[yt-users] yt-users Digest, Vol 79, Issue 35

Nathan Goldbaum nathan12343 at gmail.com
Fri Sep 26 14:33:53 PDT 2014


Hmm, I guess it's possible that building yt's python failed, and later in
the install script it is trying to install mercurial using the system
python.

Would you mind uploading the full install log somewhere?  Dropbox and
google drive are useful for sharing big files like this over e-mail.

-Nathan

On Fri, Sep 26, 2014 at 2:29 PM, Brandon Bozek <brandon.bozek at gmail.com>
wrote:

> Thanks for the series of replies.
>
> I ran "bash install_script.sh" to start the install. I am able to create
> file/directory in the directory I am in. The install script creates
> ./yt-x86_64/ and downloads a bunch of files before hitting this hiccup.
>
>
> On Fri, Sep 26, 2014 at 5:21 PM, <yt-users-request at lists.spacepope.org>
> wrote:
>
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>> Today's Topics:
>>
>>    1. install error on large cluster (Brandon Bozek)
>>    2. Re: install error on large cluster (Nathan Goldbaum)
>>    3. Re: install error on large cluster (Chris Malone)
>>    4. Re: install error on large cluster (Nathan Goldbaum)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Fri, 26 Sep 2014 17:03:58 -0400
>> From: Brandon Bozek <brandon.bozek at gmail.com>
>> To: yt-users at lists.spacepope.org
>> Subject: [yt-users] install error on large cluster
>> Message-ID:
>>         <CADMUOqetC_YKk6TAiW+YKxSqbm5edmdx7s_t=
>> xS6z+3q4v5W4A at mail.gmail.com>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Hello All,
>>
>> I am trying to install yt on a cluster at my institution and I ran the
>> install script for the stable version and got this error: "error: could
>> not
>> create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':
>> Read-only file system".
>>
>> The last few lines are copied below. Please let me know if I should send
>> anything else.
>>
>> Thanks!
>> Brandon
>>
>> creating build/lib.linux-x86_64-2.7/mercurial/templates/static
>>
>> copying mercurial/templates/static/coal-folder.png ->
>> build/lib.linux-x86_64-2.7/mercurial/templates/static
>>
>> copying mercurial/templates/static/style-gitweb.css ->
>> build/lib.linux-x86_64-2.7/mercurial/templates/static
>>
>> copying mercurial/templates/static/background.png ->
>> build/lib.linux-x86_64-2.7/mercurial/templates/static
>>
>> copying mercurial/templates/static/style-coal.css ->
>> build/lib.linux-x86_64-2.7/mercurial/templates/static
>>
>> copying mercurial/templates/static/hglogo.png ->
>> build/lib.linux-x86_64-2.7/mercurial/templates/static
>>
>> copying mercurial/templates/static/style-paper.css ->
>> build/lib.linux-x86_64-2.7/mercurial/templates/static
>>
>> copying mercurial/templates/static/style.css ->
>> build/lib.linux-x86_64-2.7/mercurial/templates/static
>>
>> copying mercurial/templates/static/excanvas.js ->
>> build/lib.linux-x86_64-2.7/mercurial/templates/static
>>
>> copying mercurial/templates/static/coal-file.png ->
>> build/lib.linux-x86_64-2.7/mercurial/templates/static
>>
>> copying mercurial/templates/static/hgicon.png ->
>> build/lib.linux-x86_64-2.7/mercurial/templates/static
>>
>> copying mercurial/templates/static/mercurial.js ->
>> build/lib.linux-x86_64-2.7/mercurial/templates/static
>>
>> copying mercurial/templates/static/feed-icon-14x14.png ->
>> build/lib.linux-x86_64-2.7/mercurial/templates/static
>>
>> copying mercurial/templates/static/style-monoblue.css ->
>> build/lib.linux-x86_64-2.7/mercurial/templates/static
>>
>> running build_scripts
>>
>> creating build/scripts-2.7
>>
>> copying and adjusting hg -> build/scripts-2.7
>>
>> changing mode of build/scripts-2.7/hg from 644 to 755
>>
>> running install
>>
>> running build
>>
>> running build_mo
>>
>> running build_ext
>>
>> running build_py
>>
>> running build_scripts
>>
>> running install_lib
>>
>> creating /usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial
>>
>> error: could not create
>> '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial': Read-only
>> file system
>> -------------- next part --------------
>> An HTML attachment was scrubbed...
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>> >
>>
>> ------------------------------
>>
>> Message: 2
>> Date: Fri, 26 Sep 2014 14:07:04 -0700
>> From: Nathan Goldbaum <nathan12343 at gmail.com>
>> To: Discussion of the yt analysis package
>>         <yt-users at lists.spacepope.org>
>> Subject: Re: [yt-users] install error on large cluster
>> Message-ID:
>>         <
>> CAJXewOmmu0Oux1FaTFndS4jT_ede0waH3_VdtzeHgKFuELr-oA at mail.gmail.com>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Hi Brandon,
>>
>> How did you invoke the install script?
>>
>> -Nathan
>>
>> On Fri, Sep 26, 2014 at 2:03 PM, Brandon Bozek <brandon.bozek at gmail.com>
>> wrote:
>>
>> > Hello All,
>> >
>> > I am trying to install yt on a cluster at my institution and I ran the
>> > install script for the stable version and got this error: "error: could
>> not
>> > create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':
>> > Read-only file system".
>> >
