[yt-users] After updating YT an error occurs

Seyit Hocuk seyit at astro.rug.nl
Thu Sep 12 07:30:56 PDT 2013 

Hi Matt,

It didn't give me the version. But hey, nvm, it's not that important.

Seyit.


yt instinfo

yt module located at:
     /net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg
The supplemental repositories are located at:
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-supplemental

The current version of the code is:

---
b118390aa42c
---

This installation CAN be automatically updated.
Could not determine when yt stack was last updated.





On 09/12/2013 04:23 PM, Matthew Turk wrote:
> Hi Seyit,
>
> We're attempting to consolidate development, but as it stands there
> are three lines of development:
>
>   * Stable
>   * Dev
>   * 3.0
>
> In all likelihood, you are on one of the first two, both of which are
> actually quite stable.  You can find out by looking at the output of
> "yt instinfo" which will give you a branch name in parentheses; this
> will be "yt" (dev), "stable" (stable) or "yt-3.0" (3.0).
>
> -Matt
>
> On Thu, Sep 12, 2013 at 10:22 AM, Seyit Hocuk <seyit at astro.rug.nl> wrote:
>> Yes, thanks. That did the trick.
>> This is not the dev version right?
>>
>> Best,
>> Seyit
>>
>>
>>
>>
>>
>> On 09/12/2013 04:20 PM, Seyit Hocuk wrote:
>>> Hi Matt,
>>>
>>> That seems to have worked. It is installing stuff now.
>>>
>>> Seyit.
>>>
>>>
>>>
>>> On 09/12/2013 04:15 PM, Matthew Turk wrote:
>>>> Hi Seyit,
>>>>
>>>> That's pretty weird.  One more thing to try, and if it doesn't work,
>>>> I'd encourage you to download a new copy of the install script and run
>>>> it *in place* over top of the existing installation.  This will update
>>>> only those dependencies that need to be.
>>>>
>>>> Here's the thing to try:
>>>>
>>>> cd /net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/
>>>> python2.7 distribute_setup.py
>>>> python2.7 setup.py build_ext -i -f
>>>>
>>>> On Thu, Sep 12, 2013 at 10:12 AM, Seyit Hocuk <seyit at astro.rug.nl> wrote:
>>>>> Hi Matt,
>>>>>
>>>>> The commands give me:
>>>>>
>>>>>
>>>>> python2.7 setup.py build_ext -i -f
>>>>> The required version of distribute (>=0.6.32) is not available,
>>>>> and can't be installed while this script is running. Please
>>>>> install a more recent version first, using
>>>>> 'easy_install -U distribute'.
>>>>>
>>>>> (Currently using distribute 0.6.21
>>>>>
>>>>> (/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/distribute-0.6.21-py2.7.egg))
>>>>>
>>>>>
>>>>> python2.7 -c "import yt.utilities.lib.write_array"
>>>>>
>>>>> Traceback (most recent call last):
>>>>>     File "<string>", line 1, in <module>
>>>>>     File "yt/utilities/lib/__init__.py", line 42, in <module>
>>>>>
>>>>>       from .write_array import *
>>>>> ImportError: No module named write_array
>>>>>
>>>>> Best,
>>>>> Seyit
>>>>>
>>>>>
>>>>>
>>>>> On 09/12/2013 04:09 PM, Matthew Turk wrote:
>>>>>> Hi Seyit,
>>>>>>
>>>>>> That's odd.  It should exist in there; the only thing I can think of
>>>>>> is that it may need a full recompilation.  Can you try:
>>>>>>
>>>>>> (activate your environment however, making sure your GNU modules or
>>>>>> whatever are loaded)
>>>>>> cd /net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/
>>>>>> python2.7 setup.py build_ext -i -f
>>>>>>
>>>>>> and then try again?  If you run into the issue once more, the output
>>>>>> from this specific command may help diagnose it:
>>>>>>
