[yt-users] YT-3.0 - quick question - teething problems....

John Regan johnanthonyregan at gmail.com
Mon Sep 15 05:46:19 PDT 2014 

OK that seemed to fix the problem and the patient seems much better now.
Thanks!

On Mon, Sep 15, 2014 at 3:18 PM, John Regan <johnanthonyregan at gmail.com>
wrote:

> Yeah I think this is getting closer to the solution now. I reckon I was
> constantly pulling from yt-3.0 - not sure why that happened of course.
>  I've been doing hg log | head and I see the last entry was December last
> year - not good :)
>
> I've now started over and cloned from
> hg clone ssh://hg@bitbucket.org/yt_analysis/yt
>
> hopefully that solve all my troubles (well my YT ones at least....)
>
>
> On Mon, Sep 15, 2014 at 3:02 PM, Britton Smith <brittonsmith at gmail.com>
> wrote:
>
>> Ah, yes, the repo is actually bitbucket.org/yt_analysis/yt
>> The one you have there was the original development repo from a while
>> back.  Since, then development was merged into the main repo (yt, not
>> yt-3.0).
>>
>> You can always do "hg log -l 1" after "hg pull" to see the log of the
>> very latest change in that repo.  yt development happens fast enough that
>> if that the date on that changeset is from more than a month ago, it's
>> likely you're not getting the latest changes.
>>
>> On Mon, Sep 15, 2014 at 12:48 PM, John Regan <johnanthonyregan at gmail.com>
>> wrote:
>>
>>> Running "hg pull" seems to indicate that I am up2date but like you said
>>> there does seem to be a problem with my repos
>>>
>>> (yt-x86_64)[regan at taito-login3 yt-3.0]$ hg pull
>>> pulling from ssh://hg@bitbucket.org/yt_analysis/yt-3.0
>>> searching for changes
>>> no changes found
>>> (yt-x86_64)[regan at taito-login3 yt-3.0]$ hg up yt
>>> 0 files updated, 0 files merged, 0 files removed, 0 files unresolved
>>>
>>> Is there an easy to check if I am on the tip to see if my repos is
>>> actually OK or not?
>>>
>>>
>>> On Mon, Sep 15, 2014 at 2:37 PM, Britton Smith <brittonsmith at gmail.com>
>>> wrote:
>>>
>>>> I think your repo is probably missing most of the latest changes.  Make
>>>> sure you "hg pull" before you do "hg up yt" and python setup.py develop.
>>>>
>>>> On Mon, Sep 15, 2014 at 12:30 PM, John Regan <
>>>> johnanthonyregan at gmail.com> wrote:
>>>>
>>>>> I ran "python setup.py develop" which I think I missed before when
>>>>> trying to switch to the new branch. At the end of the output there are some
>>>>> weird lines:
>>>>>
>>>>> Creating
>>>>> /homeappl/home/regan/appl_taito/YT/Dev-3.0/yt-3.0/doc/yt-x86_64/lib/python2.7/site-packages/yt.egg-link
>>>>> (link to .)
>>>>> yt 2.6dev is already the active version in easy-install.pth
>>>>> Installing yt script to
>>>>> /homeappl/home/regan/appl_taito/YT/Dev-3.0/yt-3.0/doc/yt-x86_64/bin
>>>>> Installing pyro_queue.py script to
>>>>> /homeappl/home/regan/appl_taito/YT/Dev-3.0/yt-3.0/doc/yt-x86_64/bin
>>>>> Installing yt_lodgeit.py script to
>>>>> /homeappl/home/regan/appl_taito/YT/Dev-3.0/yt-3.0/doc/yt-x86_64/bin
>>>>> Installing iyt script to
>>>>> /homeappl/home/regan/appl_taito/YT/Dev-3.0/yt-3.0/doc/yt-x86_64/bin
>>>>>
>>>>> Installed /homeappl/home/regan/appl_taito/YT/Dev-3.0/yt-3.0
>>>>> Processing dependencies for yt==2.6dev
>>>>> Finished processing dependencies for yt==2.6dev
>>>>>
>>>>> It looks like it is updating to the 2.6dev for some reason.
>>>>> The changeset is c53475f4d73a now.
>>>>>
>>>>> The script also still fails in the same way as before - it seems I'm
>>>>> still not on the 3.0 dev branch?
>>>>>
>>>>>
>>>>> On Mon, Sep 15, 2014 at 2:09 PM, Britton Smith <brittonsmith at gmail.com
>>>>> > wrote:
>>>>>
>>>>>> Ah, ok, that changeset is in the yt-3.0 branch, which has been all
>>>>>> but closed.  Development for yt-3.0 has moved to the yt branch.  You'll
>>>>>> need to "hg pull ; hg up yt" and do another "python setup.py develop" and I
>>>>>> think you'll be ok then.
>>>>>>
>>>>>> On Mon, Sep 15, 2014 at 12:05 PM, John Regan <
>>>>>> johnanthonyregan at gmail.com> wrote:
