[yt-users] RadMC3DWriter and Ramses data

[Andrew Myers]

Hi Marc,

In that case, you should be able to try out the PR by doing:

1. Make sure yt is activated
2. cd $YT_DEST/src/yt-hg/
3. hg pull -r 7674674 https://bitbucket.org/atmyers/
4. hg update -C 7674674
5. python setup.py develop

The "-C" option to hg update will wipe any uncommited changes in your
working copy, so be wary.

-Andrew

On Sun, Oct 4, 2015 at 10:57 PM, Marc Schartmann <mschartmann at swin.edu.au>
wrote:

> Thanks a lot.
> I installed the Dev branch via the install script.
>
>
>
>
>
> On 5 Oct 2015, at 2:41 pm, Nathan Goldbaum <nathan12343 at gmail.com> wrote:
>
> There's an open pull request that adds support for actree style outputs to
> the radmc3d exporter:
>
>
> https://bitbucket.org/yt_analysis/yt/pull-requests/1688/wip-adding-support-for-octree-style-output
>
> If you merge that pull request in locally you could try it out. If you
> share how you've set up your yt installation (install script? pip? from a
> mercurial checkout? anaconda?) one of us could give instructions on how to
> test out the PR.
>
> On Sun, Oct 4, 2015 at 10:30 PM, Marc Schartmann <mschartmann at swin.edu.au>
> wrote:
>
>> Dear all,
>>
>> I am trying to export the density distribution from a RAMSES run to
>> RADMC-3D using RadMC3DWriter.
>> Whereas the example with the “StarParticle” data set works perfectly, it
>> fails for any RAMSES data
>> I tried (e.g. the “ramses_mhd_amr” one).
>>
>> Below is the output, complaining about a missing attribute in the RAMSES
>> frontend.
>> I am not a yt expert, any help with how to fix this would be appreciated.
>>
>> Thanks a lot.
>>
>> Best wishes,
>>
>> Marc
>>
>>
>>
>> >>> writer = RadMC3DWriter(ds)
>> yt : [INFO     ] 2015-10-05 14:20:04,236 Loading field plugins.
>> yt : [INFO     ] 2015-10-05 14:20:04,237 Loaded angular_momentum (8 new
>> fields)
>> yt : [INFO     ] 2015-10-05 14:20:04,237 Loaded astro (15 new fields)
>> yt : [INFO     ] 2015-10-05 14:20:04,237 Loaded cosmology (22 new fields)
>> yt : [INFO     ] 2015-10-05 14:20:04,238 Loaded fluid (63 new fields)
>> yt : [INFO     ] 2015-10-05 14:20:04,238 Loaded fluid_vector (95 new
>> fields)
>> yt : [INFO     ] 2015-10-05 14:20:04,239 Loaded geometric (111 new fields)
>> yt : [INFO     ] 2015-10-05 14:20:04,239 Loaded local (111 new fields)
>> yt : [INFO     ] 2015-10-05 14:20:04,239 Loaded magnetic_field (119 new
>> fields)
>> yt : [INFO     ] 2015-10-05 14:20:04,239 Loaded my_plugins (119 new
>> fields)
>> yt : [INFO     ] 2015-10-05 14:20:04,239 Loaded species (121 new fields)
>> Traceback (most recent call last):
>>   File "<stdin>", line 1, in <module>
>>   File
>> "/lustre/projects/p054_swin/marc/galnuc_ramses/yt/yt-x86_64/src/yt-hg/yt/analysis_modules/radmc3d_export/RadMC3DInterface.py",
>> line 148, in __init__
>>     sorted_grids = sorted(ds.index.grids, key=lambda x: x.Level)
>> AttributeError: 'RAMSESIndex' object has no attribute 'grids'
>>
>>
>>
>>
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>>
>>
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