[yt-users] yt update and error

tazkera haque h.tazkera at gmail.com
Thu Aug 25 21:25:41 PDT 2016


and I did

$ cd /work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/
$ hg --config extensions.purge= purge --all yt
$ hg pull https://bitbucket.org/yt_analysis/yt
$ hg update stable
$ python setup.py develop

On Fri, Aug 26, 2016 at 12:25 AM, tazkera haque <h.tazkera at gmail.com> wrote:

> HI Nathan ,
>
> Thanks for your help but now it gives me a whole bunch of errors:
>
> (yt-x86_64)login2.stampede(6)$ python setup.py develop
> Unable to find pgen, not compiling formal grammar.
> Traceback (most recent call last):
>   File "setup.py", line 391, in <module>
>     ext_modules=cython_extensions + extensions,
>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/lib/python2.7/distutils/core.py",
> line 111, in setup
>     _setup_distribution = dist = klass(attrs)
>   File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 268, in
> __init__
>   File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 313, in
> fetch_build_eggs
>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line
> 836, in resolve
>
>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line
> 1081, in best_match
>
>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line
> 1093, in obtain
>
>   File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 380, in
> fetch_build_egg
>   File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py",
> line 629, in easy_install
>   File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py",
> line 659, in install_item
>   File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py",
> line 842, in install_eggs
>   File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py",
> line 1070, in build_and_install
>   File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py",
> line 1056, in run_setup
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 240, in
> run_setup
>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/lib/python2.7/contextlib.py",
> line 35, in __exit__
>     self.gen.throw(type, value, traceback)
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 193, in
> setup_context
>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/lib/python2.7/contextlib.py",
> line 35, in __exit__
>     self.gen.throw(type, value, traceback)
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 152, in
> save_modules
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 126, in
> __exit__
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110, in
> dump
> MemoryError
>
>
> Tazkera
>
> On Thu, Aug 25, 2016 at 11:51 PM, Nathan Goldbaum <nathan12343 at gmail.com>
> wrote:
>
>>
>>
>> On Thu, Aug 25, 2016 at 9:49 PM, tazkera haque <h.tazkera at gmail.com>
>> wrote:
>>
>>> Hi people,
>>>
>>> I would like to upgrade yt to the latest version, I tried typing *yt
>>> update *in a folder on cluster /work/03858/thaque56/sw/yt-3.1 and it
>>> gives me following error:
>>>
>>> Traceback (most recent call last):
>>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/bin/yt", line 9, in
>>> <module>
>>>     load_entry_point('yt==3.2.3', 'console_scripts', 'yt')()
>>>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line
>>> 558, in load_entry_point
>>>
>>>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line
>>> 2682, in load_entry_point
>>>
>>>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line
>>> 2355, in load
>>>
>>>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line
>>> 2361, in resolve
>>>
>>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/yt/__init__.py",
>>> line 123, in <module>
>>>     from yt.data_objects.api import \
>>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/yt/data_objects/api.py",
>>> line 16, in <module>
>>>     from .grid_patch import \
>>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/yt/data_objects/grid_patch.py",
>>> line 19, in <module>
>>>     from yt.data_objects.data_containers import \
>>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py",
>>> line 55, in <module>
>>>     from yt.utilities.parallel_tools.parallel_analysis_interface import
>>> \
>>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/yt/utili
>>> ties/parallel_tools/parallel_analysis_interface.py", line 33, in
>>> <module>
>>>     from yt.utilities.lib.quad_tree import \
>>> ImportError: No module named quad_tree
>>>
>>>
>> $ cd /work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/
>> $ hg --config extensions.purge= purge --all yt
>> $ hg pull https://bitbucket.org/yt_analysis/yt
>> $ hg update yt
>> $ python setup.py develop
>>
>> This will put you on the latest in-development version of yt. If you'd
>> instead like to be on the last stable release, do "hg update stable"
>> instead of "hg update yt".
>>
>> "yt update" is supposed to automate this, but something seems to have
>> gone wrong in your case. I'm not sure why.
>>
>>
>>> and now I cannot excecute any of my python scripts there, please help me
>>> upgrade and fix the problem. thanks
>>>
>>> Tazkera
>>>
>>> _______________________________________________
>>> yt-users mailing list
>>> yt-users at lists.spacepope.org
>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>>
>>>
>>
>> _______________________________________________
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>>
>>
>
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