>>>>>>
>>>>>>> The latest I hope :)
>>>>>>>
>>>>>>> (yt-x86_64)[regan at taito-login3 RT]$ yt instinfo
>>>>>>>
>>>>>>> yt module located at:
>>>>>>>     /homeappl/home/regan/appl_
>>>>>>> taito/YT/Dev-3.0/yt-3.0
>>>>>>>
>>>>>>> The current version of the code is:
>>>>>>>
>>>>>>> ---
>>>>>>> 38fff02747ca
>>>>>>> ---
>>>>>>>
>>>>>>> This installation CAN be automatically updated.
>>>>>>> yt dependencies were last updated on
>>>>>>> Mon Sep 15 12:40:51 EEST 2014
>>>>>>>
>>>>>>>
>>>>>>> (yt-x86_64)[regan at taito-login3 RT]$ which pyyt
>>>>>>>
>>>>>>> /homeappl/home/regan/appl_taito/YT/Dev-3.0/yt-3.0/doc/yt-x86_64/bin/pyyt
>>>>>>>
>>>>>>>
>>>>>>> On Mon, Sep 15, 2014 at 2:03 PM, Britton Smith <
>>>>>>> brittonsmith at gmail.com> wrote:
>>>>>>>
>>>>>>>> What changeset of yt are you on?  What do you get with "yt
>>>>>>>> instinfo"?
>>>>>>>>
>>>>>>>> On Mon, Sep 15, 2014 at 11:57 AM, John Regan <
>>>>>>>> johnanthonyregan at gmail.com> wrote:
>>>>>>>>
>>>>>>>>> It 50% works in that case.
>>>>>>>>>
>>>>>>>>> load works but ProfilePlot fails!
>>>>>>>>>
>>>>>>>>>  File "test.py", line 9, in <module>
>>>>>>>>>     prof1d = ProfilePlot(sphere, "radius", "H2I_Fraction")
>>>>>>>>> NameError: name 'ProfilePlot' is not defined
>>>>>>>>>
>>>>>>>>> Totally confused :)
>>>>>>>>>
>>>>>>>>> On Mon, Sep 15, 2014 at 1:54 PM, Britton Smith <
>>>>>>>>> brittonsmith at gmail.com> wrote:
>>>>>>>>>
>>>>>>>>>> Hi John,
>>>>>>>>>>
>>>>>>>>>> D'oh, sorry, that's what I get for trying to answer emails before
>>>>>>>>>> enough coffee.
>>>>>>>>>>
>>>>>>>>>> Question, if you do "from yt.mods import *" and remove the yt
>>>>>>>>>> from yt.load and yt.ProfilePlot, do things work?
>>>>>>>>>>
>>>>>>>>>> Britton
>>>>>>>>>>
>>>>>>>>>> On Mon, Sep 15, 2014 at 10:56 AM, John Regan <
>>>>>>>>>> johnanthonyregan at gmail.com> wrote:
>>>>>>>>>>
>>>>>>>>>>> Hi All,
>>>>>>>>>>>
>>>>>>>>>>> I'm having some teething problems with 3.0.
>>>>>>>>>>> It seems that I have a conflict somewhere but I can't see where.
>>>>>>>>>>> For example I have a very simple script which is doing weird things
>>>>>>>>>>>
>>>>>>>>>>> #Simple simple script
>>>>>>>>>>> import yt
>>>>>>>>>>> filename = "....../RD0000/RD0000"
>>>>>>>>>>> ds = yt.load(filename)
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> This fails with:
>>>>>>>>>>>
>>>>>>>>>>> File "test.py", line 6, in <module>
>>>>>>>>>>>     ds = yt.load(filename)
>>>>>>>>>>> AttributeError: 'module' object has no attribute 'load'
>>>>>>>>>>>
>>>>>>>>>>> If instead I change the script to be:
>>>>>>>>>>>
>>>>>>>>>>> #Simple simple script
>>>>>>>>>>> from yt.mods import *
>>>>>>>>>>> filename = "......../RD0000/RD0000"
>>>>>>>>>>> ds = load(filename)
>>>>>>>>>>> sp = ds.h.sphere('max', (10, 'kpc'))
>>>>>>>>>>> prof1d = ProfilePlot(sphere, "radius", "H2I_Fraction")
>>>>>>>>>>>
>>>>>>>>>>> This now loads the file but fails on:
>>>>>>>>>>>  File "test.py", line 9, in <module>
>>>>>>>>>>>     prof1d = ProfilePlot(sphere, "radius", "H2I_Fraction")
>>>>>>>>>>> NameError: name 'ProfilePlot' is not defined
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> Any ideas what's happening here?
>>>>>>>>>>>
>>>>>>>>>>> Cheers,
>>>>>>>>>>> John
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> (yt-x86_64)[regan at taito-login3 RT]$ yt instinfo
>>>>>>>>>>>
>>>>>>>>>>> yt module located at:
>>>>>>>>>>>     /homeappl/home/regan/appl_taito/YT/Dev-3.0/yt-3.0
>>>>>>>>>>>
>>>>>>>>>>> The current version of the code is:
>>>>>>>>>>>
>>>>>>>>>>> ---
>>>>>>>>>>> 38fff02747ca
>>>>>>>>>>> ---
>>>>>>>>>>>
>>>>>>>>>>> This installation CAN be automatically updated.
>>>>>>>>>>> yt dependencies were last updated on
>>>>>>>>>>> Mon Sep 15 12:40:51 EEST 2014
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> (yt-x86_64)[regan at taito-login3 RT]$ which pyyt
>>>>>>>>>>>
>>>>>>>>>>> /homeappl/home/regan/appl_taito/YT/Dev-3.0/yt-3.0/doc/yt-x86_64/bin/pyyt
>>>>>>>>>>>
>>>>>>>>>>>
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