>>>>>> python2.7 -c "import yt.utilities.lib.write_array"
>>>>>>
>>>>>> Best,
>>>>>>
>>>>>> Matt
>>>>>>
>>>>>> On Thu, Sep 12, 2013 at 8:42 AM, Seyit Hocuk <seyit at astro.rug.nl>
>>>>>> wrote:
>>>>>>> Hi,
>>>>>>>
>>>>>>> After I update my YT, I get this error when using my script. Probably
>>>>>>> some
>>>>>>> paths are wrong? I included the updater.log.
>>>>>>>
>>>>>>> ./ytmaps.py
>>>>>>> Traceback (most recent call last):
>>>>>>>      File "./ytmaps.py", line 5, in <module>
>>>>>>>        from yt.mods import *
>>>>>>>      File
>>>>>>>
>>>>>>>
>>>>>>> "/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/yt/mods.py",
>>>>>>> line 60, in <module>
>>>>>>>        from yt.data_objects.api import \
>>>>>>>      File
>>>>>>>
>>>>>>>
>>>>>>> "/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/yt/data_objects/api.py",
>>>>>>> line 31, in <module>
>>>>>>>        from grid_patch import \
>>>>>>>      File
>>>>>>>
>>>>>>>
>>>>>>> "/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/yt/data_objects/grid_patch.py",
>>>>>>> line 35, in <module>
>>>>>>>        from yt.data_objects.data_containers import YTFieldData
>>>>>>>      File
>>>>>>>
>>>>>>>
>>>>>>> "/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py",
>>>>>>> line 45, in <module>
>>>>>>>        from yt.data_objects.derived_quantities import
>>>>>>> GridChildMaskWrapper
>>>>>>>      File
>>>>>>>
>>>>>>>
>>>>>>> "/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/yt/data_objects/derived_quantities.py",
>>>>>>> line 36, in <module>
>>>>>>>        from yt.utilities.parallel_tools.parallel_analysis_interface
>>>>>>> import
>>>>>>> \
>>>>>>>      File
>>>>>>>
>>>>>>>
>>>>>>> "/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/yt/utilities/parallel_tools/parallel_analysis_interface.py",
>>>>>>> line 39, in <module>
>>>>>>>        from yt.utilities.lib import \
>>>>>>>      File
>>>>>>>
>>>>>>>
>>>>>>> "/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/yt/utilities/lib/__init__.py",
>>>>>>> line 42, in <module>
>>>>>>>        from .write_array import *
>>>>>>> ImportError: No module named write_array
>>>>>>>
>>>>>>> I use the activate.csh and I don't know which version I was using
>>>>>>> before.
>>>>>>> It
>>>>>>> wasn't that old though.
>>>>>>>
>>>>>>> --
>>>>>>> With kind regards,
>>>>>>> Seyit
>>>>>>>
>>>>>>>
>>>>>>> S. Hocuk
>>>>>>> Postdoctoral Researcher
>>>>>>> Kapteyn Astronomical Institute
>>>>>>> P.O. box 800
>>>>>>> 9700AV Groningen, the Netherlands
>>>>>>>
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> yt-users mailing list
>>>>>>> yt-users at lists.spacepope.org
>>>>>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>>>>>>
>>>>>> _______________________________________________
>>>>>> yt-users mailing list
>>>>>> yt-users at lists.spacepope.org
>>>>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>>>>
>>>>>
>>>>> --
>>>>> With kind regards,
>>>>> Seyit
>>>>>
>>>>>
>>>>> S. Hocuk
>>>>> Postdoctoral Researcher
>>>>> Kapteyn Astronomical Institute
>>>>> P.O. box 800
>>>>> 9700AV Groningen, the Netherlands
>>>>>
>>>
>>
>> --
>> With kind regards,
>> Seyit
>>
>>
>> S. Hocuk
>> Postdoctoral Researcher
>> Kapteyn Astronomical Institute
>> P.O. box 800
>> 9700AV Groningen, the Netherlands
>>


-- 
With kind regards,
Seyit


S. Hocuk
Postdoctoral Researcher
Kapteyn Astronomical Institute
P.O. box 800
9700AV Groningen, the Netherlands

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