[yt-users] Trouble with SciPy Install

[Devin Silvia]

Hi Nathan,

For what it's worth, I tried installing Anaconda on the HPCC and then
using that to install yt ("conda install yt").  It seems to have
worked, other than the fact that I run into an error when I import
AbsorptionSpectrum.  I'm not sure what you need yt for, but perhaps
the conda approach will work for you.

-Devin

On Sun, Jan 26, 2014 at 10:24 PM, Nathan Butcher <butchernate at gmail.com> wrote:
> Nathan,
>
> When I copied over the end of the error message to a new file only 50 of the
> 100 lines I tried to copy made it. I have attached file that actually
> contains the last 100 lines which includes the error I mentioned.
>
> Devin,
>
> I am trying to install yt with pip and getting an error stating "Blas
> libraries not found" and telling me that I can set the BLAS environment
> variable to resolve it. The HPCC has a BLAS module but the module help
> command gave me no information so I have contacted the HPCC people about
> that module. I will let you know what I hear back and if I get it working.
>
> Nathan Butcher
>
>
> On Sun, Jan 26, 2014 at 6:53 PM, Nathan Goldbaum <nathan12343 at gmail.com>
> wrote:
>>
>> Hi Nathan,
>>
>> I don't see the error you're referring to in the log file you attached.
>>
>> Can you paste the full install log into an unlimited pastebin
>> (gist.github.com or pastebin.com) and send us the link?
>>
>> Cheers,
>>
>> Nathan Goldbaum
>>
>> On Sunday, January 26, 2014, Devin Silvia <devin.silvia at gmail.com> wrote:
>>>
>>> Hi Nathan,
>>>
>>> I've recently encountered the same issue.  I've tried a number of
>>> things (unsuccessfully).  I'm not entirely sure what it will take to
>>> get things working.  I'll let you know if I manage to solve the issue.
>>>  Please let me know if you manage to do the same.  At some point, it
>>> might be worth talking to the HPCC folks directly.
>>>
>>> Cheers,
>>> Devin
>>>
>>> On Sat, Jan 25, 2014 at 8:18 PM, Desika Narayanan
>>> <desika.narayanan at gmail.com> wrote:
>>> > Does installing yt without scipy and then afterward pip installing
>>> > scipy work?
>>> >
>>> > (This worked for me on a similar problem on an OS X install some time
>>> > ago)
>>> >
>>> >> On Jan 25, 2014, at 5:43 PM, Nathan Butcher <butchernate at gmail.com>
>>> >> wrote:
>>> >>
>>> >> Hello,
>>> >>
>>> >> I am trying to install yt with SciPy on Michigan State University's
>>> >> HPCC system and am running into errors that I cannot resolve by following
>>> >> the instructions in the install script. I have tried uncommenting each of
>>> >> the NUMPY_ARGS statements and had no success. I have attached the log file
>>> >> from my most recent installation attempt as the error message is long. My
>>> >> guess is that it has to do with the "recompile with -fPIC" message but I
>>> >> cannot figure out what that means.
>>> >>
>>> >> Can anybody explain what this error message means and how to resolve
>>> >> it.
>>> >>
>>> >> Thank you,
>>> >> Nathan Butcher
>>> >> <short_yt_install_471.log>
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>>>
>>>
>>> --
>>> Devin W. Silvia
>>> Research Associate
>>> Department of Physics and Astronomy
>>> Michigan State University
>>> www.devinsilvia.com
>>> _______________________________________________
>>> yt-users mailing list
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>>
>>
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-- 
Devin W. Silvia
Research Associate
Department of Physics and Astronomy
Michigan State University
www.devinsilvia.com