[yt-users] Camera Options

Suoqing Ji suoqing at physics.ucsb.edu
Thu Apr 21 13:45:53 PDT 2016


Hi Sushi,

What you need to do this to make use of off-axis slice plot instead of camera; for example, in your code:

L = [1, 0, 0] # View along x axis
north_vector = [0, 0, 1]
slc = yt.SlicePlot(pf, L, “magnetic_field_x", width=(100,'km’), north_vector=north_vector)
slc.annotate_magnetic_field(factor=40, normalize=True)

which gives you the view along x axis. And if you want to rotate the viewing angle by, say 45 degree, you could change the normal vector L to be L = [1, 1, 0], and redo the plotting.

Also, when you load the data, you probably need to change the name “field_x” to be “magnetic_field_x” and so on, so the annotate_magnetic_field function will recognize these names.

Best wishes,
--
Suoqing JI
Ph.D Candidate
Department of Physics
University of California, Santa Barbara
http://web.physics.ucsb.edu/~suoqing

> On Apr 21, 2016, at 1:28 PM, Sushilkumar <sushil.sush19us at gmail.com> wrote:
> 
> Dear Suoqing Ji:
> 
> The fields Bx,By and Bz are already calculated taking into account the rotation. So I am not sure if I need to calculate it again. 
> 
> What I would like is only change the camera view to a desired angle after I do a slice plot and that is where I am having trouble with?
> 
> Thanks in advance.
> 
> 
> 
> 
> 
> 
> On Thu, Apr 21, 2016 at 3:20 PM, <yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org>> wrote:
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> Today's Topics:
> 
>    1. Re: Camera Options (Suoqing Ji)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Thu, 21 Apr 2016 13:20:32 -0700
> From: Suoqing Ji <suoqing at physics.ucsb.edu <mailto:suoqing at physics.ucsb.edu>>
> To: Discussion of the yt analysis package
>         <yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>
> Subject: Re: [yt-users] Camera Options
> Message-ID: <FB001F5B-2521-4705-8D31-3166451BCA58 at physics.ucsb.edu <mailto:FB001F5B-2521-4705-8D31-3166451BCA58 at physics.ucsb.edu>>
> Content-Type: text/plain; charset="utf-8"
> 
> I see ? that?s a smart way of doing this!
> 
> Best wishes,
> Suoqing
> 
> > On Apr 21, 2016, at 12:44 PM, Nathan Goldbaum <nathan12343 at gmail.com <mailto:nathan12343 at gmail.com>> wrote:
> >
> >
> >
> > On Thu, Apr 21, 2016 at 2:41 PM, Suoqing Ji <suoqing at physics.ucsb.edu <mailto:suoqing at physics.ucsb.edu> <mailto:suoqing at physics.ucsb.edu <mailto:suoqing at physics.ucsb.edu>>> wrote:
> > Hi Nathan,
> >
> > I do not have a 3D MHD data at hand, but I?ve tried one with slc.annotate_quiver('velocity_x', 'velocity_y'), which gives the following error:
> >
> >   File "off_axis.py", line 49, in <module>
> >     slc.save(pf.basename)
> >   File "/usr/local/yt3/yt-x86_64/src/yt-hg/yt/visualization/plot_container.py", line 76, in newfunc
> >     args[0].run_callbacks()
> >   File "/usr/local/yt3/yt-x86_64/src/yt-hg/yt/visualization/plot_window.py", line 1029, in run_callbacks
> >     sys.exc_info()[2])
> >   File "/usr/local/yt3/yt-x86_64/src/yt-hg/yt/visualization/plot_window.py", line 1025, in run_callbacks
> >     callback(cbw)
> >   File "/usr/local/yt3/yt-x86_64/src/yt-hg/yt/visualization/plot_modifications.py", line 352, in __call__
> >     (xi, yi) = (ds.coordinates.x_axis[ax],
> > yt.utilities.exceptions.YTPlotCallbackError: annotate_quiver callback failed with the following error: 4
> >
> >
> > Right, I bet it will work if you do `annotate_velocity()` though.
> >
> > You should take a look at the definition of the VelocityCallback to see how it handles off-axis slices.
> >
> > Best wishes,
> > --
> > Suoqing JI
> > Ph.D Candidate
> > Department of Physics
> > University of California, Santa Barbara
> > http://web.physics.ucsb.edu/~suoqing <http://web.physics.ucsb.edu/~suoqing> <http://web.physics.ucsb.edu/~suoqing <http://web.physics.ucsb.edu/~suoqing>>
> >> On Apr 21, 2016, at 12:35 PM, Nathan Goldbaum <nathan12343 at gmail.com <mailto:nathan12343 at gmail.com> <mailto:nathan12343 at gmail.com <mailto:nathan12343 at gmail.com>>> wrote:
> >>
> >>
> >>
> >> On Thu, Apr 21, 2016 at 2:30 PM, Suoqing Ji <suoqing at physics.ucsb.edu <mailto:suoqing at physics.ucsb.edu> <mailto:suoqing at physics.ucsb.edu <mailto:suoqing at physics.ucsb.edu>>> wrote:
> >> Hi Sushi,
> >>
> >> The quiver/streamline option you?ve used works for 2d plotting but not for volume rendering, so I might suggest to use off-axis slice plot: http://yt-project.org/doc/visualizing/plots.html#off-axis-slices <http://yt-project.org/doc/visualizing/plots.html#off-axis-slices> <http://yt-project.org/doc/visualizing/plots.html#off-axis-slices <http://yt-project.org/doc/visualizing/plots.html#off-axis-slices>>
> >>
> >> Unfortunately, quiver/streamline does not work (and/or does not work correctly) for off axis slice plot now, but your goal is still achievable via the following steps:
> >>
> >> Are you sure about that? There's a `CuttingQuiverCallback` for off-axis slices. If you do `annotate_magnetic_fields`, it will automatically choose the `CuttingQuiverCallback` for off-axis slices.
> >>
> >>
> >> 1. Use fixed resolution buffer to get the off-axis sliced field values including Bx, By and Bz (see this as an example, and replace SlicePlot with OffAxisSlicePlot: http://yt-project.org/docs/dev/cookbook/complex_plots.html?highlight=fixedresolutionbuffer#multi-plot-slice-and-projections <http://yt-project.org/docs/dev/cookbook/complex_plots.html?highlight=fixedresolutionbuffer#multi-plot-slice-and-projections> <http://yt-project.org/docs/dev/cookbook/complex_plots.html?highlight=fixedresolutionbuffer#multi-plot-slice-and-projections <http://yt-project.org/docs/dev/cookbook/complex_plots.html?highlight=fixedresolutionbuffer#multi-plot-slice-and-projections>>), then you get a 2D array for each field;
> >>
> >> 2. Compute the magnetic field vectors projected onto the rotated viewing plane (perpendicular to your normal vector), based on field values of Bx, By and Bz; now you have two 2D arrays for each components of B field vectors after rotation;
> >>
> >> 3. Use quiver function in matplotlib and plot the B field vectors after rotation, see: http://matplotlib.org/examples/pylab_examples/quiver_demo.html <http://matplotlib.org/examples/pylab_examples/quiver_demo.html> <http://matplotlib.org/examples/pylab_examples/quiver_demo.html <http://matplotlib.org/examples/pylab_examples/quiver_demo.html>>
> >>
> >> Hope this helps! Perhaps there?s an easier way that I do not know...
> >>
> >> Best wishes,
> >> --
> >> Suoqing JI
> >> Ph.D Candidate
> >> Department of Physics
> >> University of California, Santa Barbara
> >> http://web.physics.ucsb.edu/~suoqing <http://web.physics.ucsb.edu/~suoqing> <http://web.physics.ucsb.edu/~suoqing <http://web.physics.ucsb.edu/~suoqing>>
> >>> On Apr 21, 2016, at 10:31 AM, Sushilkumar <sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com> <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>>> wrote:
> >>>
> >>> Dear yt:
> >>>
> >>> I am having trouble with the camera option on yt.
> >>>
> >>> The google drive link is https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> <https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>
> >>>
> >>> I want to change the view of the camera at an angle after the Slice (x-z plane) and Quiver option.
> >>>
> >>> My script is yt_cam_rot.py. Without the camera options I get the desired plot (UniformGridData_Slice.png) but when I use the camera  I get a empty screen. I am not sure where I am going wrong.
