[yt-users] install/compile error
Alexander Heger
alexander.heger at monash.edu
Sun Sep 13 20:10:54 PDT 2015
I know you don't yet quite support prime-time use of python 3.x.
But since this is in progress, I provide some feedback.
When doing a pip3 install yt I get the attached error message.
Best wishes,
Alexander
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Collecting yt
Using cached yt-3.2.1.tar.gz
Installing collected packages: yt
Running setup.py install for yt
Complete output from command /home/alex/Python/bin/python3.5 -c "import setuptools, tokenize;__file__='/tmp/pip-build-hs37_kd7/yt/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-x8j0pxyo-record/install-record.txt --single-version-externally-managed --compile:
non-existing path in 'yt/utilities/spatial': 'yt/utilities/spatial/tests'
running install
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
building extension "yt.analysis_modules.halo_finding.fof.EnzoFOF" sources
building extension "yt.analysis_modules.halo_finding.hop.EnzoHop" sources
building extension "yt.analysis_modules.ppv_cube.ppv_utils" sources
building extension "yt.frontends.artio._artio_caller" sources
building extension "yt.geometry.grid_visitors" sources
building extension "yt.geometry.grid_container" sources
building extension "yt.geometry.oct_container" sources
building extension "yt.geometry.oct_visitors" sources
building extension "yt.geometry.particle_oct_container" sources
building extension "yt.geometry.selection_routines" sources
building extension "yt.geometry.particle_deposit" sources
building extension "yt.geometry.particle_smooth" sources
building extension "yt.geometry.fake_octree" sources
building extension "yt.utilities.spatial.ckdtree" sources
building extension "yt.utilities.spatial._distance_wrap" sources
building extension "yt.utilities.lib.bitarray" sources
building extension "yt.utilities.lib.CICDeposit" sources
building extension "yt.utilities.lib.ContourFinding" sources
building extension "yt.utilities.lib.DepthFirstOctree" sources
building extension "yt.utilities.lib.fortran_reader" sources
building extension "yt.utilities.lib.geometry_utils" sources
building extension "yt.utilities.lib.Interpolators" sources
building extension "yt.utilities.lib.alt_ray_tracers" sources
building extension "yt.utilities.lib.marching_cubes" sources
building extension "yt.utilities.lib.misc_utilities" sources
building extension "yt.utilities.lib.pixelization_routines" sources
building extension "yt.utilities.lib.Octree" sources
building extension "yt.utilities.lib.origami" sources
building extension "yt.utilities.lib.image_utilities" sources
building extension "yt.utilities.lib.PointsInVolume" sources
building extension "yt.utilities.lib.QuadTree" sources
building extension "yt.utilities.lib.RayIntegrators" sources
building extension "yt.utilities.lib.mesh_utilities" sources
building extension "yt.utilities.lib.grid_traversal" sources
building extension "yt.utilities.lib.write_array" sources
building extension "yt.utilities.lib.ragged_arrays" sources
building extension "yt.utilities.lib.amr_kdtools" sources
building extension "yt.utilities.data_point_utilities" sources
building extension "yt.visualization._MPL" sources
building data_files sources
build_src: building npy-pkg config files
running build_py
Error in obtaining current changeset of the Mercurial repository
Current changeset of the Mercurial repository is malformed
creating build/lib.linux-x86_64-3.5
creating build/lib.linux-x86_64-3.5/yt
copying yt/testing.py -> build/lib.linux-x86_64-3.5/yt
copying yt/startup_tasks.py -> build/lib.linux-x86_64-3.5/yt
copying yt/setup.py -> build/lib.linux-x86_64-3.5/yt
copying yt/pmods.py -> build/lib.linux-x86_64-3.5/yt
copying yt/mods.py -> build/lib.linux-x86_64-3.5/yt
copying yt/funcs.py -> build/lib.linux-x86_64-3.5/yt
copying yt/convenience.py -> build/lib.linux-x86_64-3.5/yt
copying yt/config.py -> build/lib.linux-x86_64-3.5/yt
copying yt/arraytypes.py -> build/lib.linux-x86_64-3.5/yt
copying yt/api.py -> build/lib.linux-x86_64-3.5/yt
copying yt/__init__.py -> build/lib.linux-x86_64-3.5/yt
copying yt/__config__.py -> build/lib.linux-x86_64-3.5/yt
creating build/lib.linux-x86_64-3.5/yt/analysis_modules
copying yt/analysis_modules/setup.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules
copying yt/analysis_modules/list_modules.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules
copying yt/analysis_modules/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules
copying yt/analysis_modules/__config__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/absorption_spectrum
copying yt/analysis_modules/absorption_spectrum/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/absorption_spectrum
copying yt/analysis_modules/absorption_spectrum/absorption_spectrum_fit.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/absorption_spectrum
copying yt/analysis_modules/absorption_spectrum/absorption_spectrum.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/absorption_spectrum
copying yt/analysis_modules/absorption_spectrum/absorption_line.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/absorption_spectrum
copying yt/analysis_modules/absorption_spectrum/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/absorption_spectrum
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation
copying yt/analysis_modules/cosmological_observation/setup.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation
copying yt/analysis_modules/cosmological_observation/cosmology_splice.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation
copying yt/analysis_modules/cosmological_observation/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation
copying yt/analysis_modules/cosmological_observation/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation
copying yt/analysis_modules/cosmological_observation/__config__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation/light_cone
copying yt/analysis_modules/cosmological_observation/light_cone/setup.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation/light_cone
copying yt/analysis_modules/cosmological_observation/light_cone/light_cone_projection.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation/light_cone
copying yt/analysis_modules/cosmological_observation/light_cone/light_cone.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation/light_cone
copying yt/analysis_modules/cosmological_observation/light_cone/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation/light_cone
copying yt/analysis_modules/cosmological_observation/light_cone/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation/light_cone
copying yt/analysis_modules/cosmological_observation/light_cone/__config__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation/light_cone
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation/light_ray
copying yt/analysis_modules/cosmological_observation/light_ray/setup.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation/light_ray
copying yt/analysis_modules/cosmological_observation/light_ray/light_ray.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation/light_ray
copying yt/analysis_modules/cosmological_observation/light_ray/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation/light_ray
copying yt/analysis_modules/cosmological_observation/light_ray/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation/light_ray
copying yt/analysis_modules/cosmological_observation/light_ray/__config__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/cosmological_observation/light_ray
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_analysis
copying yt/analysis_modules/halo_analysis/halo_quantities.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_analysis
copying yt/analysis_modules/halo_analysis/halo_object.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_analysis
copying yt/analysis_modules/halo_analysis/halo_finding_methods.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_analysis
copying yt/analysis_modules/halo_analysis/halo_filters.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_analysis
copying yt/analysis_modules/halo_analysis/halo_catalog.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_analysis
copying yt/analysis_modules/halo_analysis/halo_callbacks.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_analysis
copying yt/analysis_modules/halo_analysis/enzofof_merger_tree.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_analysis
copying yt/analysis_modules/halo_analysis/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_analysis
copying yt/analysis_modules/halo_analysis/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_analysis
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_finding
copying yt/analysis_modules/halo_finding/setup.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_finding
copying yt/analysis_modules/halo_finding/halo_objects.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_finding
copying yt/analysis_modules/halo_finding/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_finding
copying yt/analysis_modules/halo_finding/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_finding
copying yt/analysis_modules/halo_finding/__config__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_finding
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_finding/fof
copying yt/analysis_modules/halo_finding/fof/setup.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_finding/fof
copying yt/analysis_modules/halo_finding/fof/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_finding/fof
copying yt/analysis_modules/halo_finding/fof/__config__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_finding/fof
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_finding/hop
copying yt/analysis_modules/halo_finding/hop/setup.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_finding/hop
copying yt/analysis_modules/halo_finding/hop/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_finding/hop
copying yt/analysis_modules/halo_finding/hop/__config__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_finding/hop
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_mass_function
copying yt/analysis_modules/halo_mass_function/setup.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_mass_function
copying yt/analysis_modules/halo_mass_function/halo_mass_function.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_mass_function
copying yt/analysis_modules/halo_mass_function/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_mass_function
copying yt/analysis_modules/halo_mass_function/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_mass_function
copying yt/analysis_modules/halo_mass_function/__config__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_mass_function
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/level_sets
copying yt/analysis_modules/level_sets/setup.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/level_sets
copying yt/analysis_modules/level_sets/contour_finder.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/level_sets
copying yt/analysis_modules/level_sets/clump_validators.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/level_sets
copying yt/analysis_modules/level_sets/clump_tools.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/level_sets
copying yt/analysis_modules/level_sets/clump_info_items.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/level_sets
copying yt/analysis_modules/level_sets/clump_handling.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/level_sets
copying yt/analysis_modules/level_sets/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/level_sets
copying yt/analysis_modules/level_sets/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/level_sets
copying yt/analysis_modules/level_sets/__config__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/level_sets
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/particle_trajectories
copying yt/analysis_modules/particle_trajectories/setup.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/particle_trajectories
copying yt/analysis_modules/particle_trajectories/particle_trajectories.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/particle_trajectories
copying yt/analysis_modules/particle_trajectories/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/particle_trajectories
copying yt/analysis_modules/particle_trajectories/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/particle_trajectories
copying yt/analysis_modules/particle_trajectories/__config__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/particle_trajectories
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/photon_simulator
copying yt/analysis_modules/photon_simulator/spectral_models.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/photon_simulator
copying yt/analysis_modules/photon_simulator/setup.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/photon_simulator
copying yt/analysis_modules/photon_simulator/photon_simulator.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/photon_simulator
copying yt/analysis_modules/photon_simulator/photon_models.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/photon_simulator
copying yt/analysis_modules/photon_simulator/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/photon_simulator
copying yt/analysis_modules/photon_simulator/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/photon_simulator
copying yt/analysis_modules/photon_simulator/__config__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/photon_simulator
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/photon_simulator/tests
copying yt/analysis_modules/photon_simulator/tests/test_cluster.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/photon_simulator/tests
copying yt/analysis_modules/photon_simulator/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/photon_simulator/tests
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/spectral_integrator
copying yt/analysis_modules/spectral_integrator/spectral_frequency_integrator.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/spectral_integrator
copying yt/analysis_modules/spectral_integrator/setup.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/spectral_integrator
copying yt/analysis_modules/spectral_integrator/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/spectral_integrator
copying yt/analysis_modules/spectral_integrator/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/spectral_integrator
copying yt/analysis_modules/spectral_integrator/__config__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/spectral_integrator
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/star_analysis
copying yt/analysis_modules/star_analysis/sfr_spectrum.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/star_analysis
copying yt/analysis_modules/star_analysis/setup.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/star_analysis
copying yt/analysis_modules/star_analysis/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/star_analysis
copying yt/analysis_modules/star_analysis/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/star_analysis
copying yt/analysis_modules/star_analysis/__config__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/star_analysis
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/two_point_functions
copying yt/analysis_modules/two_point_functions/two_point_functions.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/two_point_functions
copying yt/analysis_modules/two_point_functions/setup.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/two_point_functions