>> > The last few lines are copied below. Please let me know if I should send
>> > anything else.
>> >
>> > Thanks!
>> > Brandon
>> >
>> > creating build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/coal-folder.png ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/style-gitweb.css ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/background.png ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/style-coal.css ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/hglogo.png ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/style-paper.css ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/style.css ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/excanvas.js ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/coal-file.png ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/hgicon.png ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/mercurial.js ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/feed-icon-14x14.png ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/style-monoblue.css ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > running build_scripts
>> >
>> > creating build/scripts-2.7
>> >
>> > copying and adjusting hg -> build/scripts-2.7
>> >
>> > changing mode of build/scripts-2.7/hg from 644 to 755
>> >
>> > running install
>> >
>> > running build
>> >
>> > running build_mo
>> >
>> > running build_ext
>> >
>> > running build_py
>> >
>> > running build_scripts
>> >
>> > running install_lib
>> >
>> > creating /usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial
>> >
>> > error: could not create
>> > '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':
>> Read-only
>> > file system
>> >
>> > _______________________________________________
>> > yt-users mailing list
>> > yt-users at lists.spacepope.org
>> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> >
>> >
>> -------------- next part --------------
>> An HTML attachment was scrubbed...
>> URL: <
>> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20140926/d5bdd9f2/attachment.htm
>> >
>>
>> ------------------------------
>>
>> Message: 3
>> Date: Fri, 26 Sep 2014 15:18:26 -0600
>> From: Chris Malone <chris.m.malone at gmail.com>
>> To: Discussion of the yt analysis package
>>         <yt-users at lists.spacepope.org>
>> Subject: Re: [yt-users] install error on large cluster
>> Message-ID:
>>         <
>> CAED6uLZnaSBn0z_9T4yzMd1PzQRrT3jUyRU+eWK6tqT3i7XC6A at mail.gmail.com>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Hi Brandon,
>>
>> The 'Read-only file system' part makes me think the issue isn't related to
>> the yt build.  Usually that message happens when the filesystem detected
>> an
>> error and the OS remounts the file system in read-only mode.  Are there
>> any
>> other issues on the FS?  Are you able to manually create a file/directory
>> on that FS?
>>
>> Chris
>>
>> On Fri, Sep 26, 2014 at 3:03 PM, Brandon Bozek <brandon.bozek at gmail.com>
>> wrote:
>>
>> > Hello All,
>> >
>> > I am trying to install yt on a cluster at my institution and I ran the
>> > install script for the stable version and got this error: "error: could
>> not
>> > create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':
>> > Read-only file system".
>> >
>> > The last few lines are copied below. Please let me know if I should send
>> > anything else.
>> >
>> > Thanks!
>> > Brandon
>> >
>> > creating build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/coal-folder.png ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/style-gitweb.css ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/background.png ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/style-coal.css ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/hglogo.png ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/style-paper.css ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/style.css ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/excanvas.js ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/coal-file.png ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/hgicon.png ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/mercurial.js ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/feed-icon-14x14.png ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > copying mercurial/templates/static/style-monoblue.css ->
>> > build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >
>> > running build_scripts
>> >
>> > creating build/scripts-2.7
>> >
>> > copying and adjusting hg -> build/scripts-2.7
>> >
>> > changing mode of build/scripts-2.7/hg from 644 to 755
>> >
>> > running install
>> >
>> > running build
>> >
>> > running build_mo
>> >
>> > running build_ext
>> >
>> > running build_py
>> >
>> > running build_scripts
>> >
>> > running install_lib
>> >
>> > creating /usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial
>> >
>> > error: could not create
>> > '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':
>> Read-only
>> > file system
>> >
>> > _______________________________________________
>> > yt-users mailing list
>> > yt-users at lists.spacepope.org
>> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> >