> >>>
> >>> I am using these links for my reference
> >>>
> >>> http://yt-project.org/doc/cookbook/complex_plots.html#moving-a-volume-rendering-camera <http://yt-project.org/doc/cookbook/complex_plots.html#moving-a-volume-rendering-camera> <http://yt-project.org/doc/cookbook/complex_plots.html#moving-a-volume-rendering-camera <http://yt-project.org/doc/cookbook/complex_plots.html#moving-a-volume-rendering-camera>>
> >>> http://yt-project.org/doc/visualizing/volume_rendering.html#volume-rendering <http://yt-project.org/doc/visualizing/volume_rendering.html#volume-rendering> <http://yt-project.org/doc/visualizing/volume_rendering.html#volume-rendering <http://yt-project.org/doc/visualizing/volume_rendering.html#volume-rendering>>
> >>>
> >>> Thanks in advance
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>
> >>> On Fri, Apr 15, 2016 at 4:49 PM, Sushilkumar <sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com> <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>>> wrote:
> >>> Dear Suoqing JI:
> >>>
> >>> Thank you
> >>>
> >>> On Fri, Apr 15, 2016 at 12:59 PM,  <yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org>>> wrote:
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> >>> Today's Topics:
> >>>
> >>>    1. Re: Camera Options (Suoqing Ji)
> >>>
> >>>
> >>> ----------------------------------------------------------------------
> >>>
> >>> Message: 1
> >>> Date: Fri, 15 Apr 2016 10:59:22 -0700
> >>> From: Suoqing Ji <suoqing at physics.ucsb.edu <mailto:suoqing at physics.ucsb.edu> <mailto:suoqing at physics.ucsb.edu <mailto:suoqing at physics.ucsb.edu>>>
> >>> To: Discussion of the yt analysis package
> >>>         <yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> Subject: Re: [yt-users] Camera Options
> >>> Message-ID: <B885F215-5F0A-49D5-9712-2D8FCEAA1366 at physics.ucsb.edu <mailto:B885F215-5F0A-49D5-9712-2D8FCEAA1366 at physics.ucsb.edu> <mailto:B885F215-5F0A-49D5-9712-2D8FCEAA1366 at physics.ucsb.edu <mailto:B885F215-5F0A-49D5-9712-2D8FCEAA1366 at physics.ucsb.edu>>>
> >>> Content-Type: text/plain; charset="utf-8"
> >>>
> >>> Hi Sushi,
> >>>
> >>> I think the off-axis slice/projection plot will meet your requirement best, where the camera orientation is determined by the normal vector:
> >>>
> >>> http://yt-project.org/doc/visualizing/plots.html#off-axis-slices <http://yt-project.org/doc/visualizing/plots.html#off-axis-slices> <http://yt-project.org/doc/visualizing/plots.html#off-axis-slices <http://yt-project.org/doc/visualizing/plots.html#off-axis-slices>> <http://yt-project.org/doc/visualizing/plots.html#off-axis-slices <http://yt-project.org/doc/visualizing/plots.html#off-axis-slices> <http://yt-project.org/doc/visualizing/plots.html#off-axis-slices <http://yt-project.org/doc/visualizing/plots.html#off-axis-slices>>>
> >>> http://yt-project.org/doc/visualizing/plots.html#off-axis-projection-plots <http://yt-project.org/doc/visualizing/plots.html#off-axis-projection-plots> <http://yt-project.org/doc/visualizing/plots.html#off-axis-projection-plots <http://yt-project.org/doc/visualizing/plots.html#off-axis-projection-plots>> <http://yt-project.org/doc/visualizing/plots.html#off-axis-projection-plots <http://yt-project.org/doc/visualizing/plots.html#off-axis-projection-plots> <http://yt-project.org/doc/visualizing/plots.html#off-axis-projection-plots <http://yt-project.org/doc/visualizing/plots.html#off-axis-projection-plots>>>
> >>>
> >>> And of course, if you?re interested in the features provided by volume rendering, it?s also worth a try. This cookbook gives an example of moving a camera; specifically you might want to use the camera.rotation:
> >>>
> >>> http://yt-project.org/doc/cookbook/complex_plots.html#moving-a-volume-rendering-camera <http://yt-project.org/doc/cookbook/complex_plots.html#moving-a-volume-rendering-camera> <http://yt-project.org/doc/cookbook/complex_plots.html#moving-a-volume-rendering-camera <http://yt-project.org/doc/cookbook/complex_plots.html#moving-a-volume-rendering-camera>> <http://yt-project.org/doc/cookbook/complex_plots.html#moving-a-volume-rendering-camera <http://yt-project.org/doc/cookbook/complex_plots.html#moving-a-volume-rendering-camera> <http://yt-project.org/doc/cookbook/complex_plots.html#moving-a-volume-rendering-camera <http://yt-project.org/doc/cookbook/complex_plots.html#moving-a-volume-rendering-camera>>>
> >>>
> >>> Best wishes,
> >>> --
> >>> Suoqing JI
> >>> Ph.D Candidate
> >>> Department of Physics
> >>> University of California, Santa Barbara
> >>> http://web.physics.ucsb.edu/~suoqing <http://web.physics.ucsb.edu/~suoqing> <http://web.physics.ucsb.edu/~suoqing <http://web.physics.ucsb.edu/~suoqing>>
> >>>
> >>> > On Apr 15, 2016, at 8:38 AM, Sushilkumar <sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com> <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>>> wrote:
> >>> >
> >>> > Dear yt:
> >>> >
> >>> > I would like to change/customize/rotate my camera angle for my slice plots without rotating the axis.
> >>> >
> >>> > What options do I have using yt if I want to move my camera angle by say 45 degrees?
> >>> >
> >>> > Can I use the following link or can you suggest me something else
> >>> > http://yt-project.org/doc/visualizing/volume_rendering.html <http://yt-project.org/doc/visualizing/volume_rendering.html> <http://yt-project.org/doc/visualizing/volume_rendering.html <http://yt-project.org/doc/visualizing/volume_rendering.html>> <http://yt-project.org/doc/visualizing/volume_rendering.html <http://yt-project.org/doc/visualizing/volume_rendering.html> <http://yt-project.org/doc/visualizing/volume_rendering.html <http://yt-project.org/doc/visualizing/volume_rendering.html>>>
> >>> >
> >>> > Thanks in advance
> >>> >
> >>> >
> >>> >
> >>> > On Thu, Mar 31, 2016 at 10:11 PM, <yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org>> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org>>>> wrote:
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> >>> > Today's Topics:
> >>> >
> >>> >    1. Inclination problem (Sushilkumar)
> >>> >
> >>> >
> >>> > ----------------------------------------------------------------------
> >>> >
> >>> > Message: 1
> >>> > Date: Thu, 31 Mar 2016 22:11:09 -0500
> >>> > From: Sushilkumar <sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com> <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>> <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com> <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>>>>
> >>> > To: Discussion of the yt analysis package
> >>> >         <yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>>
> >>> > Subject: [yt-users] Inclination problem
> >>> > Message-ID:
> >>> >         <CAKARaKXPyQedHNjW0PwFvrO0qyjFGY4FMU6c2O5_PZWt-OxKEg at mail.gmail.com <mailto:CAKARaKXPyQedHNjW0PwFvrO0qyjFGY4FMU6c2O5_PZWt-OxKEg at mail.gmail.com> <mailto:CAKARaKXPyQedHNjW0PwFvrO0qyjFGY4FMU6c2O5_PZWt-OxKEg at mail.gmail.com <mailto:CAKARaKXPyQedHNjW0PwFvrO0qyjFGY4FMU6c2O5_PZWt-OxKEg at mail.gmail.com>><mailto:CAKARaKXPyQedHNjW0PwFvrO0qyjFGY4FMU6c2O5_PZWt-OxKEg at mail.gmail.com <mailto:CAKARaKXPyQedHNjW0PwFvrO0qyjFGY4FMU6c2O5_PZWt-OxKEg at mail.gmail.com> <mailto:CAKARaKXPyQedHNjW0PwFvrO0qyjFGY4FMU6c2O5_PZWt-OxKEg at mail.gmail.com <mailto:CAKARaKXPyQedHNjW0PwFvrO0qyjFGY4FMU6c2O5_PZWt-OxKEg at mail.gmail.com>>>>
> >>> > Content-Type: text/plain; charset="utf-8"
> >>> >
> >>> > Dear Nathan:
> >>> >
> >>> > Thank you very much, implementing now
> >>> >
> >>> >
> >>> > On Thu, Mar 31, 2016 at 9:50 AM, <yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org>> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org>>>>
> >>> > wrote:
> >>> >
> >>> > > Send yt-users mailing list submissions to
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> >>> > >
> >>> > > To subscribe or unsubscribe via the World Wide Web, visit
> >>> > >         http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > or, via email, send a message with subject or body 'help' to
> >>> > >         yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org>> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org>>>
> >>> > >
> >>> > > You can reach the person managing the list at
> >>> > >         yt-users-owner at lists.spacepope.org <mailto:yt-users-owner at lists.spacepope.org> <mailto:yt-users-owner at lists.spacepope.org <mailto:yt-users-owner at lists.spacepope.org>> <mailto:yt-users-owner at lists.spacepope.org <mailto:yt-users-owner at lists.spacepope.org> <mailto:yt-users-owner at lists.spacepope.org <mailto:yt-users-owner at lists.spacepope.org>>>
> >>> > >
> >>> > > When replying, please edit your Subject line so it is more specific
> >>> > > than "Re: Contents of yt-users digest..."