copying yt/analysis_modules/two_point_functions/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/two_point_functions
copying yt/analysis_modules/two_point_functions/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/two_point_functions
copying yt/analysis_modules/two_point_functions/__config__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/two_point_functions
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/radmc3d_export
copying yt/analysis_modules/radmc3d_export/RadMC3DInterface.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/radmc3d_export
copying yt/analysis_modules/radmc3d_export/RadMC3DImageUtilities.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/radmc3d_export
copying yt/analysis_modules/radmc3d_export/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/radmc3d_export
copying yt/analysis_modules/radmc3d_export/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/radmc3d_export
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/sunrise_export
copying yt/analysis_modules/sunrise_export/sunrise_exporter.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/sunrise_export
copying yt/analysis_modules/sunrise_export/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/sunrise_export
copying yt/analysis_modules/sunrise_export/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/sunrise_export
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/sunyaev_zeldovich
copying yt/analysis_modules/sunyaev_zeldovich/setup.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/sunyaev_zeldovich
copying yt/analysis_modules/sunyaev_zeldovich/projection.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/sunyaev_zeldovich
copying yt/analysis_modules/sunyaev_zeldovich/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/sunyaev_zeldovich
copying yt/analysis_modules/sunyaev_zeldovich/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/sunyaev_zeldovich
copying yt/analysis_modules/sunyaev_zeldovich/__config__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/sunyaev_zeldovich
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/sunyaev_zeldovich/tests
copying yt/analysis_modules/sunyaev_zeldovich/tests/test_projection.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/sunyaev_zeldovich/tests
copying yt/analysis_modules/sunyaev_zeldovich/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/sunyaev_zeldovich/tests
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/ppv_cube
copying yt/analysis_modules/ppv_cube/setup.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/ppv_cube
copying yt/analysis_modules/ppv_cube/ppv_cube.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/ppv_cube
copying yt/analysis_modules/ppv_cube/api.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/ppv_cube
copying yt/analysis_modules/ppv_cube/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/ppv_cube
copying yt/analysis_modules/ppv_cube/__config__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/ppv_cube
creating build/lib.linux-x86_64-3.5/yt/analysis_modules/ppv_cube/tests
copying yt/analysis_modules/ppv_cube/tests/test_ppv.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/ppv_cube/tests
copying yt/analysis_modules/ppv_cube/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/analysis_modules/ppv_cube/tests
creating build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/unstructured_mesh.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/time_series.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/static_output.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/setup.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/selection_data_containers.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/profiles.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/particle_unions.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/particle_io.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/particle_filters.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/octree_subset.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/image_array.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/grid_patch.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/derived_quantities.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/data_containers.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/construction_data_containers.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/api.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/analyzer_objects.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/__init__.py -> build/lib.linux-x86_64-3.5/yt/data_objects
copying yt/data_objects/__config__.py -> build/lib.linux-x86_64-3.5/yt/data_objects
creating build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_streamlines.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_spheres.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_slice.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_rays.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_projection.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_profiles.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_points.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_pickle.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_particle_filter.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_ortho_rays.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_image_array.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_fluxes.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_extract_regions.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_ellipsoid.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_derived_quantities.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_data_collection.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_cutting_plane.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_covering_grid.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_connected_sets.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_compose.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_chunking.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/test_boolean_regions.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
copying yt/data_objects/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/data_objects/tests
creating build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/vector_operations.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/species_fields.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/setup.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/particle_fields.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/my_plugin_fields.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/magnetic_field.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/local_fields.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/interpolated_fields.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/geometric_fields.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/fluid_vector_fields.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/fluid_fields.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/field_plugin_registry.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/field_info_container.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/field_functions.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/field_exceptions.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/field_detector.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/field_aliases.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/domain_context.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/derived_field.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/cosmology_fields.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/astro_simulations.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/astro_fields.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/api.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/angular_momentum.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/__init__.py -> build/lib.linux-x86_64-3.5/yt/fields
copying yt/fields/__config__.py -> build/lib.linux-x86_64-3.5/yt/fields
creating build/lib.linux-x86_64-3.5/yt/fields/tests
copying yt/fields/tests/test_fields.py -> build/lib.linux-x86_64-3.5/yt/fields/tests
copying yt/fields/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/fields/tests
creating build/lib.linux-x86_64-3.5/yt/extern
copying yt/extern/six.py -> build/lib.linux-x86_64-3.5/yt/extern
copying yt/extern/setup.py -> build/lib.linux-x86_64-3.5/yt/extern
copying yt/extern/rocket.py -> build/lib.linux-x86_64-3.5/yt/extern
copying yt/extern/reprlib32.py -> build/lib.linux-x86_64-3.5/yt/extern
copying yt/extern/pykdtree.py -> build/lib.linux-x86_64-3.5/yt/extern
copying yt/extern/pydot.py -> build/lib.linux-x86_64-3.5/yt/extern
copying yt/extern/progressbar.py -> build/lib.linux-x86_64-3.5/yt/extern
copying yt/extern/peewee.py -> build/lib.linux-x86_64-3.5/yt/extern
copying yt/extern/parameterized.py -> build/lib.linux-x86_64-3.5/yt/extern
copying yt/extern/functools32.py -> build/lib.linux-x86_64-3.5/yt/extern
copying yt/extern/bottle.py -> build/lib.linux-x86_64-3.5/yt/extern
copying yt/extern/_dummy_thread32.py -> build/lib.linux-x86_64-3.5/yt/extern
copying yt/extern/__init__.py -> build/lib.linux-x86_64-3.5/yt/extern
copying yt/extern/__config__.py -> build/lib.linux-x86_64-3.5/yt/extern
creating build/lib.linux-x86_64-3.5/yt/frontends
copying yt/frontends/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends
copying yt/frontends/api.py -> build/lib.linux-x86_64-3.5/yt/frontends
copying yt/frontends/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends
copying yt/frontends/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends
creating build/lib.linux-x86_64-3.5/yt/frontends/art
copying yt/frontends/art/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/art
copying yt/frontends/art/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/art
copying yt/frontends/art/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/art
copying yt/frontends/art/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/art
copying yt/frontends/art/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/art
copying yt/frontends/art/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/art
copying yt/frontends/art/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/art
copying yt/frontends/art/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/art
creating build/lib.linux-x86_64-3.5/yt/frontends/artio
copying yt/frontends/artio/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/artio
copying yt/frontends/artio/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/artio
copying yt/frontends/artio/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/artio
copying yt/frontends/artio/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/artio
copying yt/frontends/artio/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/artio
copying yt/frontends/artio/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/artio
copying yt/frontends/artio/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/artio
copying yt/frontends/artio/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/artio
creating build/lib.linux-x86_64-3.5/yt/frontends/athena
copying yt/frontends/athena/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/athena
copying yt/frontends/athena/misc.py -> build/lib.linux-x86_64-3.5/yt/frontends/athena
copying yt/frontends/athena/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/athena
copying yt/frontends/athena/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/athena
copying yt/frontends/athena/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/athena
copying yt/frontends/athena/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/athena
copying yt/frontends/athena/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/athena
copying yt/frontends/athena/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/athena
copying yt/frontends/athena/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/athena
creating build/lib.linux-x86_64-3.5/yt/frontends/boxlib
copying yt/frontends/boxlib/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/boxlib
copying yt/frontends/boxlib/misc.py -> build/lib.linux-x86_64-3.5/yt/frontends/boxlib
copying yt/frontends/boxlib/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/boxlib
copying yt/frontends/boxlib/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/boxlib
copying yt/frontends/boxlib/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/boxlib
copying yt/frontends/boxlib/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/boxlib
copying yt/frontends/boxlib/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/boxlib
copying yt/frontends/boxlib/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/boxlib
copying yt/frontends/boxlib/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/boxlib
creating build/lib.linux-x86_64-3.5/yt/frontends/chombo
copying yt/frontends/chombo/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/chombo
copying yt/frontends/chombo/misc.py -> build/lib.linux-x86_64-3.5/yt/frontends/chombo
copying yt/frontends/chombo/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/chombo
copying yt/frontends/chombo/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/chombo
copying yt/frontends/chombo/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/chombo
copying yt/frontends/chombo/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/chombo
copying yt/frontends/chombo/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/chombo
copying yt/frontends/chombo/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/chombo
copying yt/frontends/chombo/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/chombo
creating build/lib.linux-x86_64-3.5/yt/frontends/eagle
copying yt/frontends/eagle/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/eagle
copying yt/frontends/eagle/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/eagle
copying yt/frontends/eagle/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/eagle
copying yt/frontends/eagle/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/eagle
copying yt/frontends/eagle/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/eagle
copying yt/frontends/eagle/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/eagle
copying yt/frontends/eagle/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/eagle
copying yt/frontends/eagle/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/eagle
creating build/lib.linux-x86_64-3.5/yt/frontends/enzo
copying yt/frontends/enzo/simulation_handling.py -> build/lib.linux-x86_64-3.5/yt/frontends/enzo
copying yt/frontends/enzo/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/enzo
copying yt/frontends/enzo/misc.py -> build/lib.linux-x86_64-3.5/yt/frontends/enzo
copying yt/frontends/enzo/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/enzo
copying yt/frontends/enzo/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/enzo
copying yt/frontends/enzo/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/enzo
copying yt/frontends/enzo/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/enzo
copying yt/frontends/enzo/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/enzo
copying yt/frontends/enzo/answer_testing_support.py -> build/lib.linux-x86_64-3.5/yt/frontends/enzo
copying yt/frontends/enzo/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/enzo
copying yt/frontends/enzo/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/enzo
creating build/lib.linux-x86_64-3.5/yt/frontends/fits
copying yt/frontends/fits/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/fits
