[yt-users] After updating YT an error occurs
Seyit Hocuk
seyit at astro.rug.nl
Thu Sep 12 05:42:49 PDT 2013
Hi,
After I update my YT, I get this error when using my script. Probably
some paths are wrong? I included the updater.log.
./ytmaps.py
Traceback (most recent call last):
File "./ytmaps.py", line 5, in <module>
from yt.mods import *
File
"/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/yt/mods.py",
line 60, in <module>
from yt.data_objects.api import \
File
"/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/yt/data_objects/api.py",
line 31, in <module>
from grid_patch import \
File
"/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/yt/data_objects/grid_patch.py",
line 35, in <module>
from yt.data_objects.data_containers import YTFieldData
File
"/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py",
line 45, in <module>
from yt.data_objects.derived_quantities import GridChildMaskWrapper
File
"/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/yt/data_objects/derived_quantities.py",
line 36, in <module>
from yt.utilities.parallel_tools.parallel_analysis_interface import \
File
"/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/yt/utilities/parallel_tools/parallel_analysis_interface.py",
line 39, in <module>
from yt.utilities.lib import \
File
"/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/yt/utilities/lib/__init__.py",
line 42, in <module>
from .write_array import *
ImportError: No module named write_array
I use the activate.csh and I don't know which version I was using
before. It wasn't that old though.
--
With kind regards,
Seyit
S. Hocuk
Postdoctoral Researcher
Kapteyn Astronomical Institute
P.O. box 800
9700AV Groningen, the Netherlands
-------------- next part --------------
pulling from https://bitbucket.org/yt_analysis/yt/
(run 'hg update' to get a working copy)
Updating the repository
Rebuilding modules
Downloading http://pypi.python.org/packages/source/d/distribute/distribute-0.6.32.tar.gz
Extracting in /tmp/tmpiCcwr_
Now working in /tmp/tmpiCcwr_/distribute-0.6.32
Building a Distribute egg in /net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/src/yt-hg/distribute-0.6.32-py2.7.egg
PNG_LOCATION: png.cfg: /net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include, /net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib
FTYPE_LOCATION: freetype.cfg: /net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include, /net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib
HDF5_LOCATION: hdf5.cfg: /net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include, /net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib
running build_ext
running build_src
running build_forthon
fKDpy.so won't be built due to missing Forthon/gfortran
build_src
building py_modules sources
building extension "yt.analysis_modules.halo_finding.fof.EnzoFOF" sources
building extension "yt.analysis_modules.halo_finding.hop.EnzoHop" sources
building extension "yt.frontends.ramses._ramses_reader" sources
building extension "yt.utilities.delaunay._delaunay" sources
building extension "yt.utilities.spatial.ckdtree" sources
building extension "yt.utilities.spatial._distance_wrap" sources
building extension "yt.utilities.lib.CICDeposit" sources
cythonc:> yt/utilities/lib/CICDeposit.c
building extension "yt.utilities.lib.ContourFinding" sources
building extension "yt.utilities.lib.DepthFirstOctree" sources
building extension "yt.utilities.lib.fortran_reader" sources
cythonc:> yt/utilities/lib/fortran_reader.c
building extension "yt.utilities.lib.freetype_writer" sources
building extension "yt.utilities.lib.geometry_utils" sources
cythonc:> yt/utilities/lib/geometry_utils.c
building extension "yt.utilities.lib.Interpolators" sources
building extension "yt.utilities.lib.marching_cubes" sources
cythonc:> yt/utilities/lib/marching_cubes.c
building extension "yt.utilities.lib.misc_utilities" sources
cythonc:> yt/utilities/lib/misc_utilities.c
building extension "yt.utilities.lib.Octree" sources
building extension "yt.utilities.lib.png_writer" sources
cythonc:> yt/utilities/lib/png_writer.c
building extension "yt.utilities.lib.PointsInVolume" sources
building extension "yt.utilities.lib.QuadTree" sources
cythonc:> yt/utilities/lib/QuadTree.c
building extension "yt.utilities.lib.RayIntegrators" sources
building extension "yt.utilities.lib.VolumeIntegrator" sources
cythonc:> yt/utilities/lib/VolumeIntegrator.c
building extension "yt.utilities.lib.grid_traversal" sources
cythonc:> yt/utilities/lib/grid_traversal.c
building extension "yt.utilities.lib.GridTree" sources
cythonc:> yt/utilities/lib/GridTree.c
building extension "yt.utilities.data_point_utilities" sources
building extension "yt.utilities.hdf5_light_reader" sources
building extension "yt.utilities.libconfig_wrapper" sources
building extension "yt.visualization._MPL" sources
building data_files sources
build_src: building npy-pkg config files
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
building 'yt.utilities.lib.CICDeposit' extension
compiling C sources
C compiler: gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/lib/CICDeposit.c
yt/utilities/lib/CICDeposit.c: In function ?__Pyx_GetBuffer?:
yt/utilities/lib/CICDeposit.c:8703: warning: unused variable ?getbuffer_cobj?