> >>> > >
> >>> > >
> >>> > > Today's Topics:
> >>> > >
> >>> > >    1. Re: Inclination problem (Nathan Goldbaum)
> >>> > >
> >>> > >
> >>> > > ----------------------------------------------------------------------
> >>> > >
> >>> > > Message: 1
> >>> > > Date: Thu, 31 Mar 2016 09:50:31 -0500
> >>> > > From: Nathan Goldbaum <nathan12343 at gmail.com <mailto:nathan12343 at gmail.com> <mailto:nathan12343 at gmail.com <mailto:nathan12343 at gmail.com>> <mailto:nathan12343 at gmail.com <mailto:nathan12343 at gmail.com> <mailto:nathan12343 at gmail.com <mailto:nathan12343 at gmail.com>>>>
> >>> > > To: Discussion of the yt analysis package
> >>> > >         <yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>>
> >>> > > Subject: Re: [yt-users] Inclination problem
> >>> > > Message-ID:
> >>> > >         <CAJXewOnvXjZ+shfKG4SPubn_TYTAbLUu8y9ZRvovzBu=
> >>> > > DcFZtQ at mail.gmail.com <mailto:DcFZtQ at mail.gmail.com> <mailto:DcFZtQ at mail.gmail.com <mailto:DcFZtQ at mail.gmail.com>> <mailto:DcFZtQ at mail.gmail.com <mailto:DcFZtQ at mail.gmail.com> <mailto:DcFZtQ at mail.gmail.com <mailto:DcFZtQ at mail.gmail.com>>>>
> >>> > > Content-Type: text/plain; charset="utf-8"
> >>> > >
> >>> > > Hi SK,
> >>> > >
> >>> > > I'm going to reference this example:
> >>> > >
> >>> > >
> >>> > > http://yt-project.org/doc/visualizing/streamlines.html?highlight=streamlines <http://yt-project.org/doc/visualizing/streamlines.html?highlight=streamlines> <http://yt-project.org/doc/visualizing/streamlines.html?highlight=streamlines <http://yt-project.org/doc/visualizing/streamlines.html?highlight=streamlines>> <http://yt-project.org/doc/visualizing/streamlines.html?highlight=streamlines <http://yt-project.org/doc/visualizing/streamlines.html?highlight=streamlines> <http://yt-project.org/doc/visualizing/streamlines.html?highlight=streamlines <http://yt-project.org/doc/visualizing/streamlines.html?highlight=streamlines>>>
> >>> > >
> >>> > > specifically this snippet:
> >>> > >
> >>> > > for stream in streamlines.streamlines:
> >>> > >     stream = stream[np.all(stream != 0.0, axis=1)]
> >>> > >     ax.plot3D(stream[:,0], stream[:,1], stream[:,2], alpha=0.1)
> >>> > >
> >>> > > Here, the 'stream' object is just a Nx3 numpy array, where N is the number
> >>> > > of points sampled along the streamline. So each row of the numpy array is
> >>> > > just the coordinates of the streamline along one direction.
> >>> > >
> >>> > > To answer your question, no, there's nothing in yt that will rotate the
> >>> > > streamlines into a new coordinate system. Fortunately you should be able to
> >>> > > do it yourself using e.g. an Euler angle rotation matrix. You will need to
> >>> > > identify the new coordinate system you would like to transform to,
> >>> > > calculate a 3D rotation matrix, then apply it using matrix multiplication
> >>> > > (e.g. np.dot, which supports broadcasting) to each coordinate along the
> >>> > > streamline.
> >>> > >
> >>> > > Hope that helps,
> >>> > >
> >>> > > Nathan
> >>> > >
> >>> > > On Thu, Mar 31, 2016 at 8:56 AM, Sushilkumar <sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com> <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>> <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com> <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>>>>
> >>> > > wrote:
> >>> > >
> >>> > > > Dear Matt:
> >>> > > >
> >>> > > > Pleas correct me if I am wrong but "off axis slices" takes slices of the
> >>> > > > plot that is already plotted.
> >>> > > >
> >>> > > > However, I would like to plot my data in a new coordinate frame
> >>> > > (x`,y`,z`)
> >>> > > > which is inclined at an angle of say alpha from the default (x,y,z)
> >>> > > frame.
> >>> > > >
> >>> > > > Or I would like to plot my data in a rotated frame (x`,y`,z`), which is
> >>> > > > rotated at an angle of alpha from (x,y,z).
> >>> > > >
> >>> > > >
> >>> > > >
> >>> > > >
> >>> > > > On Wed, Mar 30, 2016 at 5:01 PM, <yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org>> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org>>>>
> >>> > > > wrote:
> >>> > > >
> >>> > > >> Send yt-users mailing list submissions to
> >>> > > >>         yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >>
> >>> > > >> To subscribe or unsubscribe via the World Wide Web, visit
> >>> > > >>         http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> or, via email, send a message with subject or body 'help' to
> >>> > > >>         yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org>> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org>>>
> >>> > > >>
> >>> > > >> You can reach the person managing the list at
> >>> > > >>         yt-users-owner at lists.spacepope.org <mailto:yt-users-owner at lists.spacepope.org> <mailto:yt-users-owner at lists.spacepope.org <mailto:yt-users-owner at lists.spacepope.org>> <mailto:yt-users-owner at lists.spacepope.org <mailto:yt-users-owner at lists.spacepope.org> <mailto:yt-users-owner at lists.spacepope.org <mailto:yt-users-owner at lists.spacepope.org>>>
> >>> > > >>
> >>> > > >> When replying, please edit your Subject line so it is more specific
> >>> > > >> than "Re: Contents of yt-users digest..."
> >>> > > >>
> >>> > > >>
> >>> > > >> Today's Topics:
> >>> > > >>
> >>> > > >>    1. Re: load spherical polar coordinate data with mesh refinement
> >>> > > >>       in HDF5 (Jiang, Yanfei)
> >>> > > >>    2. Re: load spherical polar coordinate data with mesh refinement
> >>> > > >>       in HDF5 (Matthew Turk)
> >>> > > >>    3. Re: Inclination problem (Matthew Turk)
> >>> > > >>    4. Re: load spherical polar coordinate data with mesh refinement
> >>> > > >>       in HDF5 (Jonah Miller)
> >>> > > >>
> >>> > > >>
> >>> > > >> ----------------------------------------------------------------------
> >>> > > >>
> >>> > > >> Message: 1
> >>> > > >> Date: Wed, 30 Mar 2016 15:49:26 -0400
> >>> > > >> From: "Jiang, Yanfei" <yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu>> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu>>>>
> >>> > > >> To: Discussion of the yt analysis package
> >>> > > >>         <yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>>
> >>> > > >> Subject: Re: [yt-users] load spherical polar coordinate data with mesh
> >>> > > >>         refinement in HDF5
> >>> > > >> Message-ID:
> >>> > > >>         <
> >>> > > >> CANixPav-VmbXfhNvmA5wb5gj19mF+-Ryq5YD-LrYrByDe3Ne7A at mail.gmail.com <mailto:CANixPav-VmbXfhNvmA5wb5gj19mF%2B-Ryq5YD-LrYrByDe3Ne7A at mail.gmail.com> <mailto:CANixPav-VmbXfhNvmA5wb5gj19mF%2B-Ryq5YD-LrYrByDe3Ne7A at mail.gmail.com <mailto:CANixPav-VmbXfhNvmA5wb5gj19mF%252B-Ryq5YD-LrYrByDe3Ne7A at mail.gmail.com>> <mailto:CANixPav-VmbXfhNvmA5wb5gj19mF%2B-Ryq5YD-LrYrByDe3Ne7A at mail.gmail.com <mailto:CANixPav-VmbXfhNvmA5wb5gj19mF%252B-Ryq5YD-LrYrByDe3Ne7A at mail.gmail.com> <mailto:CANixPav-VmbXfhNvmA5wb5gj19mF%252B-Ryq5YD-LrYrByDe3Ne7A at mail.gmail.com <mailto:CANixPav-VmbXfhNvmA5wb5gj19mF%25252B-Ryq5YD-LrYrByDe3Ne7A at mail.gmail.com>>>>
> >>> > > >> Content-Type: text/plain; charset="utf-8"
> >>> > > >>
> >>> > > >> Hi Jonah,
> >>> > > >>
> >>> > > >>    I am able to load the data to yt now using load_amr_grids(). I notice
> >>> > > >> that it can also set geometry to spherical. This is great. But to make
> >>> > > >> life
> >>> > > >> more complicate. Is it possible to let yt know that the grid is
> >>> > > >> logarithmic? Currently, load_amr_grids() just take left and right edges
> >>> > > of
> >>> > > >> each block. I guess yt assumes the grid is uniform between left and
> >>> > > right
> >>> > > >> edges. Is it possible to provide arrays of coordinate values for each
> >>> > > cell
> >>> > > >> in each block?
> >>> > > >>
> >>> > > >> Thanks.