copying yt/frontends/fits/misc.py -> build/lib.linux-x86_64-3.5/yt/frontends/fits
copying yt/frontends/fits/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/fits
copying yt/frontends/fits/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/fits
copying yt/frontends/fits/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/fits
copying yt/frontends/fits/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/fits
copying yt/frontends/fits/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/fits
copying yt/frontends/fits/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/fits
copying yt/frontends/fits/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/fits
creating build/lib.linux-x86_64-3.5/yt/frontends/flash
copying yt/frontends/flash/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/flash
copying yt/frontends/flash/misc.py -> build/lib.linux-x86_64-3.5/yt/frontends/flash
copying yt/frontends/flash/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/flash
copying yt/frontends/flash/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/flash
copying yt/frontends/flash/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/flash
copying yt/frontends/flash/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/flash
copying yt/frontends/flash/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/flash
copying yt/frontends/flash/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/flash
copying yt/frontends/flash/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/flash
creating build/lib.linux-x86_64-3.5/yt/frontends/gadget
copying yt/frontends/gadget/simulation_handling.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget
copying yt/frontends/gadget/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget
copying yt/frontends/gadget/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget
copying yt/frontends/gadget/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget
copying yt/frontends/gadget/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget
copying yt/frontends/gadget/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget
copying yt/frontends/gadget/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget
copying yt/frontends/gadget/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget
copying yt/frontends/gadget/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget
creating build/lib.linux-x86_64-3.5/yt/frontends/gadget_fof
copying yt/frontends/gadget_fof/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget_fof
copying yt/frontends/gadget_fof/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget_fof
copying yt/frontends/gadget_fof/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget_fof
copying yt/frontends/gadget_fof/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget_fof
copying yt/frontends/gadget_fof/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget_fof
copying yt/frontends/gadget_fof/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget_fof
copying yt/frontends/gadget_fof/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget_fof
creating build/lib.linux-x86_64-3.5/yt/frontends/gdf
copying yt/frontends/gdf/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/gdf
copying yt/frontends/gdf/misc.py -> build/lib.linux-x86_64-3.5/yt/frontends/gdf
copying yt/frontends/gdf/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/gdf
copying yt/frontends/gdf/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/gdf
copying yt/frontends/gdf/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/gdf
copying yt/frontends/gdf/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/gdf
copying yt/frontends/gdf/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/gdf
copying yt/frontends/gdf/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/gdf
copying yt/frontends/gdf/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/gdf
creating build/lib.linux-x86_64-3.5/yt/frontends/halo_catalog
copying yt/frontends/halo_catalog/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/halo_catalog
copying yt/frontends/halo_catalog/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/halo_catalog
copying yt/frontends/halo_catalog/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/halo_catalog
copying yt/frontends/halo_catalog/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/halo_catalog
copying yt/frontends/halo_catalog/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/halo_catalog
copying yt/frontends/halo_catalog/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/halo_catalog
copying yt/frontends/halo_catalog/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/halo_catalog
creating build/lib.linux-x86_64-3.5/yt/frontends/http_stream
copying yt/frontends/http_stream/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/http_stream
copying yt/frontends/http_stream/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/http_stream
copying yt/frontends/http_stream/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/http_stream
copying yt/frontends/http_stream/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/http_stream
copying yt/frontends/http_stream/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/http_stream
copying yt/frontends/http_stream/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/http_stream
creating build/lib.linux-x86_64-3.5/yt/frontends/moab
copying yt/frontends/moab/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/moab
copying yt/frontends/moab/misc.py -> build/lib.linux-x86_64-3.5/yt/frontends/moab
copying yt/frontends/moab/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/moab
copying yt/frontends/moab/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/moab
copying yt/frontends/moab/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/moab
copying yt/frontends/moab/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/moab
copying yt/frontends/moab/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/moab
copying yt/frontends/moab/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/moab
copying yt/frontends/moab/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/moab
creating build/lib.linux-x86_64-3.5/yt/frontends/owls
copying yt/frontends/owls/simulation_handling.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls
copying yt/frontends/owls/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls
copying yt/frontends/owls/owls_ion_tables.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls
copying yt/frontends/owls/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls
copying yt/frontends/owls/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls
copying yt/frontends/owls/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls
copying yt/frontends/owls/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls
copying yt/frontends/owls/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls
copying yt/frontends/owls/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls
copying yt/frontends/owls/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls
creating build/lib.linux-x86_64-3.5/yt/frontends/owls_subfind
copying yt/frontends/owls_subfind/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls_subfind
copying yt/frontends/owls_subfind/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls_subfind
copying yt/frontends/owls_subfind/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls_subfind
copying yt/frontends/owls_subfind/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls_subfind
copying yt/frontends/owls_subfind/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls_subfind
copying yt/frontends/owls_subfind/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls_subfind
copying yt/frontends/owls_subfind/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls_subfind
creating build/lib.linux-x86_64-3.5/yt/frontends/ramses
copying yt/frontends/ramses/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/ramses
copying yt/frontends/ramses/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/ramses
copying yt/frontends/ramses/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/ramses
copying yt/frontends/ramses/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/ramses
copying yt/frontends/ramses/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/ramses
copying yt/frontends/ramses/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/ramses
copying yt/frontends/ramses/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/ramses
copying yt/frontends/ramses/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/ramses
creating build/lib.linux-x86_64-3.5/yt/frontends/rockstar
copying yt/frontends/rockstar/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/rockstar
copying yt/frontends/rockstar/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/rockstar
copying yt/frontends/rockstar/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/rockstar
copying yt/frontends/rockstar/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/rockstar
copying yt/frontends/rockstar/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/rockstar
copying yt/frontends/rockstar/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/rockstar
copying yt/frontends/rockstar/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/rockstar
copying yt/frontends/rockstar/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/rockstar
creating build/lib.linux-x86_64-3.5/yt/frontends/sdf
copying yt/frontends/sdf/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/sdf
copying yt/frontends/sdf/misc.py -> build/lib.linux-x86_64-3.5/yt/frontends/sdf
copying yt/frontends/sdf/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/sdf
copying yt/frontends/sdf/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/sdf
copying yt/frontends/sdf/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/sdf
copying yt/frontends/sdf/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/sdf
copying yt/frontends/sdf/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/sdf
copying yt/frontends/sdf/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/sdf
copying yt/frontends/sdf/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/sdf
creating build/lib.linux-x86_64-3.5/yt/frontends/sph
copying yt/frontends/sph/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/sph
copying yt/frontends/sph/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/sph
copying yt/frontends/sph/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/sph
copying yt/frontends/sph/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/sph
copying yt/frontends/sph/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/sph
copying yt/frontends/sph/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/sph
creating build/lib.linux-x86_64-3.5/yt/frontends/stream
copying yt/frontends/stream/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/stream
copying yt/frontends/stream/misc.py -> build/lib.linux-x86_64-3.5/yt/frontends/stream
copying yt/frontends/stream/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/stream
copying yt/frontends/stream/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/stream
copying yt/frontends/stream/definitions.py -> build/lib.linux-x86_64-3.5/yt/frontends/stream
copying yt/frontends/stream/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/stream
copying yt/frontends/stream/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/stream
copying yt/frontends/stream/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/stream
copying yt/frontends/stream/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/stream
creating build/lib.linux-x86_64-3.5/yt/frontends/tipsy
copying yt/frontends/tipsy/setup.py -> build/lib.linux-x86_64-3.5/yt/frontends/tipsy
copying yt/frontends/tipsy/io.py -> build/lib.linux-x86_64-3.5/yt/frontends/tipsy
copying yt/frontends/tipsy/fields.py -> build/lib.linux-x86_64-3.5/yt/frontends/tipsy
copying yt/frontends/tipsy/data_structures.py -> build/lib.linux-x86_64-3.5/yt/frontends/tipsy
copying yt/frontends/tipsy/api.py -> build/lib.linux-x86_64-3.5/yt/frontends/tipsy
copying yt/frontends/tipsy/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/tipsy
copying yt/frontends/tipsy/__config__.py -> build/lib.linux-x86_64-3.5/yt/frontends/tipsy
creating build/lib.linux-x86_64-3.5/yt/frontends/art/tests
copying yt/frontends/art/tests/test_outputs.py -> build/lib.linux-x86_64-3.5/yt/frontends/art/tests
copying yt/frontends/art/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/art/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/artio/tests
copying yt/frontends/artio/tests/test_outputs.py -> build/lib.linux-x86_64-3.5/yt/frontends/artio/tests
copying yt/frontends/artio/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/artio/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/athena/tests
copying yt/frontends/athena/tests/test_outputs.py -> build/lib.linux-x86_64-3.5/yt/frontends/athena/tests
copying yt/frontends/athena/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/athena/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/boxlib/tests
copying yt/frontends/boxlib/tests/test_orion.py -> build/lib.linux-x86_64-3.5/yt/frontends/boxlib/tests
copying yt/frontends/boxlib/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/boxlib/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/chombo/tests
copying yt/frontends/chombo/tests/test_outputs.py -> build/lib.linux-x86_64-3.5/yt/frontends/chombo/tests
copying yt/frontends/chombo/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/chombo/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/eagle/tests
copying yt/frontends/eagle/tests/test_outputs.py -> build/lib.linux-x86_64-3.5/yt/frontends/eagle/tests
copying yt/frontends/eagle/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/eagle/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/enzo/tests
copying yt/frontends/enzo/tests/test_outputs.py -> build/lib.linux-x86_64-3.5/yt/frontends/enzo/tests
copying yt/frontends/enzo/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/enzo/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/fits/tests
copying yt/frontends/fits/tests/test_outputs.py -> build/lib.linux-x86_64-3.5/yt/frontends/fits/tests
copying yt/frontends/fits/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/fits/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/flash/tests
copying yt/frontends/flash/tests/test_outputs.py -> build/lib.linux-x86_64-3.5/yt/frontends/flash/tests
copying yt/frontends/flash/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/flash/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/gadget/tests
copying yt/frontends/gadget/tests/test_outputs.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget/tests
copying yt/frontends/gadget/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/gadget_fof/tests
copying yt/frontends/gadget_fof/tests/test_outputs.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget_fof/tests
copying yt/frontends/gadget_fof/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/gadget_fof/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/moab/tests
copying yt/frontends/moab/tests/test_c5.py -> build/lib.linux-x86_64-3.5/yt/frontends/moab/tests
copying yt/frontends/moab/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/moab/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/owls/tests
copying yt/frontends/owls/tests/test_outputs.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls/tests
copying yt/frontends/owls/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/owls_subfind/tests
copying yt/frontends/owls_subfind/tests/test_outputs.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls_subfind/tests
