[yt-users] Rollback to yt version 2.x problem

trobolo dinni trobolo.trobolo.dinni5 at gmail.com
Thu Sep 18 16:48:03 PDT 2014


Hi Matt,

in the end I solved the problem by fully reinstalling yt using the script
for the 2.x legacy version. I missed that from the main download page one
can get the script pointing to the older version.

Thanks for the suggestions anyway!

Roberto

On 18 September 2014 21:04, Matthew Turk <matthewturk at gmail.com> wrote:

> Hi Roberto,
>
> I'm not sure what that error means, other than it can't make your
> fKDtree installation work.  One workaround would be to "pip uninstall
> forthon" which will prevent it from trying to compile.  Another would
> be to forcibly update, which may be dangerous if you have made
> modifications to the source:
>
> hg up -C -r yt-2.x
> hg purge
> python2.7 setup.py develop
>
> Stop by IRC if you want to work through this in lower-latency...
>
> -Matt
>
> On Wed, Sep 17, 2014 at 7:24 PM, trobolo dinni
> <trobolo.trobolo.dinni5 at gmail.com> wrote:
> > Dear yt users,
> >
> > recently I updated yt with the update command from version 2 to version
> 3,
> > but (my error) I did not notice all the changes that had been made from
> one
> > to the other version.
> >
> > I tried to rollback to version 2.x following the method suggested in this
> > page of the website http://yt-project.org/docs/dev/installing.html for
> the
> > installation made via the user_script, but when I launche the command
> >
> > python setup.py develop
> >
> > I get the following error:
> >
> > (yt-x86_64)cthulhu at 42828678:~/yt-x86_64/src/yt-hg$ python setup.py
> develop
> > PNG_LOCATION: png.cfg: /home/cthulhu/yt-x86_64/include,
> > /home/cthulhu/yt-x86_64/lib
> > FTYPE_LOCATION: FTYPE found via ctypes in:
> /home/cthulhu/yt-x86_64/include,
> > /home/cthulhu/yt-x86_64/lib
> > HDF5_LOCATION: HDF5 found via ctypes in: /home/cthulhu/yt-x86_64/include,
> > /home/cthulhu/yt-x86_64/lib
> > running develop
> > running build_scripts
> > running egg_info
> > running build_src
> > running build_forthon
> > Building package fKD
> > Traceback (most recent call last):
> >   File "/home/cthulhu/yt-x86_64/bin/Forthon", line 2, in <module>
> >     import Forthon.Forthon_builder
> >   File
> >
> "/home/cthulhu/yt-x86_64/lib/python2.7/site-packages/Forthon/Forthon_builder.py",
> > line 88, in <module>
> >     raise Exception('Main fortran file can not be found, please specify
> > using the fortranfile option')
> > Exception: Main fortran file can not be found, please specify using the
> > fortranfile option
> > Traceback (most recent call last):
> >   File "setup.py", line 281, in <module>
> >     setup_package()
> >   File "setup.py", line 276, in setup_package
> >     'build_src': my_build_src, 'install_data': my_install_data},
> >   File
> >
> "/home/cthulhu/yt-x86_64/lib/python2.7/site-packages/numpy/distutils/core.py",
> > line 169, in setup
> >     return old_setup(**new_attr)
> >   File "/home/cthulhu/yt-x86_64/lib/python2.7/distutils/core.py", line
> 151,
> > in setup
> >     dist.run_commands()
> >   File "/home/cthulhu/yt-x86_64/lib/python2.7/distutils/dist.py", line
> 953,
> > in run_commands
> >     self.run_command(cmd)
> >   File "/home/cthulhu/yt-x86_64/lib/python2.7/distutils/dist.py", line
> 972,
> > in run_command
> >     cmd_obj.run()
> >   File
> >
> "/home/cthulhu/yt-x86_64/lib/python2.7/site-packages/distribute-0.6.32-py2.7.egg/setuptools/command/develop.py",
> > line 27, in run
> >     self.install_for_development()
> >   File
> >
> "/home/cthulhu/yt-x86_64/lib/python2.7/site-packages/numpy/distutils/command/develop.py",
> > line 17, in install_for_development
> >     old_develop.install_for_development(self)
> >   File
> >
> "/home/cthulhu/yt-x86_64/lib/python2.7/site-packages/distribute-0.6.32-py2.7.egg/setuptools/command/develop.py",
> > line 110, in install_for_development
> >     self.run_command('egg_info')
> >   File "/home/cthulhu/yt-x86_64/lib/python2.7/distutils/cmd.py", line
> 326,
> > in run_command
> >     self.distribution.run_command(command)
> >   File "/home/cthulhu/yt-x86_64/lib/python2.7/distutils/dist.py", line
> 972,
> > in run_command
> >     cmd_obj.run()
> >   File
> >
> "/home/cthulhu/yt-x86_64/lib/python2.7/site-packages/numpy/distutils/command/egg_info.py",
> > line 10, in run
> >     self.run_command("build_src")
> >   File "/home/cthulhu/yt-x86_64/lib/python2.7/distutils/cmd.py", line
> 326,
> > in run_command
> >     self.distribution.run_command(command)
> >   File "/home/cthulhu/yt-x86_64/lib/python2.7/distutils/dist.py", line
> 972,
> > in run_command
> >     cmd_obj.run()
> >   File "setup.py", line 192, in run
> >     self.run_command("build_forthon")
> >   File "/home/cthulhu/yt-x86_64/lib/python2.7/distutils/cmd.py", line
> 326,
> > in run_command
> >     self.distribution.run_command(command)
> >   File "/home/cthulhu/yt-x86_64/lib/python2.7/distutils/dist.py", line
> 972,
> > in run_command
> >     cmd_obj.run()
> >   File "setup.py", line 62, in run
> >     subprocess.check_call(cmd, shell=False)
> >   File "/home/cthulhu/yt-x86_64/lib/python2.7/subprocess.py", line 540,
> in
> > check_call
> >     raise CalledProcessError(retcode, cmd)
> > subprocess.CalledProcessError: Command
> > '['/home/cthulhu/yt-x86_64/bin/Forthon', '-F', 'gfortran',
> > '--compile_first', 'fKD_source', '--no2underscores', '--fopt', "'-O3'",
> > 'fKD', 'fKD_source.f90']' returned non-zero exit status 1
> >
> > I would like to ask some suggestions on how to solve the problem.
> >
> > Thanks,
> >                 Roberto
> >
> >
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> >
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