> >>> > > >>
> >>> > > >> On Tue, Mar 29, 2016 at 6:58 PM, Jonah Miller <
> >>> > > >> jonah.maxwell.miller at gmail.com <mailto:jonah.maxwell.miller at gmail.com> <mailto:jonah.maxwell.miller at gmail.com <mailto:jonah.maxwell.miller at gmail.com>> <mailto:jonah.maxwell.miller at gmail.com <mailto:jonah.maxwell.miller at gmail.com> <mailto:jonah.maxwell.miller at gmail.com <mailto:jonah.maxwell.miller at gmail.com>>>> wrote:
> >>> > > >>
> >>> > > >> > Hi Yan-Feng,
> >>> > > >> >
> >>> > > >> > I haven't tried it, but I think there is functionality for this. You
> >>> > > can
> >>> > > >> > use the load_amr_grids() function which can load amr data in
> >>> > > Cartesian,
> >>> > > >> > spherical, or polar coordinates. Here's the documentation:
> >>> > > >> >
> >>> > > >> >
> >>> > > >>
> >>> > > http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array> <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array>> <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array> <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array>>>
> >>> > > >> >
> >>> > > >> >
> >>> > > >> >
> >>> > > >>
> >>> > > http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids> <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids>> <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids> <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids>>>
> >>> > > >> >
> >>> > > >> > Best,
> >>> > > >> > Jonah
> >>> > > >> >
> >>> > > >> > On Tue, Mar 29, 2016, 6:35 PM Jiang, Yanfei <
> >>> > > >> yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu>> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu>>>>
> >>> > > >> > wrote:
> >>> > > >> >
> >>> > > >> >> Hi,
> >>> > > >> >>          I have some data from a new version of Athena simulations.
> >>> > > It
> >>> > > >> is
> >>> > > >> >> in spherical polar coordinate with mesh refinement written in HDF5.
> >>> > > The
> >>> > > >> >> data structure is similar to flash data but not the same. Does anyone
> >>> > > >> have
> >>> > > >> >> suggestions to load such data to yt directly?
> >>> > > >> >>
> >>> > > >> >> Thank you.
> >>> > > >> >> --
> >>> > > >> >> Yan-Fei Jiang
> >>> > > >> >>
> >>> > > >> >> Einstein Fellow
> >>> > > >> >> Harvard-Smithsonian Center for Astrophysics
> >>> > > >> >> 60 Garden Street, Cambridge MA USA 02138
> >>> > > >> >> _______________________________________________
> >>> > > >> >> yt-users mailing list
> >>> > > >> >> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> >>
> >>> > > >> >
> >>> > > >> > _______________________________________________
> >>> > > >> > yt-users mailing list
> >>> > > >> > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> >
> >>> > > >> >
> >>> > > >>
> >>> > > >>
> >>> > > >> --
> >>> > > >> Yan-Fei Jiang
> >>> > > >>
> >>> > > >> Einstein Fellow
> >>> > > >> Harvard-Smithsonian Center for Astrophysics
> >>> > > >> 60 Garden Street, Cambridge MA USA 02138
> >>> > > >> -------------- next part --------------
> >>> > > >> An HTML attachment was scrubbed...
> >>> > > >> URL: <
> >>> > > >>
> >>> > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160330/aedc3b19/attachment-0001.htm <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160330/aedc3b19/attachment-0001.htm> <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160330/aedc3b19/attachment-0001.htm <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160330/aedc3b19/attachment-0001.htm>><http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160330/aedc3b19/attachment-0001.htm <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160330/aedc3b19/attachment-0001.htm> <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160330/aedc3b19/attachment-0001.htm <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160330/aedc3b19/attachment-0001.htm>>>
> >>> > > >> >
> >>> > > >>
> >>> > > >> ------------------------------
> >>> > > >>
> >>> > > >> Message: 2
> >>> > > >> Date: Wed, 30 Mar 2016 16:15:30 -0500
> >>> > > >> From: Matthew Turk <matthewturk at gmail.com <mailto:matthewturk at gmail.com> <mailto:matthewturk at gmail.com <mailto:matthewturk at gmail.com>> <mailto:matthewturk at gmail.com <mailto:matthewturk at gmail.com> <mailto:matthewturk at gmail.com <mailto:matthewturk at gmail.com>>>>
> >>> > > >> To: Discussion of the yt analysis package
> >>> > > >>         <yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>>
> >>> > > >> Subject: Re: [yt-users] load spherical polar coordinate data with mesh
> >>> > > >>         refinement in HDF5
> >>> > > >> Message-ID:
> >>> > > >>         <CALO3=
> >>> > > >> 5F1-_9V5XHS4vF_eXvKoPerz3Zo20X8uPtcFjQSAQS1MA at mail.gmail.com <mailto:5F1-_9V5XHS4vF_eXvKoPerz3Zo20X8uPtcFjQSAQS1MA at mail.gmail.com> <mailto:5F1-_9V5XHS4vF_eXvKoPerz3Zo20X8uPtcFjQSAQS1MA at mail.gmail.com <mailto:5F1-_9V5XHS4vF_eXvKoPerz3Zo20X8uPtcFjQSAQS1MA at mail.gmail.com>> <mailto:5F1-_9V5XHS4vF_eXvKoPerz3Zo20X8uPtcFjQSAQS1MA at mail.gmail.com <mailto:5F1-_9V5XHS4vF_eXvKoPerz3Zo20X8uPtcFjQSAQS1MA at mail.gmail.com> <mailto:5F1-_9V5XHS4vF_eXvKoPerz3Zo20X8uPtcFjQSAQS1MA at mail.gmail.com <mailto:5F1-_9V5XHS4vF_eXvKoPerz3Zo20X8uPtcFjQSAQS1MA at mail.gmail.com>>>>
> >>> > > >> Content-Type: text/plain; charset=UTF-8
> >>> > > >>
> >>> > > >> Hi Yanfei,
> >>> > > >>
> >>> > > >> This is possible -- but it will also slow some things down.  You can
> >>> > > >> use the load_hexahedral_mesh function, and there're examples of this.
> >>> > > >> This takes away some of the optimizations that regular grids can do,
> >>> > > >> but we're hoping to add them back in shortly.  Like the other
> >>> > > >> functions it too takes a geometry argument.
> >>> > > >>
> >>> > > >> -Matt
> >>> > > >>
> >>> > > >> On Wed, Mar 30, 2016 at 2:49 PM, Jiang, Yanfei
> >>> > > >> <yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu>> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu>>>> wrote:
> >>> > > >> > Hi Jonah,
> >>> > > >> >
> >>> > > >> >    I am able to load the data to yt now using load_amr_grids(). I
> >>> > > notice
> >>> > > >> > that it can also set geometry to spherical. This is great. But to make
> >>> > > >> life
> >>> > > >> > more complicate. Is it possible to let yt know that the grid is
> >>> > > >> logarithmic?
> >>> > > >> > Currently, load_amr_grids() just take left and right edges of each
> >>> > > >> block. I
> >>> > > >> > guess yt assumes the grid is uniform between left and right edges. Is
> >>> > > it
> >>> > > >> > possible to provide arrays of coordinate values for each cell in each
> >>> > > >> block?
> >>> > > >> >
> >>> > > >> > Thanks.
> >>> > > >> >
> >>> > > >> > On Tue, Mar 29, 2016 at 6:58 PM, Jonah Miller
> >>> > > >> > <jonah.maxwell.miller at gmail.com <mailto:jonah.maxwell.miller at gmail.com> <mailto:jonah.maxwell.miller at gmail.com <mailto:jonah.maxwell.miller at gmail.com>> <mailto:jonah.maxwell.miller at gmail.com <mailto:jonah.maxwell.miller at gmail.com> <mailto:jonah.maxwell.miller at gmail.com <mailto:jonah.maxwell.miller at gmail.com>>>> wrote:
> >>> > > >> >>
> >>> > > >> >> Hi Yan-Feng,
> >>> > > >> >>
> >>> > > >> >> I haven't tried it, but I think there is functionality for this. You
> >>> > > >> can
> >>> > > >> >> use the load_amr_grids() function which can load amr data in
> >>> > > Cartesian,
> >>> > > >> >> spherical, or polar coordinates. Here's the documentation:
> >>> > > >> >>
> >>> > > >> >>
> >>> > > >> >>
> >>> > > >>
> >>> > > http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array> <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array>> <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array> <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array>>>
> >>> > > >> >>
> >>> > > >> >>
> >>> > > >> >>
> >>> > > >>
> >>> > > http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids> <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids>> <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids> <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids>>>
> >>> > > >> >>
> >>> > > >> >> Best,
> >>> > > >> >> Jonah
> >>> > > >> >>
> >>> > > >> >> On Tue, Mar 29, 2016, 6:35 PM Jiang, Yanfei <
> >>> > > >> yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu>> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu>>>>
> >>> > > >> >> wrote:
> >>> > > >> >>>
> >>> > > >> >>> Hi,
> >>> > > >> >>>          I have some data from a new version of Athena simulations.
> >>> > > >> It is
> >>> > > >> >>> in spherical polar coordinate with mesh refinement written in HDF5.
> >>> > > >> The data
> >>> > > >> >>> structure is similar to flash data but not the same. Does anyone
> >>> > > have
> >>> > > >> >>> suggestions to load such data to yt directly?
> >>> > > >> >>>
> >>> > > >> >>> Thank you.