copying yt/frontends/owls_subfind/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/owls_subfind/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/ramses/tests
copying yt/frontends/ramses/tests/test_outputs.py -> build/lib.linux-x86_64-3.5/yt/frontends/ramses/tests
copying yt/frontends/ramses/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/ramses/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/rockstar/tests
copying yt/frontends/rockstar/tests/test_outputs.py -> build/lib.linux-x86_64-3.5/yt/frontends/rockstar/tests
copying yt/frontends/rockstar/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/rockstar/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/stream/tests
copying yt/frontends/stream/tests/test_update_data.py -> build/lib.linux-x86_64-3.5/yt/frontends/stream/tests
copying yt/frontends/stream/tests/test_stream_particles.py -> build/lib.linux-x86_64-3.5/yt/frontends/stream/tests
copying yt/frontends/stream/tests/test_stream_hexahedral.py -> build/lib.linux-x86_64-3.5/yt/frontends/stream/tests
copying yt/frontends/stream/tests/test_stream_amrgrids.py -> build/lib.linux-x86_64-3.5/yt/frontends/stream/tests
copying yt/frontends/stream/tests/test_outputs.py -> build/lib.linux-x86_64-3.5/yt/frontends/stream/tests
copying yt/frontends/stream/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/stream/tests
creating build/lib.linux-x86_64-3.5/yt/frontends/tipsy/tests
copying yt/frontends/tipsy/tests/test_outputs.py -> build/lib.linux-x86_64-3.5/yt/frontends/tipsy/tests
copying yt/frontends/tipsy/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/frontends/tipsy/tests
creating build/lib.linux-x86_64-3.5/yt/geometry
copying yt/geometry/unstructured_mesh_handler.py -> build/lib.linux-x86_64-3.5/yt/geometry
copying yt/geometry/setup.py -> build/lib.linux-x86_64-3.5/yt/geometry
copying yt/geometry/particle_geometry_handler.py -> build/lib.linux-x86_64-3.5/yt/geometry
copying yt/geometry/oct_geometry_handler.py -> build/lib.linux-x86_64-3.5/yt/geometry
copying yt/geometry/object_finding_mixin.py -> build/lib.linux-x86_64-3.5/yt/geometry
copying yt/geometry/grid_geometry_handler.py -> build/lib.linux-x86_64-3.5/yt/geometry
copying yt/geometry/geometry_handler.py -> build/lib.linux-x86_64-3.5/yt/geometry
copying yt/geometry/api.py -> build/lib.linux-x86_64-3.5/yt/geometry
copying yt/geometry/__init__.py -> build/lib.linux-x86_64-3.5/yt/geometry
copying yt/geometry/__config__.py -> build/lib.linux-x86_64-3.5/yt/geometry
creating build/lib.linux-x86_64-3.5/yt/geometry/coordinates
copying yt/geometry/coordinates/spherical_coordinates.py -> build/lib.linux-x86_64-3.5/yt/geometry/coordinates
copying yt/geometry/coordinates/spec_cube_coordinates.py -> build/lib.linux-x86_64-3.5/yt/geometry/coordinates
copying yt/geometry/coordinates/polar_coordinates.py -> build/lib.linux-x86_64-3.5/yt/geometry/coordinates
copying yt/geometry/coordinates/geographic_coordinates.py -> build/lib.linux-x86_64-3.5/yt/geometry/coordinates
copying yt/geometry/coordinates/cylindrical_coordinates.py -> build/lib.linux-x86_64-3.5/yt/geometry/coordinates
copying yt/geometry/coordinates/coordinate_handler.py -> build/lib.linux-x86_64-3.5/yt/geometry/coordinates
copying yt/geometry/coordinates/cartesian_coordinates.py -> build/lib.linux-x86_64-3.5/yt/geometry/coordinates
copying yt/geometry/coordinates/api.py -> build/lib.linux-x86_64-3.5/yt/geometry/coordinates
copying yt/geometry/coordinates/__init__.py -> build/lib.linux-x86_64-3.5/yt/geometry/coordinates
creating build/lib.linux-x86_64-3.5/yt/gui
copying yt/gui/setup.py -> build/lib.linux-x86_64-3.5/yt/gui
copying yt/gui/__init__.py -> build/lib.linux-x86_64-3.5/yt/gui
copying yt/gui/__config__.py -> build/lib.linux-x86_64-3.5/yt/gui
creating build/lib.linux-x86_64-3.5/yt/gui/reason
copying yt/gui/reason/widget_store.py -> build/lib.linux-x86_64-3.5/yt/gui/reason
copying yt/gui/reason/widget_builders.py -> build/lib.linux-x86_64-3.5/yt/gui/reason
copying yt/gui/reason/utils.py -> build/lib.linux-x86_64-3.5/yt/gui/reason
copying yt/gui/reason/setup.py -> build/lib.linux-x86_64-3.5/yt/gui/reason
copying yt/gui/reason/pyro_queue.py -> build/lib.linux-x86_64-3.5/yt/gui/reason
copying yt/gui/reason/pannable_map.py -> build/lib.linux-x86_64-3.5/yt/gui/reason
copying yt/gui/reason/http_repl.py -> build/lib.linux-x86_64-3.5/yt/gui/reason
copying yt/gui/reason/extdirect_router.py -> build/lib.linux-x86_64-3.5/yt/gui/reason
copying yt/gui/reason/extdirect_repl.py -> build/lib.linux-x86_64-3.5/yt/gui/reason
copying yt/gui/reason/bottle_mods.py -> build/lib.linux-x86_64-3.5/yt/gui/reason
copying yt/gui/reason/basic_repl.py -> build/lib.linux-x86_64-3.5/yt/gui/reason
copying yt/gui/reason/__init__.py -> build/lib.linux-x86_64-3.5/yt/gui/reason
copying yt/gui/reason/__config__.py -> build/lib.linux-x86_64-3.5/yt/gui/reason
creating build/lib.linux-x86_64-3.5/yt/units
copying yt/units/yt_array.py -> build/lib.linux-x86_64-3.5/yt/units
copying yt/units/unit_symbols.py -> build/lib.linux-x86_64-3.5/yt/units
copying yt/units/unit_registry.py -> build/lib.linux-x86_64-3.5/yt/units
copying yt/units/unit_object.py -> build/lib.linux-x86_64-3.5/yt/units
copying yt/units/unit_lookup_table.py -> build/lib.linux-x86_64-3.5/yt/units
copying yt/units/setup.py -> build/lib.linux-x86_64-3.5/yt/units
copying yt/units/equivalencies.py -> build/lib.linux-x86_64-3.5/yt/units
copying yt/units/dimensions.py -> build/lib.linux-x86_64-3.5/yt/units
copying yt/units/__init__.py -> build/lib.linux-x86_64-3.5/yt/units
copying yt/units/__config__.py -> build/lib.linux-x86_64-3.5/yt/units
creating build/lib.linux-x86_64-3.5/yt/units/tests
copying yt/units/tests/test_ytarray.py -> build/lib.linux-x86_64-3.5/yt/units/tests
copying yt/units/tests/test_units.py -> build/lib.linux-x86_64-3.5/yt/units/tests
copying yt/units/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/units/tests
creating build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/setup.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/sdf.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/rpdb.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/png_writer.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/physical_ratios.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/physical_constants.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/periodic_table.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/performance_counters.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/particle_generator.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/parameter_file_storage.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/orientation.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/operator_registry.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/on_demand_imports.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/minimal_representation.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/math_utils.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/logger.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/lodgeit.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/linear_interpolators.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/io_handler.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/initial_conditions.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/hierarchy_inspection.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/fortran_utils.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/flagging_methods.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/fits_image.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/file_handler.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/exceptions.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/definitions.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/decompose.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/cosmology.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/command_line.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/chemical_formulas.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/api.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/__init__.py -> build/lib.linux-x86_64-3.5/yt/utilities
copying yt/utilities/__config__.py -> build/lib.linux-x86_64-3.5/yt/utilities
creating build/lib.linux-x86_64-3.5/yt/utilities/amr_kdtree
copying yt/utilities/amr_kdtree/api.py -> build/lib.linux-x86_64-3.5/yt/utilities/amr_kdtree
copying yt/utilities/amr_kdtree/amr_kdtree.py -> build/lib.linux-x86_64-3.5/yt/utilities/amr_kdtree
copying yt/utilities/amr_kdtree/amr_kdtools.py -> build/lib.linux-x86_64-3.5/yt/utilities/amr_kdtree
copying yt/utilities/amr_kdtree/__init__.py -> build/lib.linux-x86_64-3.5/yt/utilities/amr_kdtree
creating build/lib.linux-x86_64-3.5/yt/utilities/poster
copying yt/utilities/poster/streaminghttp.py -> build/lib.linux-x86_64-3.5/yt/utilities/poster
copying yt/utilities/poster/encode.py -> build/lib.linux-x86_64-3.5/yt/utilities/poster
copying yt/utilities/poster/__init__.py -> build/lib.linux-x86_64-3.5/yt/utilities/poster
creating build/lib.linux-x86_64-3.5/yt/utilities/answer_testing
copying yt/utilities/answer_testing/xunit.py -> build/lib.linux-x86_64-3.5/yt/utilities/answer_testing
copying yt/utilities/answer_testing/setup.py -> build/lib.linux-x86_64-3.5/yt/utilities/answer_testing
copying yt/utilities/answer_testing/runner.py -> build/lib.linux-x86_64-3.5/yt/utilities/answer_testing
copying yt/utilities/answer_testing/run_tests.py -> build/lib.linux-x86_64-3.5/yt/utilities/answer_testing
copying yt/utilities/answer_testing/particle_tests.py -> build/lib.linux-x86_64-3.5/yt/utilities/answer_testing
copying yt/utilities/answer_testing/output_tests.py -> build/lib.linux-x86_64-3.5/yt/utilities/answer_testing
copying yt/utilities/answer_testing/level_sets_tests.py -> build/lib.linux-x86_64-3.5/yt/utilities/answer_testing
copying yt/utilities/answer_testing/hydro_tests.py -> build/lib.linux-x86_64-3.5/yt/utilities/answer_testing
copying yt/utilities/answer_testing/halo_tests.py -> build/lib.linux-x86_64-3.5/yt/utilities/answer_testing
copying yt/utilities/answer_testing/framework.py -> build/lib.linux-x86_64-3.5/yt/utilities/answer_testing
copying yt/utilities/answer_testing/default_tests.py -> build/lib.linux-x86_64-3.5/yt/utilities/answer_testing
copying yt/utilities/answer_testing/boolean_region_tests.py -> build/lib.linux-x86_64-3.5/yt/utilities/answer_testing
copying yt/utilities/answer_testing/api.py -> build/lib.linux-x86_64-3.5/yt/utilities/answer_testing
copying yt/utilities/answer_testing/__init__.py -> build/lib.linux-x86_64-3.5/yt/utilities/answer_testing
copying yt/utilities/answer_testing/__config__.py -> build/lib.linux-x86_64-3.5/yt/utilities/answer_testing
creating build/lib.linux-x86_64-3.5/yt/utilities/spatial
copying yt/utilities/spatial/setupscons.py -> build/lib.linux-x86_64-3.5/yt/utilities/spatial
copying yt/utilities/spatial/setup.py -> build/lib.linux-x86_64-3.5/yt/utilities/spatial
copying yt/utilities/spatial/kdtree.py -> build/lib.linux-x86_64-3.5/yt/utilities/spatial
copying yt/utilities/spatial/distance.py -> build/lib.linux-x86_64-3.5/yt/utilities/spatial
copying yt/utilities/spatial/__init__.py -> build/lib.linux-x86_64-3.5/yt/utilities/spatial
creating build/lib.linux-x86_64-3.5/yt/utilities/grid_data_format
copying yt/utilities/grid_data_format/writer.py -> build/lib.linux-x86_64-3.5/yt/utilities/grid_data_format
copying yt/utilities/grid_data_format/setup.py -> build/lib.linux-x86_64-3.5/yt/utilities/grid_data_format
copying yt/utilities/grid_data_format/__init__.py -> build/lib.linux-x86_64-3.5/yt/utilities/grid_data_format
copying yt/utilities/grid_data_format/__config__.py -> build/lib.linux-x86_64-3.5/yt/utilities/grid_data_format
creating build/lib.linux-x86_64-3.5/yt/utilities/grid_data_format/conversion
copying yt/utilities/grid_data_format/conversion/setup.py -> build/lib.linux-x86_64-3.5/yt/utilities/grid_data_format/conversion
copying yt/utilities/grid_data_format/conversion/conversion_athena.py -> build/lib.linux-x86_64-3.5/yt/utilities/grid_data_format/conversion
copying yt/utilities/grid_data_format/conversion/conversion_abc.py -> build/lib.linux-x86_64-3.5/yt/utilities/grid_data_format/conversion
copying yt/utilities/grid_data_format/conversion/__init__.py -> build/lib.linux-x86_64-3.5/yt/utilities/grid_data_format/conversion
copying yt/utilities/grid_data_format/conversion/__config__.py -> build/lib.linux-x86_64-3.5/yt/utilities/grid_data_format/conversion
creating build/lib.linux-x86_64-3.5/yt/utilities/grid_data_format/tests
copying yt/utilities/grid_data_format/tests/test_writer.py -> build/lib.linux-x86_64-3.5/yt/utilities/grid_data_format/tests
copying yt/utilities/grid_data_format/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/utilities/grid_data_format/tests
creating build/lib.linux-x86_64-3.5/yt/utilities/parallel_tools
copying yt/utilities/parallel_tools/task_queue.py -> build/lib.linux-x86_64-3.5/yt/utilities/parallel_tools
copying yt/utilities/parallel_tools/parallel_analysis_interface.py -> build/lib.linux-x86_64-3.5/yt/utilities/parallel_tools
copying yt/utilities/parallel_tools/io_runner.py -> build/lib.linux-x86_64-3.5/yt/utilities/parallel_tools
copying yt/utilities/parallel_tools/controller_system.py -> build/lib.linux-x86_64-3.5/yt/utilities/parallel_tools
copying yt/utilities/parallel_tools/__init__.py -> build/lib.linux-x86_64-3.5/yt/utilities/parallel_tools
creating build/lib.linux-x86_64-3.5/yt/utilities/lib
copying yt/utilities/lib/setup.py -> build/lib.linux-x86_64-3.5/yt/utilities/lib
copying yt/utilities/lib/api.py -> build/lib.linux-x86_64-3.5/yt/utilities/lib
copying yt/utilities/lib/__init__.py -> build/lib.linux-x86_64-3.5/yt/utilities/lib
copying yt/utilities/lib/__config__.py -> build/lib.linux-x86_64-3.5/yt/utilities/lib
creating build/lib.linux-x86_64-3.5/yt/utilities/lib/tests
copying yt/utilities/lib/tests/test_sample.py -> build/lib.linux-x86_64-3.5/yt/utilities/lib/tests
copying yt/utilities/lib/tests/test_ragged_arrays.py -> build/lib.linux-x86_64-3.5/yt/utilities/lib/tests
copying yt/utilities/lib/tests/test_geometry_utils.py -> build/lib.linux-x86_64-3.5/yt/utilities/lib/tests
copying yt/utilities/lib/tests/test_fill_region.py -> build/lib.linux-x86_64-3.5/yt/utilities/lib/tests
copying yt/utilities/lib/tests/test_bitarray.py -> build/lib.linux-x86_64-3.5/yt/utilities/lib/tests
copying yt/utilities/lib/tests/test_alt_ray_tracers.py -> build/lib.linux-x86_64-3.5/yt/utilities/lib/tests
copying yt/utilities/lib/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/utilities/lib/tests
creating build/lib.linux-x86_64-3.5/yt/utilities/tests
copying yt/utilities/tests/test_selectors.py -> build/lib.linux-x86_64-3.5/yt/utilities/tests
copying yt/utilities/tests/test_periodicity.py -> build/lib.linux-x86_64-3.5/yt/utilities/tests
copying yt/utilities/tests/test_periodic_table.py -> build/lib.linux-x86_64-3.5/yt/utilities/tests
copying yt/utilities/tests/test_particle_generator.py -> build/lib.linux-x86_64-3.5/yt/utilities/tests
copying yt/utilities/tests/test_minimal_representation.py -> build/lib.linux-x86_64-3.5/yt/utilities/tests
copying yt/utilities/tests/test_kdtrees.py -> build/lib.linux-x86_64-3.5/yt/utilities/tests
copying yt/utilities/tests/test_interpolators.py -> build/lib.linux-x86_64-3.5/yt/utilities/tests
copying yt/utilities/tests/test_hierarchy_inspection.py -> build/lib.linux-x86_64-3.5/yt/utilities/tests
copying yt/utilities/tests/test_flagging_methods.py -> build/lib.linux-x86_64-3.5/yt/utilities/tests
copying yt/utilities/tests/test_fits_image.py -> build/lib.linux-x86_64-3.5/yt/utilities/tests
copying yt/utilities/tests/test_decompose.py -> build/lib.linux-x86_64-3.5/yt/utilities/tests