>> >
>> -------------- next part --------------
>> An HTML attachment was scrubbed...
>> URL: <
>> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20140926/3e9252bd/attachment.htm
>> >
>>
>> ------------------------------
>>
>> Message: 4
>> Date: Fri, 26 Sep 2014 14:20:58 -0700
>> From: Nathan Goldbaum <nathan12343 at gmail.com>
>> To: Discussion of the yt analysis package
>>         <yt-users at lists.spacepope.org>
>> Subject: Re: [yt-users] install error on large cluster
>> Message-ID:
>>         <
>> CAJXewOm4JzsXUGPhDpQ6CfnM1XNkMTR5xDemLx14hivKWy_dPA at mail.gmail.com>
>> Content-Type: text/plain; charset="utf-8"
>>
>> On Fri, Sep 26, 2014 at 2:18 PM, Chris Malone <chris.m.malone at gmail.com>
>> wrote:
>>
>> > Hi Brandon,
>> >
>> > The 'Read-only file system' part makes me think the issue isn't related
>> to
>> > the yt build.  Usually that message happens when the filesystem
>> detected an
>> > error and the OS remounts the file system in read-only mode.  Are there
>> any
>> > other issues on the FS?  Are you able to manually create a
>> file/directory
>> > on that FS?
>> >
>>
>> Note that mercurial is being installed into /usr/local, which should never
>> happen using the install script.  That's why I asked how the install
>> script
>> was being invoked.
>>
>>
>> >
>> > Chris
>> >
>> > On Fri, Sep 26, 2014 at 3:03 PM, Brandon Bozek <brandon.bozek at gmail.com
>> >
>> > wrote:
>> >
>> >> Hello All,
>> >>
>> >> I am trying to install yt on a cluster at my institution and I ran the
>> >> install script for the stable version and got this error: "error:
>> could not
>> >> create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':
>> >> Read-only file system".
>> >>
>> >> The last few lines are copied below. Please let me know if I should
>> send
>> >> anything else.
>> >>
>> >> Thanks!
>> >> Brandon
>> >>
>> >> creating build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >>
>> >> copying mercurial/templates/static/coal-folder.png ->
>> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >>
>> >> copying mercurial/templates/static/style-gitweb.css ->
>> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >>
>> >> copying mercurial/templates/static/background.png ->
>> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >>
>> >> copying mercurial/templates/static/style-coal.css ->
>> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >>
>> >> copying mercurial/templates/static/hglogo.png ->
>> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >>
>> >> copying mercurial/templates/static/style-paper.css ->
>> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >>
>> >> copying mercurial/templates/static/style.css ->
>> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >>
>> >> copying mercurial/templates/static/excanvas.js ->
>> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >>
>> >> copying mercurial/templates/static/coal-file.png ->
>> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >>
>> >> copying mercurial/templates/static/hgicon.png ->
>> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >>
>> >> copying mercurial/templates/static/mercurial.js ->
>> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >>
>> >> copying mercurial/templates/static/feed-icon-14x14.png ->
>> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >>
>> >> copying mercurial/templates/static/style-monoblue.css ->
>> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
>> >>
>> >> running build_scripts
>> >>
>> >> creating build/scripts-2.7
>> >>
>> >> copying and adjusting hg -> build/scripts-2.7
>> >>
>> >> changing mode of build/scripts-2.7/hg from 644 to 755
>> >>
>> >> running install
>> >>
>> >> running build
>> >>
>> >> running build_mo
>> >>
>> >> running build_ext
>> >>
>> >> running build_py
>> >>
>> >> running build_scripts
>> >>
>> >> running install_lib
>> >>
>> >> creating /usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial
>> >>
>> >> error: could not create
>> >> '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':
>> Read-only
>> >> file system
>> >>
>> >> _______________________________________________
>> >> yt-users mailing list
>> >> yt-users at lists.spacepope.org
>> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> >>
>> >>
>> >
>> > _______________________________________________
>> > yt-users mailing list
>> > yt-users at lists.spacepope.org
>> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> >
>> >
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>>
>> ------------------------------
>>
>> Subject: Digest Footer
>>
>> _______________________________________________
>> yt-users mailing list
>> yt-users at lists.spacepope.org
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>
>>
>> ------------------------------
>>
>> End of yt-users Digest, Vol 79, Issue 35
>> ****************************************
>>
>
>
> _______________________________________________
> yt-users mailing list
> yt-users at lists.spacepope.org
> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>
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