> >>> > > >> >>> --
> >>> > > >> >>> Yan-Fei Jiang
> >>> > > >> >>>
> >>> > > >> >>> Einstein Fellow
> >>> > > >> >>> Harvard-Smithsonian Center for Astrophysics
> >>> > > >> >>> 60 Garden Street, Cambridge MA USA 02138
> >>> > > >> >>> _______________________________________________
> >>> > > >> >>> yt-users mailing list
> >>> > > >> >>> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> >>
> >>> > > >> >>
> >>> > > >> >> _______________________________________________
> >>> > > >> >> yt-users mailing list
> >>> > > >> >> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> >>
> >>> > > >> >
> >>> > > >> >
> >>> > > >> >
> >>> > > >> > --
> >>> > > >> > Yan-Fei Jiang
> >>> > > >> >
> >>> > > >> > Einstein Fellow
> >>> > > >> > Harvard-Smithsonian Center for Astrophysics
> >>> > > >> > 60 Garden Street, Cambridge MA USA 02138
> >>> > > >> >
> >>> > > >> > _______________________________________________
> >>> > > >> > yt-users mailing list
> >>> > > >> > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> >
> >>> > > >>
> >>> > > >>
> >>> > > >> ------------------------------
> >>> > > >>
> >>> > > >> Message: 3
> >>> > > >> Date: Wed, 30 Mar 2016 16:16:22 -0500
> >>> > > >> From: Matthew Turk <matthewturk at gmail.com <mailto:matthewturk at gmail.com> <mailto:matthewturk at gmail.com <mailto:matthewturk at gmail.com>> <mailto:matthewturk at gmail.com <mailto:matthewturk at gmail.com> <mailto:matthewturk at gmail.com <mailto:matthewturk at gmail.com>>>>
> >>> > > >> To: Discussion of the yt analysis package
> >>> > > >>         <yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>>
> >>> > > >> Subject: Re: [yt-users] Inclination problem
> >>> > > >> Message-ID:
> >>> > > >>         <CALO3=5HMB=
> >>> > > >> joejr6BBh+zdxkwGzJS2NPrkK9tvMJnbch5-7BgQ at mail.gmail.com <mailto:joejr6BBh%2BzdxkwGzJS2NPrkK9tvMJnbch5-7BgQ at mail.gmail.com> <mailto:joejr6BBh%2BzdxkwGzJS2NPrkK9tvMJnbch5-7BgQ at mail.gmail.com <mailto:joejr6BBh%252BzdxkwGzJS2NPrkK9tvMJnbch5-7BgQ at mail.gmail.com>><mailto:joejr6BBh%2BzdxkwGzJS2NPrkK9tvMJnbch5-7BgQ at mail.gmail.com <mailto:joejr6BBh%252BzdxkwGzJS2NPrkK9tvMJnbch5-7BgQ at mail.gmail.com> <mailto:joejr6BBh%252BzdxkwGzJS2NPrkK9tvMJnbch5-7BgQ at mail.gmail.com <mailto:joejr6BBh%25252BzdxkwGzJS2NPrkK9tvMJnbch5-7BgQ at mail.gmail.com>>>>
> >>> > > >> Content-Type: text/plain; charset=UTF-8
> >>> > > >>
> >>> > > >> Hi SK,
> >>> > > >>
> >>> > > >> I'm not sure I totally understand, but if you have an inclination
> >>> > > >> angle you can use this directly in yt in the off axis slices and so
> >>> > > >> on.  They typically take a vector, but you should be able to convert
> >>> > > >> one to the other.
> >>> > > >>
> >>> > > >> -Matt
> >>> > > >>
> >>> > > >> On Tue, Mar 29, 2016 at 1:37 PM, Sushilkumar <sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com> <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>><mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com> <mailto:sushil.sush19us at gmail.com <mailto:sushil.sush19us at gmail.com>>>
> >>> > > >
> >>> > > >> wrote:
> >>> > > >> > Dear yt:
> >>> > > >> >
> >>> > > >> > I am trying to numerically solve the region around a pulsar. Now since
> >>> > > >> > pulsar is an inclined rotator with inclination angle between rotation
> >>> > > >> axis
> >>> > > >> > and dipole axis I would like to include in my yt script.
> >>> > > >> >
> >>> > > >> > My original code written in FORTRAN incorporated this inclination but
> >>> > > >> how
> >>> > > >> > would I incorporate it into my visualization using yt without changing
> >>> > > >> my
> >>> > > >> > data.
> >>> > > >> >
> >>> > > >> > Could you suggest ways for the same?
> >>> > > >> >
> >>> > > >> > The google drive link to my script (streamline.py) and streamline plot
> >>> > > >> > (streamline_t000.png) is included
> >>> > > >> >
> >>> > > >> > https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> <https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>> <https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc> <https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc <https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc>>>
> >>> > > >> >
> >>> > > >> > Thanks in advance
> >>> > > >> >
> >>> > > >> > On Tue, Mar 29, 2016 at 12:54 PM, <
> >>> > > yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org>> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org>>>
> >>> > > >> >
> >>> > > >> > wrote:
> >>> > > >> >>
> >>> > > >> >> Send yt-users mailing list submissions to
> >>> > > >> >>         yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> >>
> >>> > > >> >> To subscribe or unsubscribe via the World Wide Web, visit
> >>> > > >> >>
> >>> > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> >> or, via email, send a message with subject or body 'help' to
> >>> > > >> >>         yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org>> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org> <mailto:yt-users-request at lists.spacepope.org <mailto:yt-users-request at lists.spacepope.org>>>
> >>> > > >> >>
> >>> > > >> >> You can reach the person managing the list at
> >>> > > >> >>         yt-users-owner at lists.spacepope.org <mailto:yt-users-owner at lists.spacepope.org> <mailto:yt-users-owner at lists.spacepope.org <mailto:yt-users-owner at lists.spacepope.org>> <mailto:yt-users-owner at lists.spacepope.org <mailto:yt-users-owner at lists.spacepope.org> <mailto:yt-users-owner at lists.spacepope.org <mailto:yt-users-owner at lists.spacepope.org>>>
> >>> > > >> >>
> >>> > > >> >> When replying, please edit your Subject line so it is more specific
> >>> > > >> >> than "Re: Contents of yt-users digest..."
> >>> > > >> >>
> >>> > > >> >>
> >>> > > >> >> Today's Topics:
> >>> > > >> >>
> >>> > > >> >>    1. Re: gadget onto unigrid (Carla Bernhardt)
> >>> > > >> >>    2. Re: gadget onto unigrid (Matthew Turk)
> >>> > > >> >>
> >>> > > >> >>
> >>> > > >> >>
> >>> > > ----------------------------------------------------------------------
> >>> > > >> >>
> >>> > > >> >> Message: 1
> >>> > > >> >> Date: Tue, 29 Mar 2016 15:55:27 +0200
> >>> > > >> >> From: Carla Bernhardt <carla.j.bernhardt at gmail.com <mailto:carla.j.bernhardt at gmail.com> <mailto:carla.j.bernhardt at gmail.com <mailto:carla.j.bernhardt at gmail.com>> <mailto:carla.j.bernhardt at gmail.com <mailto:carla.j.bernhardt at gmail.com> <mailto:carla.j.bernhardt at gmail.com <mailto:carla.j.bernhardt at gmail.com>>>>
> >>> > > >> >> To: Discussion of the yt analysis package
> >>> > > >> >>         <yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>>
> >>> > > >> >> Subject: Re: [yt-users] gadget onto unigrid
> >>> > > >> >> Message-ID:
> >>> > > >> >>
> >>> > > >> >> <CAFK0O=2vH24ViqeZ5QS3DY3uido0kEaF=UhyGS_beuiUMbw7Ag at mail.gmail.com <mailto:UhyGS_beuiUMbw7Ag at mail.gmail.com> <mailto:UhyGS_beuiUMbw7Ag at mail.gmail.com <mailto:UhyGS_beuiUMbw7Ag at mail.gmail.com>><mailto:UhyGS_beuiUMbw7Ag at mail.gmail.com <mailto:UhyGS_beuiUMbw7Ag at mail.gmail.com> <mailto:UhyGS_beuiUMbw7Ag at mail.gmail.com <mailto:UhyGS_beuiUMbw7Ag at mail.gmail.com>>>>
> >>> > > >> >> Content-Type: text/plain; charset="utf-8"
> >>> > > >> >>
> >>> > > >> >> Hi All,
> >>> > > >> >>
> >>> > > >> >> A follow-up question: In using arbitrary_grid (but with enzo data),
> >>> > > how
> >>> > > >> >> does one then extract a field of an arbitrary_grid? I tried
> >>> > > >> >> arbgrid["density"] as I have done with a smoothed_covering_grid
> >>> > > object,
> >>> > > >> >> but
> >>> > > >> >> it does not work (here is the traceback <
> >>> > > http://pastebin.com/afgcgpp0 <http://pastebin.com/afgcgpp0> <http://pastebin.com/afgcgpp0 <http://pastebin.com/afgcgpp0>> <http://pastebin.com/afgcgpp0 <http://pastebin.com/afgcgpp0> <http://pastebin.com/afgcgpp0 <http://pastebin.com/afgcgpp0>>>>
> >>> > > >> I
> >>> > > >> >> got).