copying yt/utilities/tests/test_cosmology.py -> build/lib.linux-x86_64-3.5/yt/utilities/tests
copying yt/utilities/tests/test_coordinate_conversions.py -> build/lib.linux-x86_64-3.5/yt/utilities/tests
copying yt/utilities/tests/test_chemical_formulas.py -> build/lib.linux-x86_64-3.5/yt/utilities/tests
copying yt/utilities/tests/test_amr_kdtree.py -> build/lib.linux-x86_64-3.5/yt/utilities/tests
copying yt/utilities/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/utilities/tests
creating build/lib.linux-x86_64-3.5/yt/utilities/pyparselibconfig
copying yt/utilities/pyparselibconfig/libconfig.py -> build/lib.linux-x86_64-3.5/yt/utilities/pyparselibconfig
copying yt/utilities/pyparselibconfig/api.py -> build/lib.linux-x86_64-3.5/yt/utilities/pyparselibconfig
copying yt/utilities/pyparselibconfig/__init__.py -> build/lib.linux-x86_64-3.5/yt/utilities/pyparselibconfig
creating build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/tick_locators.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/streamlines.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/setup.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/profile_plotter.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/plot_window.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/plot_modifications.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/plot_container.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/particle_plots.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/image_writer.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/fixed_resolution_filters.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/fixed_resolution.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/eps_writer.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/easy_plots.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/color_maps.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/base_plot_types.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/api.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/_mpl_imports.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/_colormap_data.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/__init__.py -> build/lib.linux-x86_64-3.5/yt/visualization
copying yt/visualization/__config__.py -> build/lib.linux-x86_64-3.5/yt/visualization
creating build/lib.linux-x86_64-3.5/yt/visualization/image_panner
copying yt/visualization/image_panner/vm_panner.py -> build/lib.linux-x86_64-3.5/yt/visualization/image_panner
copying yt/visualization/image_panner/setup.py -> build/lib.linux-x86_64-3.5/yt/visualization/image_panner
copying yt/visualization/image_panner/pan_and_scan_widget.py -> build/lib.linux-x86_64-3.5/yt/visualization/image_panner
copying yt/visualization/image_panner/api.py -> build/lib.linux-x86_64-3.5/yt/visualization/image_panner
copying yt/visualization/image_panner/__init__.py -> build/lib.linux-x86_64-3.5/yt/visualization/image_panner
copying yt/visualization/image_panner/__config__.py -> build/lib.linux-x86_64-3.5/yt/visualization/image_panner
creating build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering
copying yt/visualization/volume_rendering/UBVRI.py -> build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering
copying yt/visualization/volume_rendering/transfer_functions.py -> build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering
copying yt/visualization/volume_rendering/transfer_function_helper.py -> build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering
copying yt/visualization/volume_rendering/setup.py -> build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering
copying yt/visualization/volume_rendering/multi_texture.py -> build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering
copying yt/visualization/volume_rendering/image_handling.py -> build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering
copying yt/visualization/volume_rendering/CUDARayCast.py -> build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering
copying yt/visualization/volume_rendering/create_spline.py -> build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering
copying yt/visualization/volume_rendering/camera_path.py -> build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering
copying yt/visualization/volume_rendering/camera.py -> build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering
copying yt/visualization/volume_rendering/blenders.py -> build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering
copying yt/visualization/volume_rendering/api.py -> build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering
copying yt/visualization/volume_rendering/__init__.py -> build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering
copying yt/visualization/volume_rendering/__config__.py -> build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering
creating build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering/tests
copying yt/visualization/volume_rendering/tests/test_vr_cameras.py -> build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering/tests
copying yt/visualization/volume_rendering/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/visualization/volume_rendering/tests
creating build/lib.linux-x86_64-3.5/yt/visualization/tests
copying yt/visualization/tests/test_splat.py -> build/lib.linux-x86_64-3.5/yt/visualization/tests
copying yt/visualization/tests/test_profile_plots.py -> build/lib.linux-x86_64-3.5/yt/visualization/tests
copying yt/visualization/tests/test_plotwindow.py -> build/lib.linux-x86_64-3.5/yt/visualization/tests
copying yt/visualization/tests/test_particle_plot.py -> build/lib.linux-x86_64-3.5/yt/visualization/tests
copying yt/visualization/tests/test_offaxisprojection.py -> build/lib.linux-x86_64-3.5/yt/visualization/tests
copying yt/visualization/tests/test_filters.py -> build/lib.linux-x86_64-3.5/yt/visualization/tests
copying yt/visualization/tests/test_export_frb.py -> build/lib.linux-x86_64-3.5/yt/visualization/tests
copying yt/visualization/tests/test_callbacks.py -> build/lib.linux-x86_64-3.5/yt/visualization/tests
copying yt/visualization/tests/__init__.py -> build/lib.linux-x86_64-3.5/yt/visualization/tests
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
building 'yt.analysis_modules.halo_finding.fof.EnzoFOF' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-3.5
creating build/temp.linux-x86_64-3.5/yt
creating build/temp.linux-x86_64-3.5/yt/analysis_modules
creating build/temp.linux-x86_64-3.5/yt/analysis_modules/halo_finding
creating build/temp.linux-x86_64-3.5/yt/analysis_modules/halo_finding/fof
compile options: '-I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: yt/analysis_modules/halo_finding/fof/kd.c
yt/analysis_modules/halo_finding/fof/kd.c: In function ‘kdBuildTreeFoF’:
yt/analysis_modules/halo_finding/fof/kd.c:210:18: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
int l,n,i,d,m,j,diff;
^
gcc: yt/analysis_modules/halo_finding/fof/EnzoFOF.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from yt/analysis_modules/halo_finding/fof/EnzoFOF.c:22:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
yt/analysis_modules/halo_finding/fof/EnzoFOF.c: In function ‘Py_EnzoFOF’:
yt/analysis_modules/halo_finding/fof/EnzoFOF.c:80:14: warning: unused variable ‘j’ [-Wunused-variable]
int nBucket,j;
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/yt/analysis_modules/halo_finding/fof/EnzoFOF.o build/temp.linux-x86_64-3.5/yt/analysis_modules/halo_finding/fof/kd.o -lm -o build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_finding/fof/EnzoFOF.cpython-35m-x86_64-linux-gnu.so
building 'yt.analysis_modules.halo_finding.hop.EnzoHop' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-3.5/yt/analysis_modules/halo_finding/hop
compile options: '-I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: yt/analysis_modules/halo_finding/hop/hop_kd.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from yt/analysis_modules/halo_finding/hop/kd.h:22,
from yt/analysis_modules/halo_finding/hop/hop_kd.c:22:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from yt/analysis_modules/halo_finding/hop/kd.h:22,
from yt/analysis_modules/halo_finding/hop/hop_kd.c:22:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
gcc: yt/analysis_modules/halo_finding/hop/hop_regroup.c
In file included from yt/analysis_modules/halo_finding/hop/hop_regroup.c:9:0:
yt/analysis_modules/halo_finding/hop/slice.h:73:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
Slice *newslice();
^
yt/analysis_modules/halo_finding/hop/hop_regroup.c: In function ‘parsecommandline’:
yt/analysis_modules/halo_finding/hop/hop_regroup.c:89:9: warning: variable ‘narg’ set but not used [-Wunused-but-set-variable]
int narg, qmerge;
^
yt/analysis_modules/halo_finding/hop/hop_regroup.c: In function ‘regroup_main’:
yt/analysis_modules/halo_finding/hop/hop_regroup.c:216:11: warning: unused variable ‘f’ [-Wunused-variable]
FILE *f;
^
yt/analysis_modules/halo_finding/hop/hop_regroup.c: In function ‘densitycut’:
yt/analysis_modules/halo_finding/hop/hop_regroup.c:326:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (fread(density,sizeof(float),block,f)!=block)
^
yt/analysis_modules/halo_finding/hop/hop_regroup.c: In function ‘merge_groups_boundaries’:
yt/analysis_modules/halo_finding/hop/hop_regroup.c:470:5: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wparentheses]
if (gdensity[g1]>=peakdensthresh && gdensity[g2]>=peakdensthresh)
^
yt/analysis_modules/halo_finding/hop/hop_regroup.c:412:11: warning: unused variable ‘boundfp’ [-Wunused-variable]
FILE *boundfp;
^
yt/analysis_modules/halo_finding/hop/hop_regroup.c:411:11: warning: unused variable ‘fp’ [-Wunused-variable]
FILE *fp;
^
yt/analysis_modules/halo_finding/hop/hop_regroup.c:409:10: warning: unused variable ‘line’ [-Wunused-variable]
char line[80]; /*, *tempfilename; */
^
yt/analysis_modules/halo_finding/hop/hop_regroup.c:407:26: warning: unused variable ‘fdum’ [-Wunused-variable]
float *densestbound, fdum[3], dens;
^
yt/analysis_modules/halo_finding/hop/hop_regroup.c:405:12: warning: unused variable ‘k’ [-Wunused-variable]
int j, k, g1, g2, ngroups, dummy[3];
^
yt/analysis_modules/halo_finding/hop/hop_regroup.c: In function ‘sort_groups’:
yt/analysis_modules/halo_finding/hop/hop_regroup.c:652:5: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wparentheses]
if (igr>=0)
^
gcc: yt/analysis_modules/halo_finding/hop/hop_slice.c
In file included from yt/analysis_modules/halo_finding/hop/hop_slice.c:9:0:
yt/analysis_modules/halo_finding/hop/slice.h:73:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
Slice *newslice();
^
yt/analysis_modules/halo_finding/hop/hop_slice.c:14:8: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
Slice *newslice()
^
yt/analysis_modules/halo_finding/hop/hop_slice.c: In function ‘f77write’:
yt/analysis_modules/halo_finding/hop/hop_slice.c:70:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (fwrite(p,1,len,f)!=len) return 1;
^
yt/analysis_modules/halo_finding/hop/hop_slice.c: In function ‘f77read’:
yt/analysis_modules/halo_finding/hop/hop_slice.c:89:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (fread(p,1,size,f)!=size) myerror("f77read(): Error reading data.");
^
gcc: yt/analysis_modules/halo_finding/hop/hop_smooth.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from yt/analysis_modules/halo_finding/hop/kd.h:22,
from yt/analysis_modules/halo_finding/hop/smooth.h:16,
from yt/analysis_modules/halo_finding/hop/hop_smooth.c:20:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
yt/analysis_modules/halo_finding/hop/hop_smooth.c: In function ‘smInit’:
yt/analysis_modules/halo_finding/hop/hop_smooth.c:34:27: warning: unused variable ‘PQ_i’ [-Wunused-variable]
yt/analysis_modules/halo_finding/hop/hop_smooth.c:34:12: warning: unused variable ‘PQ_lt’ [-Wunused-variable]
yt/analysis_modules/halo_finding/hop/hop_smooth.c:34:6: warning: unused variable ‘PQ_t’ [-Wunused-variable]
PQ_STATIC;
^
yt/analysis_modules/halo_finding/hop/hop_smooth.c: In function ‘smBallSearch’:
yt/analysis_modules/halo_finding/hop/hop_smooth.c:88:27: warning: unused variable ‘PQ_i’ [-Wunused-variable]
yt/analysis_modules/halo_finding/hop/hop_smooth.c:88:22: warning: unused variable ‘PQ_j’ [-Wunused-variable]
yt/analysis_modules/halo_finding/hop/hop_smooth.c:84:12: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
PARTICLE *p;
^
yt/analysis_modules/halo_finding/hop/hop_smooth.c: In function ‘smBallGather’:
yt/analysis_modules/halo_finding/hop/hop_smooth.c:175:12: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
PARTICLE *p;
^
yt/analysis_modules/halo_finding/hop/hop_smooth.c: In function ‘smSmooth’:
yt/analysis_modules/halo_finding/hop/hop_smooth.c:227:12: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
PARTICLE *p;
^
yt/analysis_modules/halo_finding/hop/hop_smooth.c: In function ‘smReSmooth’:
yt/analysis_modules/halo_finding/hop/hop_smooth.c:370:12: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
PARTICLE *p;
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from yt/analysis_modules/halo_finding/hop/kd.h:22,
from yt/analysis_modules/halo_finding/hop/smooth.h:16,
from yt/analysis_modules/halo_finding/hop/hop_smooth.c:20:
yt/analysis_modules/halo_finding/hop/hop_smooth.c: At top level:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
gcc: yt/analysis_modules/halo_finding/hop/EnzoHop.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from yt/analysis_modules/halo_finding/hop/kd.h:22,
from yt/analysis_modules/halo_finding/hop/EnzoHop.c:20:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from yt/analysis_modules/halo_finding/hop/hop.h:1:0,
from yt/analysis_modules/halo_finding/hop/EnzoHop.c:21:
yt/analysis_modules/halo_finding/hop/slice.h:73:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
Slice *newslice();
^
yt/analysis_modules/halo_finding/hop/EnzoHop.c: In function ‘Py_EnzoHop’:
yt/analysis_modules/halo_finding/hop/EnzoHop.c:117:21: warning: unused variable ‘kdcount’ [-Wunused-variable]
int nBucket = 16, kdcount = 0;
^
yt/analysis_modules/halo_finding/hop/EnzoHop.c: In function ‘kDTreeType_init’:
yt/analysis_modules/halo_finding/hop/EnzoHop.c:276:5: warning: implicit declaration of function ‘PrepareKD’ [-Wimplicit-function-declaration]
PrepareKD(self->kd);
^
yt/analysis_modules/halo_finding/hop/EnzoHop.c: In function ‘kDTreeType_up_pass’:
yt/analysis_modules/halo_finding/hop/EnzoHop.c:316:5: warning: implicit declaration of function ‘kdUpPass’ [-Wimplicit-function-declaration]
kdUpPass(self->kd, iCell);
^
yt/analysis_modules/halo_finding/hop/EnzoHop.c: In function ‘kDTreeType_median_jst’:
yt/analysis_modules/halo_finding/hop/EnzoHop.c:340:18: warning: implicit declaration of function ‘kdMedianJst’ [-Wimplicit-function-declaration]
int median = kdMedianJst(self->kd, d, l, u);
^
gcc: yt/analysis_modules/halo_finding/hop/hop_hop.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from yt/analysis_modules/halo_finding/hop/kd.h:22,
from yt/analysis_modules/halo_finding/hop/hop_hop.c:22:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from yt/analysis_modules/halo_finding/hop/hop.h:1:0,
from yt/analysis_modules/halo_finding/hop/hop_hop.c:23:
yt/analysis_modules/halo_finding/hop/slice.h:73:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
Slice *newslice();
^
yt/analysis_modules/halo_finding/hop/hop_hop.c: In function ‘hop_main’:
yt/analysis_modules/halo_finding/hop/hop_hop.c:60:41: warning: unused variable ‘densfile’ [-Wunused-variable]
char ach[80],achFile[80], *inputfile, *densfile;
^
yt/analysis_modules/halo_finding/hop/hop_hop.c:60:29: warning: variable ‘inputfile’ set but not used [-Wunused-but-set-variable]
