[yt-users] yt update and error

tazkera haque h.tazkera at gmail.com
Thu Aug 25 21:25:00 PDT 2016 

HI Nathan ,

Thanks for your help but now it gives me a whole bunch of errors:

(yt-x86_64)login2.stampede(6)$ python setup.py develop
Unable to find pgen, not compiling formal grammar.
Traceback (most recent call last):
  File "setup.py", line 391, in <module>
    ext_modules=cython_extensions + extensions,
  File
"/work/03858/thaque56/sw/yt-3.1/yt-x86_64/lib/python2.7/distutils/core.py",
line 111, in setup
    _setup_distribution = dist = klass(attrs)
  File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 268, in
__init__
  File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 313, in
fetch_build_eggs
  File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 836,
in resolve

  File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 1081,
in best_match

  File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line 1093,
in obtain

  File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 380, in
fetch_build_egg
  File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py",
line 629, in easy_install
  File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py",
line 659, in install_item
  File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py",
line 842, in install_eggs
  File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py",
line 1070, in build_and_install
  File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py",
line 1056, in run_setup
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 240, in
run_setup
  File
"/work/03858/thaque56/sw/yt-3.1/yt-x86_64/lib/python2.7/contextlib.py",
line 35, in __exit__
    self.gen.throw(type, value, traceback)
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 193, in
setup_context
  File
"/work/03858/thaque56/sw/yt-3.1/yt-x86_64/lib/python2.7/contextlib.py",
line 35, in __exit__
    self.gen.throw(type, value, traceback)
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 152, in
save_modules
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 126, in
__exit__
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
  File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
dump
MemoryError


Tazkera

On Thu, Aug 25, 2016 at 11:51 PM, Nathan Goldbaum <nathan12343 at gmail.com>
wrote:

>
>
> On Thu, Aug 25, 2016 at 9:49 PM, tazkera haque <h.tazkera at gmail.com>
> wrote:
>
>> Hi people,
>>
>> I would like to upgrade yt to the latest version, I tried typing *yt
>> update *in a folder on cluster /work/03858/thaque56/sw/yt-3.1 and it
>> gives me following error:
>>
>> Traceback (most recent call last):
>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/bin/yt", line 9, in
>> <module>
>>     load_entry_point('yt==3.2.3', 'console_scripts', 'yt')()
>>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line
>> 558, in load_entry_point
>>
>>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line
>> 2682, in load_entry_point
>>
>>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line
>> 2355, in load
>>
>>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line
>> 2361, in resolve
>>
>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/yt/__init__.py",
>> line 123, in <module>
>>     from yt.data_objects.api import \
>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/yt/data_objects/api.py",
>> line 16, in <module>
>>     from .grid_patch import \
>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/yt/data_objects/grid_patch.py",
>> line 19, in <module>
>>     from yt.data_objects.data_containers import \
>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py",
>> line 55, in <module>
>>     from yt.utilities.parallel_tools.parallel_analysis_interface import \
>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/yt/utili
>> ties/parallel_tools/parallel_analysis_interface.py", line 33, in <module>
>>     from yt.utilities.lib.quad_tree import \
>> ImportError: No module named quad_tree
>>
>>
> $ cd /work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/
> $ hg --config extensions.purge= purge --all yt
> $ hg pull https://bitbucket.org/yt_analysis/yt
> $ hg update yt
> $ python setup.py develop
>
> This will put you on the latest in-development version of yt. If you'd
> instead like to be on the last stable release, do "hg update stable"
> instead of "hg update yt".
>
> "yt update" is supposed to automate this, but something seems to have gone
> wrong in your case. I'm not sure why.
>
>
>> and now I cannot excecute any of my python scripts there, please help me
>> upgrade and fix the problem. thanks
>>
>> Tazkera
>>
>> _______________________________________________
>> yt-users mailing list
>> yt-users at lists.spacepope.org
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>
>>
>
> _______________________________________________
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>
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