> >>> > > >> >>
> >>> > > >> >> Thanks,
> >>> > > >> >> Carla
> >>> > > >> >>
> >>> > > >> >> 2016-02-23 17:21 GMT+01:00 Matthew Turk <matthewturk at gmail.com <mailto:matthewturk at gmail.com> <mailto:matthewturk at gmail.com <mailto:matthewturk at gmail.com>> <mailto:matthewturk at gmail.com <mailto:matthewturk at gmail.com> <mailto:matthewturk at gmail.com <mailto:matthewturk at gmail.com>>>>:
> >>> > > >> >>
> >>> > > >> >> > Hi Desika,
> >>> > > >> >> >
> >>> > > >> >> > Yup, this can be done reasonably easily using either the
> >>> > > >> >> > .arbitrary_grid object (which was designed for this) or the
> >>> > > interface
> >>> > > >> >> > to the arbitrary grid that's in the development version, which is
> >>> > > >> >> > ds.r[ ... ] where the ... is some combination of bounds and steps.
> >>> > > >> >> >
> >>> > > >> >> >
> >>> > > http://yt-project.org/docs/dev/analyzing/objects.html#arbitrary-grid <http://yt-project.org/docs/dev/analyzing/objects.html#arbitrary-grid> <http://yt-project.org/docs/dev/analyzing/objects.html#arbitrary-grid <http://yt-project.org/docs/dev/analyzing/objects.html#arbitrary-grid>> <http://yt-project.org/docs/dev/analyzing/objects.html#arbitrary-grid <http://yt-project.org/docs/dev/analyzing/objects.html#arbitrary-grid> <http://yt-project.org/docs/dev/analyzing/objects.html#arbitrary-grid <http://yt-project.org/docs/dev/analyzing/objects.html#arbitrary-grid>>>
> >>> > > >> >> >
> >>> > > >> >> >
> >>> > > >> >> >
> >>> > > >>
> >>> > > http://yt-project.org/docs/dev/analyzing/objects.html#slicing-syntax-for-selecting-data <http://yt-project.org/docs/dev/analyzing/objects.html#slicing-syntax-for-selecting-data> <http://yt-project.org/docs/dev/analyzing/objects.html#slicing-syntax-for-selecting-data <http://yt-project.org/docs/dev/analyzing/objects.html#slicing-syntax-for-selecting-data>> <http://yt-project.org/docs/dev/analyzing/objects.html#slicing-syntax-for-selecting-data <http://yt-project.org/docs/dev/analyzing/objects.html#slicing-syntax-for-selecting-data> <http://yt-project.org/docs/dev/analyzing/objects.html#slicing-syntax-for-selecting-data <http://yt-project.org/docs/dev/analyzing/objects.html#slicing-syntax-for-selecting-data>>>
> >>> > > >> >> >
> >>> > > >> >> > On Tue, Feb 23, 2016 at 10:18 AM, Desika Narayanan
> >>> > > >> >> > <desika.narayanan at gmail.com <mailto:desika.narayanan at gmail.com> <mailto:desika.narayanan at gmail.com <mailto:desika.narayanan at gmail.com>> <mailto:desika.narayanan at gmail.com <mailto:desika.narayanan at gmail.com> <mailto:desika.narayanan at gmail.com <mailto:desika.narayanan at gmail.com>>>> wrote:
> >>> > > >> >> > > Hi All,
> >>> > > >> >> > >
> >>> > > >> >> > > Is it possible to deposit the particles from a gadget data set
> >>> > > >> onto a
> >>> > > >> >> > > uniform grid in yt?  Or, could it be possible to trick the octree
> >>> > > >> >> > deposition
> >>> > > >> >> > > into doing it by forcing no refinements, but some sort of native
> >>> > > >> grid
> >>> > > >> >> > > resolution?
> >>> > > >> >> > >
> >>> > > >> >> > > thanks,
> >>> > > >> >> > > desika
> >>> > > >> >> > >
> >>> > > >> >> > >
> >>> > > >> >> > > _______________________________________________
> >>> > > >> >> > > yt-users mailing list
> >>> > > >> >> > > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> >> > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> >> > >
> >>> > > >> >> > _______________________________________________
> >>> > > >> >> > yt-users mailing list
> >>> > > >> >> > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> >> >
> >>> > > >> >> -------------- next part --------------
> >>> > > >> >> An HTML attachment was scrubbed...
> >>> > > >> >> URL:
> >>> > > >> >> <
> >>> > > >>
> >>> > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160329/e29a03a1/attachment.html <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160329/e29a03a1/attachment.html> <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160329/e29a03a1/attachment.html <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160329/e29a03a1/attachment.html>><http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160329/e29a03a1/attachment.html <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160329/e29a03a1/attachment.html> <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160329/e29a03a1/attachment.html <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160329/e29a03a1/attachment.html>>>
> >>> > > >> >
> >>> > > >> >>
> >>> > > >> >> ------------------------------
> >>> > > >> >>
> >>> > > >> >> Message: 2
> >>> > > >> >> Date: Tue, 29 Mar 2016 08:57:08 -0500
> >>> > > >> >> From: Matthew Turk <matthewturk at gmail.com <mailto:matthewturk at gmail.com> <mailto:matthewturk at gmail.com <mailto:matthewturk at gmail.com>> <mailto:matthewturk at gmail.com <mailto:matthewturk at gmail.com> <mailto:matthewturk at gmail.com <mailto:matthewturk at gmail.com>>>>
> >>> > > >> >> To: Discussion of the yt analysis package
> >>> > > >> >>         <yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>>
> >>> > > >> >> Subject: Re: [yt-users] gadget onto unigrid
> >>> > > >> >> Message-ID:
> >>> > > >> >>
> >>> > > >> >> <CALO3=5HR=zLHujWKgLpqwei_98vBOjpYvQ4m8nnUFR=P098utA at mail.gmail.com <mailto:P098utA at mail.gmail.com> <mailto:P098utA at mail.gmail.com <mailto:P098utA at mail.gmail.com>><mailto:P098utA at mail.gmail.com <mailto:P098utA at mail.gmail.com> <mailto:P098utA at mail.gmail.com <mailto:P098utA at mail.gmail.com>>>>
> >>> > > >> >> Content-Type: text/plain; charset=UTF-8
> >>> > > >> >>
> >>> > > >> >> Hi Carla,
> >>> > > >> >>
> >>> > > >> >> This functionality was recently implemented and is in the development
> >>> > > >> >> version, but not yet in the stable.  We're hoping for a release very
> >>> > > >> >> shortly, but you can also try the dev version if you'd like!
> >>> > > >> >>
> >>> > > >> >> -Matt
> >>> > > >> >>
> >>> > > >> >> On Tue, Mar 29, 2016 at 8:55 AM, Carla Bernhardt
> >>> > > >> >> <carla.j.bernhardt at gmail.com <mailto:carla.j.bernhardt at gmail.com> <mailto:carla.j.bernhardt at gmail.com <mailto:carla.j.bernhardt at gmail.com>> <mailto:carla.j.bernhardt at gmail.com <mailto:carla.j.bernhardt at gmail.com> <mailto:carla.j.bernhardt at gmail.com <mailto:carla.j.bernhardt at gmail.com>>>> wrote:
> >>> > > >> >> > Hi All,
> >>> > > >> >> >
> >>> > > >> >> > A follow-up question: In using arbitrary_grid (but with enzo data),
> >>> > > >> how
> >>> > > >> >> > does
> >>> > > >> >> > one then extract a field of an arbitrary_grid? I tried
> >>> > > >> >> > arbgrid["density"] as
> >>> > > >> >> > I have done with a smoothed_covering_grid object, but it does not
> >>> > > >> work
> >>> > > >> >> > (here
> >>> > > >> >> > is the traceback I got).
> >>> > > >> >> >
> >>> > > >> >> > Thanks,
> >>> > > >> >> > Carla
> >>> > > >> >> >
> >>> > > >> >> > 2016-02-23 17:21 GMT+01:00 Matthew Turk <matthewturk at gmail.com <mailto:matthewturk at gmail.com> <mailto:matthewturk at gmail.com <mailto:matthewturk at gmail.com>> <mailto:matthewturk at gmail.com <mailto:matthewturk at gmail.com> <mailto:matthewturk at gmail.com <mailto:matthewturk at gmail.com>>>>:
> >>> > > >> >> >>
> >>> > > >> >> >> Hi Desika,
> >>> > > >> >> >>
> >>> > > >> >> >> Yup, this can be done reasonably easily using either the
> >>> > > >> >> >> .arbitrary_grid object (which was designed for this) or the
> >>> > > >> interface
> >>> > > >> >> >> to the arbitrary grid that's in the development version, which is
> >>> > > >> >> >> ds.r[ ... ] where the ... is some combination of bounds and steps.
