
>> Error in atexit._run_exitfuncs:
>> Traceback (most recent call last):
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/atexit.py", line 24, in _run_exitfuncs
>>      func(*targs, **kargs)
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/text.py", line 744, in _cleantmp
>>      texrunner.expectqueue.put_nowait(None)              # do not expect any output anymore
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/Queue.py", line 148, in put_nowait
>>      return self.put(item, False)
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/Queue.py", line 123, in put
>>      raise Full
>> Full
>> Error in sys.exitfunc:
>> Traceback (most recent call last):
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/atexit.py", line 24, in _run_exitfuncs
>>      func(*targs, **kargs)
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/site-packages/pyx/text.py", line 744, in _cleantmp
>>      texrunner.expectqueue.put_nowait(None)              # do not expect any output anymore
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/Queue.py", line 148, in put_nowait
>>      return self.put(item, False)
>>    File "/cosma/home/jregan/YT/yt-x86_64/lib/python2.7/Queue.py", line 123, in put
>>      raise Full
>> Queue.Full
>>
>>
>>
>> The call I make is:
>>
>> multi = eps.multiplot(NCOLS, NROWS, projections, bare_axes=True,cb_labels=colorbar_label, figsize=(8,4), shrink_cb=1.8)
>>
>> Cheers,
>> John
>>
>>
>>
>> _______________________________________________
>> yt-users mailing list
>> yt-users at lists.spacepope.org
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>
> _______________________________________________
> yt-users mailing list
> yt-users at lists.spacepope.org
> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>

-- 
John Wise
Assistant Professor of Physics
Center for Relativistic Astrophysics, Georgia Tech
http://cosmo.gatech.edu