[yt-users] Installation problems and support input formats

[John ZuHone]

Hi Andrew,

Sorry for the confusion—we do actually support installing from the install script on Yosemite, but it is not listed—which is our fault!

I just tried a standalone install of yt from the install script, but I could not reproduce your error—the installation of HDF5 passed. It appears that something in your DYLD_LIBRARY_PATH is interfering with the yt installation, which is still odd. Can you have a look at that environment variable (and at LD_LIBRARY_PATH, just in case)?

You can also set the HDF5_DIR environment variable in the script to an existing HDF5 installation.

I’m actually not familiar with ExodusII—I went to the sourceforge page for a quick look but was unable to find much documentation. I know we don’t support it as a format right now, but if it was something you wanted to do we could work with you on it. Could you describe a little bit the data format? Matt’s suggestions in his previous email could go a long way toward this. 

Best,

John

> On Dec 11, 2014, at 10:04 AM, Slaughter, Andrew E <andrew.slaughter at inl.gov> wrote:
> 
> I attempted to install yt using the install script, it failed with the error listed at the end of this message. This is mainly for your information, I am using OSX10.10, which was not listed in the installation preamble, so I am guessing it is not yet supported. I will attempt installing using another method.
> 
> Secondly, does yt support the reading of ExodusII files (http://sourceforge.net/projects/exodusii/ <http://sourceforge.net/projects/exodusii/>)? If not, what code could I look at for adding this support?
> 
> Thanks,
> Andrew
> 
> Installing HDF5
> 
> ********************************************
> 
>         FAILURE REPORT:
> 
> ********************************************
> 
> 
> 
> 		sed -e 's/-L/:/g' -e 's/ //g'`"                               \
> 
> 	 ./H5make_libsettings > H5lib_settings.c  ||                               \
> 
> 	    (test $HDF5_Make_Ignore && echo "*** Error ignored") ||          \
> 
> 	    (rm -f H5lib_settings.c ; exit 1)
> 
> dyld: Library not loaded: libz.so.1.2.8
> 
>   Referenced from: /Users/slauae/Downloads/yt-x86_64/src/hdf5-1.8.11/src/./H5make_libsettings
> 
>   Reason: image not found
> 
> /bin/sh: line 1: 96045 Trace/BPT trap: 5       LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo -L/Users/slauae/Downloads/yt-x86_64/lib/ -L/Users/slauae/Downloads/yt-x86_64/lib64/ -L/Users/slauae/Downloads/yt-x86_64/lib/ -L/Users/slauae/Downloads/yt-x86_64/lib64/ -L/Users/slauae/Downloads/yt-x86_64/lib/ -L/Users/slauae/Downloads/yt-x86_64/lib64/ -L/Users/slauae/Downloads/yt-x86_64/lib/ -L/Users/slauae/Downloads/yt-x86_64/lib64/ |                  	sed -e 's/-L/:/g' -e 's/ //g'`" ./H5make_libsettings > H5lib_settings.c
> 
> make[1]: *** [H5lib_settings.c] Error 1
> 
> make: *** [install-recursive] Error 1
> 
> 
> 
> ********************************************
> 
> ********************************************
> 
> 
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