> >>> > > >> >> >>
> >>> > > >> >> >>
> >>> > > >> http://yt-project.org/docs/dev/analyzing/objects.html#arbitrary-grid <http://yt-project.org/docs/dev/analyzing/objects.html#arbitrary-grid> <http://yt-project.org/docs/dev/analyzing/objects.html#arbitrary-grid <http://yt-project.org/docs/dev/analyzing/objects.html#arbitrary-grid>> <http://yt-project.org/docs/dev/analyzing/objects.html#arbitrary-grid <http://yt-project.org/docs/dev/analyzing/objects.html#arbitrary-grid> <http://yt-project.org/docs/dev/analyzing/objects.html#arbitrary-grid <http://yt-project.org/docs/dev/analyzing/objects.html#arbitrary-grid>>>
> >>> > > >> >> >>
> >>> > > >> >> >>
> >>> > > >> >> >>
> >>> > > >>
> >>> > > http://yt-project.org/docs/dev/analyzing/objects.html#slicing-syntax-for-selecting-data <http://yt-project.org/docs/dev/analyzing/objects.html#slicing-syntax-for-selecting-data> <http://yt-project.org/docs/dev/analyzing/objects.html#slicing-syntax-for-selecting-data <http://yt-project.org/docs/dev/analyzing/objects.html#slicing-syntax-for-selecting-data>> <http://yt-project.org/docs/dev/analyzing/objects.html#slicing-syntax-for-selecting-data <http://yt-project.org/docs/dev/analyzing/objects.html#slicing-syntax-for-selecting-data> <http://yt-project.org/docs/dev/analyzing/objects.html#slicing-syntax-for-selecting-data <http://yt-project.org/docs/dev/analyzing/objects.html#slicing-syntax-for-selecting-data>>>
> >>> > > >> >> >>
> >>> > > >> >> >> On Tue, Feb 23, 2016 at 10:18 AM, Desika Narayanan
> >>> > > >> >> >> <desika.narayanan at gmail.com <mailto:desika.narayanan at gmail.com> <mailto:desika.narayanan at gmail.com <mailto:desika.narayanan at gmail.com>> <mailto:desika.narayanan at gmail.com <mailto:desika.narayanan at gmail.com> <mailto:desika.narayanan at gmail.com <mailto:desika.narayanan at gmail.com>>>> wrote:
> >>> > > >> >> >> > Hi All,
> >>> > > >> >> >> >
> >>> > > >> >> >> > Is it possible to deposit the particles from a gadget data set
> >>> > > >> onto a
> >>> > > >> >> >> > uniform grid in yt?  Or, could it be possible to trick the
> >>> > > octree
> >>> > > >> >> >> > deposition
> >>> > > >> >> >> > into doing it by forcing no refinements, but some sort of native
> >>> > > >> grid
> >>> > > >> >> >> > resolution?
> >>> > > >> >> >> >
> >>> > > >> >> >> > thanks,
> >>> > > >> >> >> > desika
> >>> > > >> >> >> >
> >>> > > >> >> >> >
> >>> > > >> >> >> > _______________________________________________
> >>> > > >> >> >> > yt-users mailing list
> >>> > > >> >> >> > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> >> >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> >> >> >
> >>> > > >> >> >> _______________________________________________
> >>> > > >> >> >> yt-users mailing list
> >>> > > >> >> >> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> >> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> >> >
> >>> > > >> >> >
> >>> > > >> >> >
> >>> > > >> >> > _______________________________________________
> >>> > > >> >> > yt-users mailing list
> >>> > > >> >> > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> >> >
> >>> > > >> >>
> >>> > > >> >>
> >>> > > >> >> ------------------------------
> >>> > > >> >>
> >>> > > >> >> Subject: Digest Footer
> >>> > > >> >>
> >>> > > >> >> _______________________________________________
> >>> > > >> >> yt-users mailing list
> >>> > > >> >> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> >>
> >>> > > >> >>
> >>> > > >> >> ------------------------------
> >>> > > >> >>
> >>> > > >> >> End of yt-users Digest, Vol 97, Issue 34
> >>> > > >> >> ****************************************
> >>> > > >> >
> >>> > > >> >
> >>> > > >> >
> >>> > > >> >
> >>> > > >> > --
> >>> > > >> > SK2
> >>> > > >> >
> >>> > > >> > "Claiming that something can move faster than light is a good
> >>> > > >> > conversation-stopper in physics. People edge away from you in cocktail
> >>> > > >> > parties; friends never return phone calls. You just don?t mess with
> >>> > > >> Albert
> >>> > > >> > Einstein."
> >>> > > >> >
> >>> > > >> >
> >>> > > >> > _______________________________________________
> >>> > > >> > yt-users mailing list
> >>> > > >> > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> >
> >>> > > >>
> >>> > > >>
> >>> > > >> ------------------------------
> >>> > > >>
> >>> > > >> Message: 4
> >>> > > >> Date: Wed, 30 Mar 2016 18:01:04 -0400
> >>> > > >> From: Jonah Miller <jonah.maxwell.miller at gmail.com <mailto:jonah.maxwell.miller at gmail.com> <mailto:jonah.maxwell.miller at gmail.com <mailto:jonah.maxwell.miller at gmail.com>> <mailto:jonah.maxwell.miller at gmail.com <mailto:jonah.maxwell.miller at gmail.com> <mailto:jonah.maxwell.miller at gmail.com <mailto:jonah.maxwell.miller at gmail.com>>>>
> >>> > > >> To: yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> Subject: Re: [yt-users] load spherical polar coordinate data with mesh
> >>> > > >>         refinement in HDF5
> >>> > > >> Message-ID: <56FC4CA0.4030403 at gmail.com <mailto:56FC4CA0.4030403 at gmail.com> <mailto:56FC4CA0.4030403 at gmail.com <mailto:56FC4CA0.4030403 at gmail.com>> <mailto:56FC4CA0.4030403 at gmail.com <mailto:56FC4CA0.4030403 at gmail.com> <mailto:56FC4CA0.4030403 at gmail.com <mailto:56FC4CA0.4030403 at gmail.com>>>>
> >>> > > >> Content-Type: text/plain; charset=windows-1252; format=flowed
> >>> > > >>
> >>> > > >> Hi Yanfei,
> >>> > > >>
> >>> > > >> To add to Matt's comment. Here is the documentation for using
> >>> > > >> load_hexahedral_mesh.
> >>> > > >>
> >>> > > >>
> >>> > > http://yt-project.org/doc/examining/loading_data.html#semi-structured-grid-data <http://yt-project.org/doc/examining/loading_data.html#semi-structured-grid-data> <http://yt-project.org/doc/examining/loading_data.html#semi-structured-grid-data <http://yt-project.org/doc/examining/loading_data.html#semi-structured-grid-data>> <http://yt-project.org/doc/examining/loading_data.html#semi-structured-grid-data <http://yt-project.org/doc/examining/loading_data.html#semi-structured-grid-data> <http://yt-project.org/doc/examining/loading_data.html#semi-structured-grid-data <http://yt-project.org/doc/examining/loading_data.html#semi-structured-grid-data>>>
> >>> > > >>
> >>> > > >>
> >>> > > http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_hexahedral_mesh.html <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_hexahedral_mesh.html> <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_hexahedral_mesh.html <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_hexahedral_mesh.html>><http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_hexahedral_mesh.html <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_hexahedral_mesh.html> <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_hexahedral_mesh.html <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_hexahedral_mesh.html>>>
> >>> > > >>
> >>> > > >> Best,
> >>> > > >> Jonah
> >>> > > >>
> >>> > > >> On 16-03-30 05:15 PM, Matthew Turk wrote:
> >>> > > >> > Hi Yanfei,
> >>> > > >> >
> >>> > > >> > This is possible -- but it will also slow some things down.  You can
> >>> > > >> > use the load_hexahedral_mesh function, and there're examples of this.
> >>> > > >> > This takes away some of the optimizations that regular grids can do,
> >>> > > >> > but we're hoping to add them back in shortly.  Like the other
> >>> > > >> > functions it too takes a geometry argument.
> >>> > > >> >
> >>> > > >> > -Matt
> >>> > > >> >
> >>> > > >> > On Wed, Mar 30, 2016 at 2:49 PM, Jiang, Yanfei
> >>> > > >> > <yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu>> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu>>>> wrote:
> >>> > > >> >> Hi Jonah,
> >>> > > >> >>
> >>> > > >> >>     I am able to load the data to yt now using load_amr_grids(). I
> >>> > > >> notice
> >>> > > >> >> that it can also set geometry to spherical. This is great. But to
> >>> > > make
> >>> > > >> life
> >>> > > >> >> more complicate. Is it possible to let yt know that the grid is
> >>> > > >> logarithmic?
> >>> > > >> >> Currently, load_amr_grids() just take left and right edges of each
> >>> > > >> block. I
> >>> > > >> >> guess yt assumes the grid is uniform between left and right edges. Is
> >>> > > >> it
> >>> > > >> >> possible to provide arrays of coordinate values for each cell in each
> >>> > > >> block?
> >>> > > >> >>
> >>> > > >> >> Thanks.