yt/utilities/lib/CICDeposit.c: In function ?__Pyx_ReleaseBuffer?:
yt/utilities/lib/CICDeposit.c:8743: warning: unused variable ?releasebuffer_cobj?
yt/utilities/lib/CICDeposit.c: At top level:
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532: warning: ?_import_array? defined but not used
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226: warning: ?_import_umath? defined but not used
gcc -pthread -shared -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ build/temp.linux-x86_64-2.7/yt/utilities/lib/CICDeposit.o -lm -o yt/utilities/lib/CICDeposit.so
building 'yt.utilities.lib.fortran_reader' extension
compiling C sources
C compiler: gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/lib/fortran_reader.c
yt/utilities/lib/fortran_reader.c: In function ?__Pyx_GetBuffer?:
yt/utilities/lib/fortran_reader.c:9169: warning: unused variable ?getbuffer_cobj?
yt/utilities/lib/fortran_reader.c: In function ?__Pyx_ReleaseBuffer?:
yt/utilities/lib/fortran_reader.c:9209: warning: unused variable ?releasebuffer_cobj?
yt/utilities/lib/fortran_reader.c: At top level:
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532: warning: ?_import_array? defined but not used
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226: warning: ?_import_umath? defined but not used
yt/utilities/lib/fortran_reader.c:3578: warning: ?__pyx_f_2yt_9utilities_3lib_14fortran_reader_read_art_vars? defined but not used
gcc -pthread -shared -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ build/temp.linux-x86_64-2.7/yt/utilities/lib/fortran_reader.o -lm -o yt/utilities/lib/fortran_reader.so
building 'yt.utilities.lib.geometry_utils' extension
compiling C sources
C compiler: gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include/python2.7 -c'
extra options: '-fopenmp'
gcc: yt/utilities/lib/geometry_utils.c
yt/utilities/lib/geometry_utils.c: In function ?__Pyx_GetBuffer?:
yt/utilities/lib/geometry_utils.c:10228: warning: unused variable ?getbuffer_cobj?
yt/utilities/lib/geometry_utils.c: In function ?__Pyx_ReleaseBuffer?:
yt/utilities/lib/geometry_utils.c:10268: warning: unused variable ?releasebuffer_cobj?
yt/utilities/lib/geometry_utils.c: At top level:
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532: warning: ?_import_array? defined but not used
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226: warning: ?_import_umath? defined but not used
gcc -pthread -shared -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ build/temp.linux-x86_64-2.7/yt/utilities/lib/geometry_utils.o -lm -o yt/utilities/lib/geometry_utils.so -fopenmp
building 'yt.utilities.lib.marching_cubes' extension
compiling C sources
C compiler: gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/lib/marching_cubes.c
yt/utilities/lib/marching_cubes.c: In function ?__pyx_pf_2yt_9utilities_3lib_14marching_cubes_march_cubes_grid?:
yt/utilities/lib/marching_cubes.c:9730: warning: implicit declaration of function ?offset_fill?