char ach[80],achFile[80], *inputfile, *densfile;
^
yt/analysis_modules/halo_finding/hop/hop_hop.c:60:7: warning: unused variable ‘ach’ [-Wunused-variable]
char ach[80],achFile[80], *inputfile, *densfile;
^
yt/analysis_modules/halo_finding/hop/hop_hop.c:59:13: warning: unused variable ‘fpb’ [-Wunused-variable]
FILE *fp, *fpb;
^
yt/analysis_modules/halo_finding/hop/hop_hop.c:59:8: warning: unused variable ‘fp’ [-Wunused-variable]
FILE *fp, *fpb;
^
yt/analysis_modules/halo_finding/hop/hop_hop.c:58:22: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
int nBucket,nSmooth,i,j;
^
yt/analysis_modules/halo_finding/hop/hop_hop.c:58:6: warning: variable ‘nBucket’ set but not used [-Wunused-but-set-variable]
int nBucket,nSmooth,i,j;
^
yt/analysis_modules/halo_finding/hop/hop_hop.c: In function ‘MergeGroupsHash’:
yt/analysis_modules/halo_finding/hop/hop_hop.c:375:24: warning: unused variable ‘newgroup’ [-Wunused-variable]
int j, k, g, next, newgroup;
^
yt/analysis_modules/halo_finding/hop/hop_hop.c:375:18: warning: unused variable ‘next’ [-Wunused-variable]
int j, k, g, next, newgroup;
^
yt/analysis_modules/halo_finding/hop/hop_hop.c:375:15: warning: unused variable ‘g’ [-Wunused-variable]
int j, k, g, next, newgroup;
^
yt/analysis_modules/halo_finding/hop/hop_hop.c:375:12: warning: unused variable ‘k’ [-Wunused-variable]
int j, k, g, next, newgroup;
^
yt/analysis_modules/halo_finding/hop/hop_hop.c: In function ‘ReSizeSMX’:
yt/analysis_modules/halo_finding/hop/hop_hop.c:466:30: warning: unused variable ‘PQ_i’ [-Wunused-variable]
yt/analysis_modules/halo_finding/hop/hop_hop.c:466:15: warning: unused variable ‘PQ_lt’ [-Wunused-variable]
yt/analysis_modules/halo_finding/hop/hop_hop.c:466:9: warning: unused variable ‘PQ_t’ [-Wunused-variable]
PQ_STATIC;
^
yt/analysis_modules/halo_finding/hop/hop_hop.c: In function ‘binOutHop’:
yt/analysis_modules/halo_finding/hop/hop_hop.c:524:11: warning: unused variable ‘dummy’ [-Wunused-variable]
int j,dummy;
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from yt/analysis_modules/halo_finding/hop/kd.h:22,
from yt/analysis_modules/halo_finding/hop/hop_hop.c:22:
yt/analysis_modules/halo_finding/hop/hop_hop.c: At top level:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/yt/analysis_modules/halo_finding/hop/EnzoHop.o build/temp.linux-x86_64-3.5/yt/analysis_modules/halo_finding/hop/hop_hop.o build/temp.linux-x86_64-3.5/yt/analysis_modules/halo_finding/hop/hop_kd.o build/temp.linux-x86_64-3.5/yt/analysis_modules/halo_finding/hop/hop_regroup.o build/temp.linux-x86_64-3.5/yt/analysis_modules/halo_finding/hop/hop_slice.o build/temp.linux-x86_64-3.5/yt/analysis_modules/halo_finding/hop/hop_smooth.o -o build/lib.linux-x86_64-3.5/yt/analysis_modules/halo_finding/hop/EnzoHop.cpython-35m-x86_64-linux-gnu.so
building 'yt.analysis_modules.ppv_cube.ppv_utils' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-3.5/build
creating build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5
creating build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt
creating build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/analysis_modules
creating build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/analysis_modules/ppv_cube
compile options: '-I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/analysis_modules/ppv_cube/ppv_utils.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/analysis_modules/ppv_cube/ppv_utils.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/analysis_modules/ppv_cube/ppv_utils.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/analysis_modules/ppv_cube/ppv_utils.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/analysis_modules/ppv_cube/ppv_utils.o -lm -o build/lib.linux-x86_64-3.5/yt/analysis_modules/ppv_cube/ppv_utils.cpython-35m-x86_64-linux-gnu.so
building 'yt.frontends.artio._artio_caller' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/frontends
creating build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/frontends/artio
creating build/temp.linux-x86_64-3.5/yt/frontends
creating build/temp.linux-x86_64-3.5/yt/frontends/artio
creating build/temp.linux-x86_64-3.5/yt/frontends/artio/artio_headers
compile options: '-Iyt/frontends/artio/artio_headers/ -Iyt/geometry/ -Iyt/utilities/lib/ -I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c:248:0:
yt/frontends/artio/artio_headers/cosmology.h:20:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
CosmologyParameters *cosmology_allocate();
^
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c: In function ‘__pyx_pf_2yt_9frontends_5artio_13_artio_caller_22ARTIORootMeshContainer___init__’:
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c:17220:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_5; __pyx_t_4+=1) {
^
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c: In function ‘__pyx_pf_2yt_9frontends_5artio_13_artio_caller_22ARTIORootMeshContainer_4icoords’:
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c:17863:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (__pyx_t_10 = __pyx_v_self->sfc_start; __pyx_t_10 < __pyx_t_12; __pyx_t_10+=1) {
^
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c: In function ‘__pyx_pf_2yt_9frontends_5artio_13_artio_caller_22ARTIORootMeshContainer_6fcoords’:
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c:18272:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (__pyx_t_10 = __pyx_v_self->sfc_start; __pyx_t_10 < __pyx_t_12; __pyx_t_10+=1) {
^
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c: In function ‘__pyx_pf_2yt_9frontends_5artio_13_artio_caller_22ARTIORootMeshContainer_12selector_fill’:
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c:19480:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (__pyx_t_12 = __pyx_v_self->sfc_start; __pyx_t_12 < __pyx_t_13; __pyx_t_12+=1) {
^
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c: In function ‘__pyx_pf_2yt_9frontends_5artio_13_artio_caller_22ARTIORootMeshContainer_14mask’:
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c:19863:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (__pyx_t_13 = __pyx_v_self->sfc_start; __pyx_t_13 < __pyx_t_12; __pyx_t_13+=1) {
^
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c: In function ‘__pyx_pf_2yt_9frontends_5artio_13_artio_caller_22ARTIORootMeshContainer_18fill_sfc’:
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c:20471:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (__pyx_t_11 = __pyx_v_self->sfc_start; __pyx_t_11 < __pyx_t_16; __pyx_t_11+=1) {
^
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c: In function ‘__pyx_pf_2yt_9frontends_5artio_13_artio_caller_22ARTIORootMeshContainer_20deposit’:
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c:20977:57: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (__pyx_t_15 = __pyx_v_self->sfc_start; __pyx_t_15 < __pyx_t_14; __pyx_t_15+=1) {
^
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c:21220:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
__pyx_t_1 = ((__pyx_v_sfc < __pyx_v_self->sfc_start) != 0);
^
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c:21226:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
__pyx_t_1 = ((__pyx_v_sfc > __pyx_v_self->sfc_end) != 0);
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c:242:
build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c: At top level:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
gcc: yt/frontends/artio/artio_headers/artio_grid.c
gcc: yt/frontends/artio/artio_headers/artio_file.c
gcc: yt/frontends/artio/artio_headers/artio_parameter.c
gcc: yt/frontends/artio/artio_headers/artio_sfc.c
gcc: yt/frontends/artio/artio_headers/artio_mpi.c
gcc: yt/frontends/artio/artio_headers/artio_particle.c
gcc: yt/frontends/artio/artio_headers/cosmology.c
In file included from yt/frontends/artio/artio_headers/cosmology.c:32:0:
yt/frontends/artio/artio_headers/cosmology.h:20:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
CosmologyParameters *cosmology_allocate();
^
yt/frontends/artio/artio_headers/cosmology.c:67:22: warning: function declaration isn’t a prototype [-Wstrict-prototypes]
CosmologyParameters *cosmology_allocate() {
^
gcc: yt/frontends/artio/artio_headers/artio.c
gcc: yt/frontends/artio/artio_headers/artio_endian.c
gcc: yt/frontends/artio/artio_headers/artio_posix.c
yt/frontends/artio/artio_headers/artio_posix.c: In function ‘artio_file_fwrite_i’:
yt/frontends/artio/artio_headers/artio_posix.c:128:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if ( count > ARTIO_INT64_MAX / size ) {
^
yt/frontends/artio/artio_headers/artio_posix.c:139:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if ( fwrite( p, 1, size32, handle->fh ) != size32 ) {
^
yt/frontends/artio/artio_headers/artio_posix.c:152:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
handle->fh ) != handle->bfsize ) {
^
yt/frontends/artio/artio_headers/artio_posix.c:161:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
handle->fh ) != handle->bfsize ) {
^
yt/frontends/artio/artio_headers/artio_posix.c: In function ‘artio_file_fflush_i’:
yt/frontends/artio/artio_headers/artio_posix.c:183:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
handle->fh ) != handle->bfptr ) {
^
yt/frontends/artio/artio_headers/artio_posix.c: In function ‘artio_file_fread_i’:
yt/frontends/artio/artio_headers/artio_posix.c:212:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if ( count > ARTIO_INT64_MAX / size ) {
^
yt/frontends/artio/artio_headers/artio_posix.c:222:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if ( fread( p, 1, size32, handle->fh) != size32 ) {
^
yt/frontends/artio/artio_headers/artio_posix.c:238:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
handle->bfptr + remain >= handle->bfend ) {
^
yt/frontends/artio/artio_headers/artio_posix.c: In function ‘artio_file_fseek_i’:
yt/frontends/artio/artio_headers/artio_posix.c:322:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
current <= offset &&
^
yt/frontends/artio/artio_headers/artio_posix.c:323:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
offset < current + handle->bfsize &&
^
yt/frontends/artio/artio_headers/artio_posix.c:324:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
handle->bfptr == offset - current ) {
^
yt/frontends/artio/artio_headers/artio_posix.c:330:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
offset >= current - handle->bfend &&
^
yt/frontends/artio/artio_headers/artio_posix.c:331:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
offset < current ) {
^
gcc: yt/frontends/artio/artio_headers/artio_selector.c
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.o build/temp.linux-x86_64-3.5/yt/frontends/artio/artio_headers/cosmology.o build/temp.linux-x86_64-3.5/yt/frontends/artio/artio_headers/artio_sfc.o build/temp.linux-x86_64-3.5/yt/frontends/artio/artio_headers/artio_selector.o build/temp.linux-x86_64-3.5/yt/frontends/artio/artio_headers/artio_posix.o build/temp.linux-x86_64-3.5/yt/frontends/artio/artio_headers/artio_particle.o build/temp.linux-x86_64-3.5/yt/frontends/artio/artio_headers/artio_parameter.o build/temp.linux-x86_64-3.5/yt/frontends/artio/artio_headers/artio_mpi.o build/temp.linux-x86_64-3.5/yt/frontends/artio/artio_headers/artio_grid.o build/temp.linux-x86_64-3.5/yt/frontends/artio/artio_headers/artio_file.o build/temp.linux-x86_64-3.5/yt/frontends/artio/artio_headers/artio_endian.o build/temp.linux-x86_64-3.5/yt/frontends/artio/artio_headers/artio.o -o build/lib.linux-x86_64-3.5/yt/frontends/artio/_artio_caller.cpython-35m-x86_64-linux-gnu.so
building 'yt.geometry.grid_visitors' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/geometry
compile options: '-Iyt/utilities/lib/ -I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/geometry/grid_visitors.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/grid_visitors.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/grid_visitors.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/geometry/grid_visitors.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/geometry/grid_visitors.o -lm -o build/lib.linux-x86_64-3.5/yt/geometry/grid_visitors.cpython-35m-x86_64-linux-gnu.so
building 'yt.geometry.grid_container' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/geometry/grid_container.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/grid_container.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
build/src.linux-x86_64-3.5/yt/geometry/grid_container.c: In function ‘__pyx_pf_2yt_8geometry_14grid_container_8GridTree_11select_icoords’:
build/src.linux-x86_64-3.5/yt/geometry/grid_container.c:3702:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
__pyx_t_1 = ((__pyx_v_size == -1) != 0);
^
build/src.linux-x86_64-3.5/yt/geometry/grid_container.c: In function ‘__pyx_pf_2yt_8geometry_14grid_container_8GridTree_13select_ires’:
build/src.linux-x86_64-3.5/yt/geometry/grid_container.c:3982:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
__pyx_t_1 = ((__pyx_v_size == -1) != 0);
^
build/src.linux-x86_64-3.5/yt/geometry/grid_container.c: In function ‘__pyx_pf_2yt_8geometry_14grid_container_8GridTree_15select_fcoords’:
build/src.linux-x86_64-3.5/yt/geometry/grid_container.c:4254:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
__pyx_t_1 = ((__pyx_v_size == -1) != 0);
^
build/src.linux-x86_64-3.5/yt/geometry/grid_container.c: In function ‘__pyx_pf_2yt_8geometry_14grid_container_8GridTree_17select_fwidth’:
build/src.linux-x86_64-3.5/yt/geometry/grid_container.c:4534:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
__pyx_t_1 = ((__pyx_v_size == -1) != 0);
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/grid_container.c:242:
build/src.linux-x86_64-3.5/yt/geometry/grid_container.c: At top level:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/geometry/grid_container.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/geometry/grid_container.o -lm -o build/lib.linux-x86_64-3.5/yt/geometry/grid_container.cpython-35m-x86_64-linux-gnu.so
building 'yt.geometry.oct_container' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/geometry/oct_container.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/oct_container.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
build/src.linux-x86_64-3.5/yt/geometry/oct_container.c: In function ‘__pyx_pf_2yt_8geometry_13oct_container_15OctreeContainer_39finalize’:
build/src.linux-x86_64-3.5/yt/geometry/oct_container.c:11490:84: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
if (unlikely(!((((__pyx_v_data.global_index + 1) * __pyx_v_data.nz) == __pyx_v_data.index) != 0))) {
^
build/src.linux-x86_64-3.5/yt/geometry/oct_container.c: In function ‘__pyx_f_2yt_8geometry_13oct_container_21SparseOctreeContainer_get_root’:
build/src.linux-x86_64-3.5/yt/geometry/oct_container.c:12265:139: warning: passing argument 3 of ‘tfind’ from incompatible pointer type [-Wincompatible-pointer-types]
__pyx_v_oresult = ((struct __pyx_t_2yt_8geometry_13oct_container_OctKey **)tfind(((void *)(&__pyx_v_okey)), (&__pyx_v_self->tree_root), __pyx_f_2yt_8geometry_13oct_container_root_node_compare));
^
In file included from build/src.linux-x86_64-3.5/yt/geometry/oct_container.c:245:0:
/usr/include/search.h:134:14: note: expected ‘__compar_fn_t {aka int (*)(const void *, const void *)}’ but argument is of type ‘int (*)(void *, void *)’
extern void *tfind (const void *__key, void *const *__rootp,
^
build/src.linux-x86_64-3.5/yt/geometry/oct_container.c: In function ‘__pyx_f_2yt_8geometry_13oct_container_21SparseOctreeContainer_next_root’:
build/src.linux-x86_64-3.5/yt/geometry/oct_container.c:12902:63: warning: passing argument 3 of ‘tsearch’ from incompatible pointer type [-Wincompatible-pointer-types]