> >>> > > >> >>
> >>> > > >> >> On Tue, Mar 29, 2016 at 6:58 PM, Jonah Miller
> >>> > > >> >> <jonah.maxwell.miller at gmail.com <mailto:jonah.maxwell.miller at gmail.com> <mailto:jonah.maxwell.miller at gmail.com <mailto:jonah.maxwell.miller at gmail.com>> <mailto:jonah.maxwell.miller at gmail.com <mailto:jonah.maxwell.miller at gmail.com> <mailto:jonah.maxwell.miller at gmail.com <mailto:jonah.maxwell.miller at gmail.com>>>> wrote:
> >>> > > >> >>> Hi Yan-Feng,
> >>> > > >> >>>
> >>> > > >> >>> I haven't tried it, but I think there is functionality for this. You
> >>> > > >> can
> >>> > > >> >>> use the load_amr_grids() function which can load amr data in
> >>> > > >> Cartesian,
> >>> > > >> >>> spherical, or polar coordinates. Here's the documentation:
> >>> > > >> >>>
> >>> > > >> >>>
> >>> > > >> >>>
> >>> > > >>
> >>> > > http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array> <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array>> <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array> <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array <http://yt-project.org/doc/examining/generic_array_data.html#loading-numpy-array>>>
> >>> > > >> >>>
> >>> > > >> >>>
> >>> > > >> >>>
> >>> > > >>
> >>> > > http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids> <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids>> <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids> <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids <http://yt-project.org/doc/reference/api/generated/yt.frontends.stream.data_structures.load_amr_grids.html#yt.frontends.stream.data_structures.load_amr_grids>>>
> >>> > > >> >>>
> >>> > > >> >>> Best,
> >>> > > >> >>> Jonah
> >>> > > >> >>>
> >>> > > >> >>> On Tue, Mar 29, 2016, 6:35 PM Jiang, Yanfei <
> >>> > > >> yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu>> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu> <mailto:yanfei.jiang at cfa.harvard.edu <mailto:yanfei.jiang at cfa.harvard.edu>>>>
> >>> > > >> >>> wrote:
> >>> > > >> >>>> Hi,
> >>> > > >> >>>>           I have some data from a new version of Athena
> >>> > > simulations.
> >>> > > >> It is
> >>> > > >> >>>> in spherical polar coordinate with mesh refinement written in HDF5.
> >>> > > >> The data
> >>> > > >> >>>> structure is similar to flash data but not the same. Does anyone
> >>> > > have
> >>> > > >> >>>> suggestions to load such data to yt directly?
> >>> > > >> >>>>
> >>> > > >> >>>> Thank you.
> >>> > > >> >>>> --
> >>> > > >> >>>> Yan-Fei Jiang
> >>> > > >> >>>>
> >>> > > >> >>>> Einstein Fellow
> >>> > > >> >>>> Harvard-Smithsonian Center for Astrophysics
> >>> > > >> >>>> 60 Garden Street, Cambridge MA USA 02138
> >>> > > >> >>>> _______________________________________________
> >>> > > >> >>>> yt-users mailing list
> >>> > > >> >>>> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> >>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> >>>
> >>> > > >> >>> _______________________________________________
> >>> > > >> >>> yt-users mailing list
> >>> > > >> >>> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> >>>
> >>> > > >> >>
> >>> > > >> >>
> >>> > > >> >> --
> >>> > > >> >> Yan-Fei Jiang
> >>> > > >> >>
> >>> > > >> >> Einstein Fellow
> >>> > > >> >> Harvard-Smithsonian Center for Astrophysics
> >>> > > >> >> 60 Garden Street, Cambridge MA USA 02138
> >>> > > >> >>
> >>> > > >> >> _______________________________________________
> >>> > > >> >> yt-users mailing list
> >>> > > >> >> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >> >>
> >>> > > >> > _______________________________________________
> >>> > > >> > yt-users mailing list
> >>> > > >> > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >>
> >>> > > >>
> >>> > > >>
> >>> > > >> ------------------------------
> >>> > > >>
> >>> > > >> Subject: Digest Footer
> >>> > > >>
> >>> > > >> _______________________________________________
> >>> > > >> yt-users mailing list
> >>> > > >> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >>
> >>> > > >>
> >>> > > >> ------------------------------
> >>> > > >>
> >>> > > >> End of yt-users Digest, Vol 97, Issue 37
> >>> > > >> ****************************************
> >>> > > >>
> >>> > > >
> >>> > > >
> >>> > > >
> >>> > > > --
> >>> > > > *SK2*
> >>> > > >
> >>> > > > *"**Claiming that something can move faster than light is a good
> >>> > > > conversation-stopper in physics. People edge away from you in cocktail
> >>> > > > parties; friends never return phone calls. You just don?t mess with
> >>> > > Albert
> >>> > > > Einstein.**"*
> >>> > > >
> >>> > > >
> >>> > > > _______________________________________________
> >>> > > > yt-users mailing list
> >>> > > > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > > >
> >>> > > >
> >>> > > -------------- next part --------------
> >>> > > An HTML attachment was scrubbed...
> >>> > > URL: <
> >>> > > http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160331/b739cfe9/attachment.htm <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160331/b739cfe9/attachment.htm> <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160331/b739cfe9/attachment.htm <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160331/b739cfe9/attachment.htm>><http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160331/b739cfe9/attachment.htm <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160331/b739cfe9/attachment.htm> <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160331/b739cfe9/attachment.htm <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160331/b739cfe9/attachment.htm>>>
> >>> > > >
> >>> > >
> >>> > > ------------------------------
> >>> > >
> >>> > > Subject: Digest Footer
> >>> > >
> >>> > > _______________________________________________
> >>> > > yt-users mailing list
> >>> > > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> > >
> >>> > >
> >>> > > ------------------------------
> >>> > >
> >>> > > End of yt-users Digest, Vol 97, Issue 39
> >>> > > ****************************************
> >>> > >
> >>> >
> >>> >
> >>> >
> >>> > --
> >>> > *SK2*
> >>> >
> >>> > *"**Claiming that something can move faster than light is a good
> >>> > conversation-stopper in physics. People edge away from you in cocktail
> >>> > parties; friends never return phone calls. You just don?t mess with Albert
> >>> > Einstein.**"*
> >>> > -------------- next part --------------
> >>> > An HTML attachment was scrubbed...
> >>> > URL: <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160331/f4f56e5d/attachment.htm <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160331/f4f56e5d/attachment.htm> <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160331/f4f56e5d/attachment.htm <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160331/f4f56e5d/attachment.htm>><http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160331/f4f56e5d/attachment.htm <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160331/f4f56e5d/attachment.htm> <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160331/f4f56e5d/attachment.htm <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160331/f4f56e5d/attachment.htm>>>>
> >>> >
> >>> > ------------------------------
> >>> >
> >>> > Subject: Digest Footer
> >>> >
> >>> > _______________________________________________
> >>> > yt-users mailing list
> >>> > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>>
> >>> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>>
> >>> >
> >>> >
> >>> > ------------------------------
> >>> >
> >>> > End of yt-users Digest, Vol 97, Issue 41
> >>> > ****************************************
> >>> >
> >>> >
> >>> >
> >>> > --
> >>> > SK2
> >>> >
> >>> > "Claiming that something can move faster than light is a good conversation-stopper in physics. People edge away from you in cocktail parties; friends never return phone calls. You just don?t mess with Albert Einstein."
> >>> >
> >>> > _______________________________________________
> >>> > yt-users mailing list
> >>> > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>
> >>> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>
> >>>
> >>> -------------- next part --------------
> >>> An HTML attachment was scrubbed...
> >>> URL: <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160415/0ccad489/attachment.htm <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160415/0ccad489/attachment.htm> <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160415/0ccad489/attachment.htm <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20160415/0ccad489/attachment.htm>>>
> >>>
> >>> ------------------------------
> >>>
> >>> Subject: Digest Footer
> >>>
> >>> _______________________________________________
> >>> yt-users mailing list
> >>> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>
> >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>
> >>>
> >>>
> >>> ------------------------------
> >>>
> >>> End of yt-users Digest, Vol 98, Issue 14
> >>> ****************************************
> >>>
> >>>
> >>>
> >>> --
> >>> SK2
> >>>
> >>> "Claiming that something can move faster than light is a good conversation-stopper in physics. People edge away from you in cocktail parties; friends never return phone calls. You just don?t mess with Albert Einstein."
> >>>
> >>>
> >>>
> >>>
> >>> --
> >>> SK2
> >>>
> >>> "Claiming that something can move faster than light is a good conversation-stopper in physics. People edge away from you in cocktail parties; friends never return phone calls. You just don?t mess with Albert Einstein."
> >>>
> >>> _______________________________________________
> >>> yt-users mailing list
> >>> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>
> >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>
> >>
> >>
> >> _______________________________________________
> >> yt-users mailing list
> >> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>
> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>
> >>
> >>
> >> _______________________________________________
> >> yt-users mailing list
> >> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>
> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>
> >
> >
> > _______________________________________________
> > yt-users mailing list
> > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>
> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>
> >
> >
> > _______________________________________________
> > yt-users mailing list
> > yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org> <mailto:yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>>
> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org> <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>
> -------------- next part --------------
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> 
> ------------------------------
> 
> Subject: Digest Footer
> 
> _______________________________________________
> yt-users mailing list
> yt-users at lists.spacepope.org <mailto:yt-users at lists.spacepope.org>
> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>
> 
> 
> ------------------------------
> 
> End of yt-users Digest, Vol 98, Issue 27
> ****************************************
> 
> 
> 
> -- 
> SK2
> 
> "Claiming that something can move faster than light is a good conversation-stopper in physics. People edge away from you in cocktail parties; friends never return phone calls. You just don’t mess with Albert Einstein."
> 
> _______________________________________________
> yt-users mailing list
> yt-users at lists.spacepope.org
> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org

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