yt/utilities/lib/marching_cubes.c: In function ?__Pyx_GetBuffer?:
yt/utilities/lib/marching_cubes.c:15235: warning: unused variable ?getbuffer_cobj?
yt/utilities/lib/marching_cubes.c: In function ?__Pyx_ReleaseBuffer?:
yt/utilities/lib/marching_cubes.c:15275: warning: unused variable ?releasebuffer_cobj?
yt/utilities/lib/marching_cubes.c: At top level:
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532: warning: ?_import_array? defined but not used
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226: warning: ?_import_umath? defined but not used
yt/utilities/lib/marching_cubes.c:1358: warning: ?__pyx_f_2yt_9utilities_3lib_14marching_cubes_CountTriangles? defined but not used
yt/utilities/lib/marching_cubes.c: In function ?__pyx_pf_2yt_9utilities_3lib_14marching_cubes_march_cubes_grid?:
yt/utilities/lib/marching_cubes.c:9362: warning: ?__pyx_v_nskip? may be used uninitialized in this function
gcc: yt/utilities/lib/FixedInterpolator.c
yt/utilities/lib/FixedInterpolator.c: In function ?offset_interpolate?:
yt/utilities/lib/FixedInterpolator.c:54: warning: unused variable ?i?
yt/utilities/lib/FixedInterpolator.c: At top level:
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532: warning: ?_import_array? defined but not used
gcc -pthread -shared -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ build/temp.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.o build/temp.linux-x86_64-2.7/yt/utilities/lib/FixedInterpolator.o -lm -o yt/utilities/lib/marching_cubes.so
building 'yt.utilities.lib.misc_utilities' extension
compiling C sources
C compiler: gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/lib/misc_utilities.c
yt/utilities/lib/misc_utilities.c: In function ?__Pyx_GetBuffer?:
yt/utilities/lib/misc_utilities.c:11343: warning: unused variable ?getbuffer_cobj?
yt/utilities/lib/misc_utilities.c: In function ?__Pyx_ReleaseBuffer?:
yt/utilities/lib/misc_utilities.c:11383: warning: unused variable ?releasebuffer_cobj?
yt/utilities/lib/misc_utilities.c: At top level:
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532: warning: ?_import_array? defined but not used
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226: warning: ?_import_umath? defined but not used
yt/utilities/lib/misc_utilities.c: In function ?__pyx_pf_2yt_9utilities_3lib_14misc_utilities_6lines?:
yt/utilities/lib/misc_utilities.c:2939: warning: ?__pyx_v_alpha[3]? may be used uninitialized in this function
yt/utilities/lib/misc_utilities.c: In function ?__pyx_pf_2yt_9utilities_3lib_14misc_utilities_18kdtree_get_choices?:
yt/utilities/lib/misc_utilities.c:6150: warning: ?__pyx_v_my_split? may be used uninitialized in this function
gcc -pthread -shared -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ build/temp.linux-x86_64-2.7/yt/utilities/lib/misc_utilities.o -lm -o yt/utilities/lib/misc_utilities.so
building 'yt.utilities.lib.png_writer' extension
compiling C sources
C compiler: gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-DPNG_SETJMP_NOT_SUPPORTED=True -I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include -I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/lib/png_writer.c
yt/utilities/lib/png_writer.c: In function ?__Pyx_GetBuffer?:
yt/utilities/lib/png_writer.c:6512: warning: unused variable ?getbuffer_cobj?
yt/utilities/lib/png_writer.c: In function ?__Pyx_ReleaseBuffer?:
yt/utilities/lib/png_writer.c:6552: warning: unused variable ?releasebuffer_cobj?