tsearch(((void *)__pyx_v_ikey), (&__pyx_v_self->tree_root), __pyx_f_2yt_8geometry_13oct_container_root_node_compare);
^
In file included from build/src.linux-x86_64-3.5/yt/geometry/oct_container.c:245:0:
/usr/include/search.h:129:14: note: expected ‘__compar_fn_t {aka int (*)(const void *, const void *)}’ but argument is of type ‘int (*)(void *, void *)’
extern void *tsearch (const void *__key, void **__rootp,
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/oct_container.c:242:
build/src.linux-x86_64-3.5/yt/geometry/oct_container.c: At top level:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/geometry/oct_container.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/geometry/oct_container.o -lm -o build/lib.linux-x86_64-3.5/yt/geometry/oct_container.cpython-35m-x86_64-linux-gnu.so
building 'yt.geometry.oct_visitors' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/geometry/oct_visitors.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/oct_visitors.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
build/src.linux-x86_64-3.5/yt/geometry/oct_visitors.c: In function ‘__pyx_f_2yt_8geometry_12oct_visitors_count_total_octs’:
build/src.linux-x86_64-3.5/yt/geometry/oct_visitors.c:1382:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
__pyx_t_1 = ((__pyx_v_data->last != __pyx_v_o->domain_ind) != 0);
^
build/src.linux-x86_64-3.5/yt/geometry/oct_visitors.c: In function ‘__pyx_f_2yt_8geometry_12oct_visitors_mark_octs’:
build/src.linux-x86_64-3.5/yt/geometry/oct_visitors.c:1490:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
__pyx_t_1 = ((__pyx_v_data->last != __pyx_v_o->domain_ind) != 0);
^
build/src.linux-x86_64-3.5/yt/geometry/oct_visitors.c: In function ‘__pyx_f_2yt_8geometry_12oct_visitors_index_octs’:
build/src.linux-x86_64-3.5/yt/geometry/oct_visitors.c:1659:36: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
__pyx_t_1 = ((__pyx_v_data->last != __pyx_v_o->domain_ind) != 0);
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/oct_visitors.c:242:
build/src.linux-x86_64-3.5/yt/geometry/oct_visitors.c: At top level:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/geometry/oct_visitors.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/geometry/oct_visitors.o -lm -o build/lib.linux-x86_64-3.5/yt/geometry/oct_visitors.cpython-35m-x86_64-linux-gnu.so
building 'yt.geometry.particle_oct_container' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/geometry/particle_oct_container.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/particle_oct_container.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
build/src.linux-x86_64-3.5/yt/geometry/particle_oct_container.c: In function ‘__pyx_pf_2yt_8geometry_22particle_oct_container_23ParticleOctreeContainer_13add’:
build/src.linux-x86_64-3.5/yt/geometry/particle_oct_container.c:3869:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
__pyx_t_1 = ((__pyx_v_index == __pyx_v_FLAG) != 0);
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/particle_oct_container.c:242:
build/src.linux-x86_64-3.5/yt/geometry/particle_oct_container.c: At top level:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/geometry/particle_oct_container.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/geometry/particle_oct_container.o -lm -o build/lib.linux-x86_64-3.5/yt/geometry/particle_oct_container.cpython-35m-x86_64-linux-gnu.so
building 'yt.geometry.selection_routines' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/geometry/selection_routines.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/selection_routines.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/selection_routines.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/geometry/selection_routines.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/geometry/selection_routines.o -lm -o build/lib.linux-x86_64-3.5/yt/geometry/selection_routines.cpython-35m-x86_64-linux-gnu.so
building 'yt.geometry.particle_deposit' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/geometry/particle_deposit.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/particle_deposit.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/particle_deposit.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/geometry/particle_deposit.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/geometry/particle_deposit.o -lm -o build/lib.linux-x86_64-3.5/yt/geometry/particle_deposit.cpython-35m-x86_64-linux-gnu.so
building 'yt.geometry.particle_smooth' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/geometry/particle_smooth.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/particle_smooth.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/particle_smooth.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/geometry/particle_smooth.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
build/src.linux-x86_64-3.5/yt/geometry/particle_smooth.c:2214:12: warning: ‘__pyx_f_2yt_8geometry_15particle_smooth_Neighbor_compare’ defined but not used [-Wunused-function]
static int __pyx_f_2yt_8geometry_15particle_smooth_Neighbor_compare(void *__pyx_v_on1, void *__pyx_v_on2) {
^
build/src.linux-x86_64-3.5/yt/geometry/particle_smooth.c: In function ‘__pyx_f_2yt_8geometry_15particle_smooth_23ParticleSmoothOperation_neighbor_process’:
build/src.linux-x86_64-3.5/yt/geometry/particle_smooth.c:7786:21: warning: ‘__pyx_v_nneighbors’ may be used uninitialized in this function [-Wmaybe-uninitialized]
__pyx_t_7 = ((struct __pyx_vtabstruct_2yt_8geometry_15particle_smooth_ParticleSmoothOperation *)__pyx_v_self->__pyx_vtab)->neighbor_search(__pyx_v_self, __pyx_v_opos, __pyx_v_octree, __pyx_v_nind, __pyx_v_nsize, __pyx_v_nneighbors, __pyx_v_domain_id, &__pyx_t_8);
^
build/src.linux-x86_64-3.5/yt/geometry/particle_smooth.c:7673:7: note: ‘__pyx_v_nneighbors’ was declared here
int __pyx_v_nneighbors;
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/geometry/particle_smooth.o -lm -o build/lib.linux-x86_64-3.5/yt/geometry/particle_smooth.cpython-35m-x86_64-linux-gnu.so
building 'yt.geometry.fake_octree' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/geometry/fake_octree.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/fake_octree.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/geometry/fake_octree.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/geometry/fake_octree.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/geometry/fake_octree.o -lm -o build/lib.linux-x86_64-3.5/yt/geometry/fake_octree.cpython-35m-x86_64-linux-gnu.so
building 'yt.utilities.spatial.ckdtree' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/utilities
creating build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/utilities/spatial
compile options: '-I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/utilities/spatial/ckdtree.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/utilities/spatial/ckdtree.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
build/src.linux-x86_64-3.5/yt/utilities/spatial/ckdtree.c: In function ‘__pyx_pf_2yt_9utilities_7spatial_7ckdtree_7cKDTree_2__dealloc__’:
build/src.linux-x86_64-3.5/yt/utilities/spatial/ckdtree.c:4536:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
__pyx_t_1 = ((((int)__pyx_v_self->tree) == 0) != 0);
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/utilities/spatial/ckdtree.c:242:
build/src.linux-x86_64-3.5/yt/utilities/spatial/ckdtree.c: At top level:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/utilities/spatial/ckdtree.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/utilities/spatial/ckdtree.o -lm -o build/lib.linux-x86_64-3.5/yt/utilities/spatial/ckdtree.cpython-35m-x86_64-linux-gnu.so
building 'yt.utilities.spatial._distance_wrap' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-3.5/yt/utilities
creating build/temp.linux-x86_64-3.5/yt/utilities/spatial
creating build/temp.linux-x86_64-3.5/yt/utilities/spatial/src
compile options: '-I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: yt/utilities/spatial/src/distance_wrap.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from yt/utilities/spatial/src/distance_wrap.c:40:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
yt/utilities/spatial/src/distance_wrap.c: In function ‘pdist_weighted_minkowski_wrap’:
yt/utilities/spatial/src/distance_wrap.c:866:7: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
w = (const double*)w_->data;
^
gcc: yt/utilities/spatial/src/distance.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from yt/utilities/spatial/src/distance.c:37:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from yt/utilities/spatial/src/distance.c:37:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/yt/utilities/spatial/src/distance_wrap.o build/temp.linux-x86_64-3.5/yt/utilities/spatial/src/distance.o -o build/lib.linux-x86_64-3.5/yt/utilities/spatial/_distance_wrap.cpython-35m-x86_64-linux-gnu.so
building 'yt.utilities.lib.bitarray' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/utilities/lib
compile options: '-I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/utilities/lib/bitarray.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/utilities/lib/bitarray.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/utilities/lib/bitarray.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/utilities/lib/bitarray.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/utilities/lib/bitarray.o -lm -o build/lib.linux-x86_64-3.5/yt/utilities/lib/bitarray.cpython-35m-x86_64-linux-gnu.so
building 'yt.utilities.lib.CICDeposit' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/utilities/lib/CICDeposit.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/utilities/lib/CICDeposit.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/utilities/lib/CICDeposit.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/utilities/lib/CICDeposit.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/utilities/lib/CICDeposit.o -lm -o build/lib.linux-x86_64-3.5/yt/utilities/lib/CICDeposit.cpython-35m-x86_64-linux-gnu.so
building 'yt.utilities.lib.ContourFinding' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -Iyt/geometry/ -I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/utilities/lib/ContourFinding.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/utilities/lib/ContourFinding.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
build/src.linux-x86_64-3.5/yt/utilities/lib/ContourFinding.c: In function ‘__pyx_pf_2yt_9utilities_3lib_14ContourFinding_19ParticleContourTree_4identify_contours’:
build/src.linux-x86_64-3.5/yt/utilities/lib/ContourFinding.c:10851:195: warning: passing argument 4 of ‘__pyx_v_self->__pyx_vtab->__pyx_fuse_0link_particles’ from incompatible pointer type [-Wincompatible-pointer-types]
((struct __pyx_vtabstruct_2yt_9utilities_3lib_14ContourFinding_ParticleContourTree *)__pyx_v_self->__pyx_vtab)->__pyx_fuse_0link_particles(__pyx_v_self, __pyx_v_container, __pyx_v_fpos, __pyx_v_ipind, (*__Pyx_BufPtrStrided1d(__pyx_t_5numpy_int64_t *, __pyx_pybuffernd_pcount.rcbuffer->pybuffer.buf, __pyx_t_37, __pyx_pybuffernd_pcount.diminfo[0].strides)), __pyx_v_offset, __pyx_v_pind0, ((*__Pyx_BufPtrStrided1d(__pyx_t_5numpy_int64_t *, __pyx_pybuffernd_doff.rcbuffer->pybuffer.buf, __pyx_t_38, __pyx_pybuffernd_doff.diminfo[0].strides)) + __pyx_v_j));
^
build/src.linux-x86_64-3.5/yt/utilities/lib/ContourFinding.c:10851:195: note: expected ‘long long int *’ but argument is of type ‘__pyx_t_5numpy_int64_t * {aka long int *}’
build/src.linux-x86_64-3.5/yt/utilities/lib/ContourFinding.c: In function ‘__pyx_pf_2yt_9utilities_3lib_14ContourFinding_19ParticleContourTree_6identify_contours’:
build/src.linux-x86_64-3.5/yt/utilities/lib/ContourFinding.c:12397:195: warning: passing argument 4 of ‘__pyx_v_self->__pyx_vtab->__pyx_fuse_1link_particles’ from incompatible pointer type [-Wincompatible-pointer-types]
((struct __pyx_vtabstruct_2yt_9utilities_3lib_14ContourFinding_ParticleContourTree *)__pyx_v_self->__pyx_vtab)->__pyx_fuse_1link_particles(__pyx_v_self, __pyx_v_container, __pyx_v_fpos, __pyx_v_ipind, (*__Pyx_BufPtrStrided1d(__pyx_t_5numpy_int64_t *, __pyx_pybuffernd_pcount.rcbuffer->pybuffer.buf, __pyx_t_37, __pyx_pybuffernd_pcount.diminfo[0].strides)), __pyx_v_offset, __pyx_v_pind0, ((*__Pyx_BufPtrStrided1d(__pyx_t_5numpy_int64_t *, __pyx_pybuffernd_doff.rcbuffer->pybuffer.buf, __pyx_t_38, __pyx_pybuffernd_doff.diminfo[0].strides)) + __pyx_v_j));
^
build/src.linux-x86_64-3.5/yt/utilities/lib/ContourFinding.c:12397:195: note: expected ‘long long int *’ but argument is of type ‘__pyx_t_5numpy_int64_t * {aka long int *}’
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/utilities/lib/ContourFinding.c:242:
build/src.linux-x86_64-3.5/yt/utilities/lib/ContourFinding.c: At top level:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/utilities/lib/ContourFinding.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/utilities/lib/ContourFinding.o -lm -o build/lib.linux-x86_64-3.5/yt/utilities/lib/ContourFinding.cpython-35m-x86_64-linux-gnu.so
building 'yt.utilities.lib.DepthFirstOctree' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/utilities/lib/DepthFirstOctree.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/utilities/lib/DepthFirstOctree.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/utilities/lib/DepthFirstOctree.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/utilities/lib/DepthFirstOctree.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
build/src.linux-x86_64-3.5/yt/utilities/lib/DepthFirstOctree.c: In function ‘__pyx_pf_2yt_9utilities_3lib_16DepthFirstOctree_2RecurseOctreeByLevels.isra.36’:
build/src.linux-x86_64-3.5/yt/utilities/lib/DepthFirstOctree.c:4129:17: warning: ‘__pyx_v_cz’ may be used uninitialized in this function [-Wmaybe-uninitialized]
__pyx_t_8 = PyFloat_FromDouble(__pyx_v_cz); if (unlikely(!__pyx_t_8)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 132; __pyx_clineno = __LINE__; goto __pyx_L1_error;}
^
build/src.linux-x86_64-3.5/yt/utilities/lib/DepthFirstOctree.c:3827:28: note: ‘__pyx_v_cz’ was declared here
__pyx_t_5numpy_float64_t __pyx_v_cz;
^
build/src.linux-x86_64-3.5/yt/utilities/lib/DepthFirstOctree.c:9588:20: warning: ‘__pyx_v_k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
return PyInt_FromLong((long) value);
^
build/src.linux-x86_64-3.5/yt/utilities/lib/DepthFirstOctree.c:3808:26: note: ‘__pyx_v_k’ was declared here
__pyx_t_5numpy_int32_t __pyx_v_k;
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/utilities/lib/DepthFirstOctree.o -lm -o build/lib.linux-x86_64-3.5/yt/utilities/lib/DepthFirstOctree.cpython-35m-x86_64-linux-gnu.so
building 'yt.utilities.lib.fortran_reader' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
gcc: build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c: In function ‘__pyx_pf_2yt_9utilities_3lib_14fortran_reader_4read_art_tree’:
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:2805:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
FIX_LONG(__pyx_v_next_record);
^
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:2805:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:2805:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:2805:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:2805:5: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c: In function ‘__pyx_pf_2yt_9utilities_3lib_14fortran_reader_6read_art_root_vars’:
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:3209:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
FIX_FLOAT(__pyx_v_temp);
^
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:3209:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:3209:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:3209:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:3209:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c: In function ‘__pyx_f_2yt_9utilities_3lib_14fortran_reader_read_art_vars’:
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:3402:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
FIX_FLOAT(__pyx_v_temp);
^
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:3402:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:3402:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:3402:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:3402:7: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:242:
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c: At top level:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.c:3280:13: warning: ‘__pyx_f_2yt_9utilities_3lib_14fortran_reader_read_art_vars’ defined but not used [-Wunused-function]
static void __pyx_f_2yt_9utilities_3lib_14fortran_reader_read_art_vars(FILE *__pyx_v_f, CYTHON_UNUSED int __pyx_v_min_level, CYTHON_UNUSED int __pyx_v_max_level, int __pyx_v_nhydro_vars, int __pyx_v_grid_level, long __pyx_v_grid_id, CYTHON_UNUSED long __pyx_v_child_offset, PyObject *__pyx_v_fields, PyArrayObject *__pyx_v_level_offsets, PyObject *__pyx_v_var) {
^
gcc -pthread -shared build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.o -lm -o build/lib.linux-x86_64-3.5/yt/utilities/lib/fortran_reader.cpython-35m-x86_64-linux-gnu.so
building 'yt.utilities.lib.geometry_utils' extension
compiling C sources
C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c'
extra options: '-fopenmp'
gcc: build/src.linux-x86_64-3.5/yt/utilities/lib/geometry_utils.c
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/utilities/lib/geometry_utils.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /home/alex/Python/include/python3.5m/pyatomic.h:12:0,
from /home/alex/Python/include/python3.5m/Python.h:53,
from build/src.linux-x86_64-3.5/yt/utilities/lib/geometry_utils.c:4:
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:40:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic _Bool atomic_bool;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:41:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic char atomic_char;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:42:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic signed char atomic_schar;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:43:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic unsigned char atomic_uchar;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:44:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic short atomic_short;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:45:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic unsigned short atomic_ushort;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:46:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic int atomic_int;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:47:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic unsigned int atomic_uint;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:48:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic long atomic_long;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:49:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic unsigned long atomic_ulong;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:50:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic long long atomic_llong;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:51:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic unsigned long long atomic_ullong;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:52:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __CHAR16_TYPE__ atomic_char16_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:53:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __CHAR32_TYPE__ atomic_char32_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:54:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __WCHAR_TYPE__ atomic_wchar_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:55:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __INT_LEAST8_TYPE__ atomic_int_least8_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:56:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __UINT_LEAST8_TYPE__ atomic_uint_least8_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:57:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __INT_LEAST16_TYPE__ atomic_int_least16_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:58:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __UINT_LEAST16_TYPE__ atomic_uint_least16_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:59:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __INT_LEAST32_TYPE__ atomic_int_least32_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:60:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __UINT_LEAST32_TYPE__ atomic_uint_least32_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:61:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __INT_LEAST64_TYPE__ atomic_int_least64_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:62:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __UINT_LEAST64_TYPE__ atomic_uint_least64_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:63:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __INT_FAST8_TYPE__ atomic_int_fast8_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:64:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __UINT_FAST8_TYPE__ atomic_uint_fast8_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:65:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __INT_FAST16_TYPE__ atomic_int_fast16_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:66:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __UINT_FAST16_TYPE__ atomic_uint_fast16_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:67:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __INT_FAST32_TYPE__ atomic_int_fast32_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:68:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __UINT_FAST32_TYPE__ atomic_uint_fast32_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:69:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __INT_FAST64_TYPE__ atomic_int_fast64_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:70:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __UINT_FAST64_TYPE__ atomic_uint_fast64_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:71:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __INTPTR_TYPE__ atomic_intptr_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:72:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __UINTPTR_TYPE__ atomic_uintptr_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:73:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __SIZE_TYPE__ atomic_size_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:74:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __PTRDIFF_TYPE__ atomic_ptrdiff_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:75:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __INTMAX_TYPE__ atomic_intmax_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:76:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic __UINTMAX_TYPE__ atomic_uintmax_t;
^
In file included from /home/alex/Python/include/python3.5m/pyatomic.h:12:0,
from /home/alex/Python/include/python3.5m/Python.h:53,
from build/src.linux-x86_64-3.5/yt/utilities/lib/geometry_utils.c:4:
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:218:1: sorry, unimplemented: ‘_Atomic’ with OpenMP
typedef _Atomic struct
^
In file included from /home/alex/Python/include/python3.5m/Python.h:53:0,
from build/src.linux-x86_64-3.5/yt/utilities/lib/geometry_utils.c:4:
/home/alex/Python/include/python3.5m/pyatomic.h:35:5: sorry, unimplemented: ‘_Atomic’ with OpenMP
_Atomic void *_value;
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/utilities/lib/geometry_utils.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/utilities/lib/geometry_utils.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: ‘_import_umath’ defined but not used [-Wunused-function]
_import_umath(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:17,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/utilities/lib/geometry_utils.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by " \
^
In file included from /home/alex/Python/include/python3.5m/pyatomic.h:12:0,
from /home/alex/Python/include/python3.5m/Python.h:53,
from build/src.linux-x86_64-3.5/yt/utilities/lib/geometry_utils.c:4:
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:40:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic _Bool atomic_bool;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:41:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic char atomic_char;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:42:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic signed char atomic_schar;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:43:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic unsigned char atomic_uchar;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:44:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic short atomic_short;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:45:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic unsigned short atomic_ushort;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:46:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic int atomic_int;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:47:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic unsigned int atomic_uint;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:48:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic long atomic_long;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:49:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic unsigned long atomic_ulong;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:50:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic long long atomic_llong;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:51:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic unsigned long long atomic_ullong;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:52:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __CHAR16_TYPE__ atomic_char16_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:53:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __CHAR32_TYPE__ atomic_char32_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:54:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __WCHAR_TYPE__ atomic_wchar_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:55:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __INT_LEAST8_TYPE__ atomic_int_least8_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:56:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __UINT_LEAST8_TYPE__ atomic_uint_least8_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:57:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __INT_LEAST16_TYPE__ atomic_int_least16_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:58:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __UINT_LEAST16_TYPE__ atomic_uint_least16_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:59:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __INT_LEAST32_TYPE__ atomic_int_least32_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:60:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __UINT_LEAST32_TYPE__ atomic_uint_least32_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:61:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __INT_LEAST64_TYPE__ atomic_int_least64_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:62:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __UINT_LEAST64_TYPE__ atomic_uint_least64_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:63:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __INT_FAST8_TYPE__ atomic_int_fast8_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:64:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __UINT_FAST8_TYPE__ atomic_uint_fast8_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:65:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __INT_FAST16_TYPE__ atomic_int_fast16_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:66:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __UINT_FAST16_TYPE__ atomic_uint_fast16_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:67:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __INT_FAST32_TYPE__ atomic_int_fast32_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:68:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __UINT_FAST32_TYPE__ atomic_uint_fast32_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:69:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __INT_FAST64_TYPE__ atomic_int_fast64_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:70:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __UINT_FAST64_TYPE__ atomic_uint_fast64_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:71:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __INTPTR_TYPE__ atomic_intptr_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:72:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __UINTPTR_TYPE__ atomic_uintptr_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:73:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __SIZE_TYPE__ atomic_size_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:74:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __PTRDIFF_TYPE__ atomic_ptrdiff_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:75:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __INTMAX_TYPE__ atomic_intmax_t;
^
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:76:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic __UINTMAX_TYPE__ atomic_uintmax_t;
^
In file included from /home/alex/Python/include/python3.5m/pyatomic.h:12:0,
from /home/alex/Python/include/python3.5m/Python.h:53,
from build/src.linux-x86_64-3.5/yt/utilities/lib/geometry_utils.c:4:
/usr/lib/gcc/x86_64-redhat-linux/5.1.1/include/stdatomic.h:218:1: sorry, unimplemented: â??_Atomicâ?? with OpenMP
typedef _Atomic struct
^
In file included from /home/alex/Python/include/python3.5m/Python.h:53:0,
from build/src.linux-x86_64-3.5/yt/utilities/lib/geometry_utils.c:4:
/home/alex/Python/include/python3.5m/pyatomic.h:35:5: sorry, unimplemented: â??_Atomicâ?? with OpenMP
_Atomic void *_value;
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from build/src.linux-x86_64-3.5/yt/utilities/lib/geometry_utils.c:242:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: â??_import_arrayâ?? defined but not used [-Wunused-function]
_import_array(void)
^
In file included from /home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/ufuncobject.h:317:0,
from build/src.linux-x86_64-3.5/yt/utilities/lib/geometry_utils.c:243:
/home/alex/Python/lib/python3.5/site-packages/numpy/core/include/numpy/__ufunc_api.h:241:1: warning: â??_import_umathâ?? defined but not used [-Wunused-function]
_import_umath(void)
^error: Command "gcc -pthread -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/alex/Python/lib/python3.5/site-packages/numpy/core/include -I/home/alex/Python/include/python3.5m -c build/src.linux-x86_64-3.5/yt/utilities/lib/geometry_utils.c -o build/temp.linux-x86_64-3.5/build/src.linux-x86_64-3.5/yt/utilities/lib/geometry_utils.o -fopenmp" failed with exit status 1
----------------------------------------
Command "/home/alex/Python/bin/python3.5 -c "import setuptools, tokenize;__file__='/tmp/pip-build-hs37_kd7/yt/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-x8j0pxyo-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-hs37_kd7/yt
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