yt/utilities/lib/png_writer.c: At top level:
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532: warning: ?_import_array? defined but not used
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226: warning: ?_import_umath? defined but not used
gcc -pthread -shared -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ build/temp.linux-x86_64-2.7/yt/utilities/lib/png_writer.o -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib -lm -lpng -o yt/utilities/lib/png_writer.so
building 'yt.utilities.lib.QuadTree' extension
compiling C sources
C compiler: gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/lib/QuadTree.c
yt/utilities/lib/QuadTree.c: In function ?__Pyx_GetBuffer?:
yt/utilities/lib/QuadTree.c:9880: warning: unused variable ?getbuffer_cobj?
yt/utilities/lib/QuadTree.c: In function ?__Pyx_ReleaseBuffer?:
yt/utilities/lib/QuadTree.c:9920: warning: unused variable ?releasebuffer_cobj?
yt/utilities/lib/QuadTree.c: At top level:
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532: warning: ?_import_array? defined but not used
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226: warning: ?_import_umath? defined but not used
gcc -pthread -shared -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ build/temp.linux-x86_64-2.7/yt/utilities/lib/QuadTree.o -lm -o yt/utilities/lib/QuadTree.so
building 'yt.utilities.lib.VolumeIntegrator' extension
compiling C sources
C compiler: gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/lib/kdtree.c
In file included from /net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include/python2.7/Python.h:8,
from yt/utilities/lib/kdtree.h:29,
from yt/utilities/lib/kdtree.c:32:
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include/python2.7/pyconfig.h:1155:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/stdio.h:28,
from yt/utilities/lib/kdtree.c:28:
/usr/include/features.h:213:1: warning: this is the location of the previous definition
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532: warning: ?_import_array? defined but not used
gcc: yt/utilities/lib/VolumeIntegrator.c
yt/utilities/lib/VolumeIntegrator.c: In function ?__pyx_pf_2yt_9utilities_3lib_16VolumeIntegrator_15PartitionedGrid_8get_isocontour_triangles?:
yt/utilities/lib/VolumeIntegrator.c:11849: warning: implicit declaration of function ?offset_fill?
yt/utilities/lib/VolumeIntegrator.c: In function ?__Pyx_GetBuffer?:
yt/utilities/lib/VolumeIntegrator.c:34241: warning: unused variable ?getbuffer_cobj?
yt/utilities/lib/VolumeIntegrator.c: In function ?__Pyx_ReleaseBuffer?:
yt/utilities/lib/VolumeIntegrator.c:34281: warning: unused variable ?releasebuffer_cobj?
yt/utilities/lib/VolumeIntegrator.c: At top level:
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532: warning: ?_import_array? defined but not used
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226: warning: ?_import_umath? defined but not used
yt/utilities/lib/VolumeIntegrator.c:2403: warning: ?__pyx_f_2yt_9utilities_3lib_16VolumeIntegrator_CountTriangles? defined but not used
yt/utilities/lib/VolumeIntegrator.c: In function ?__pyx_f_2yt_9utilities_3lib_16VolumeIntegrator_15PartitionedGrid_integrate_ray?:
yt/utilities/lib/VolumeIntegrator.c:9210: warning: ?__pyx_v_exit_t? may be used uninitialized in this function
gcc: yt/utilities/lib/healpix_mk_pix2xy.c
gcc: yt/utilities/lib/healpix_pix2ang_nest.c
gcc: yt/utilities/lib/FixedInterpolator.c
yt/utilities/lib/FixedInterpolator.c: In function ?offset_interpolate?:
yt/utilities/lib/FixedInterpolator.c:54: warning: unused variable ?i?
yt/utilities/lib/FixedInterpolator.c: At top level:
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532: warning: ?_import_array? defined but not used
gcc: yt/utilities/lib/healpix_mk_xy2pix.c
gcc: yt/utilities/lib/healpix_pix2vec_nest.c
gcc: yt/utilities/lib/healpix_vec2pix_nest.c
yt/utilities/lib/healpix_vec2pix_nest.c: In function ?vec2pix_nest?:
yt/utilities/lib/healpix_vec2pix_nest.c:56: warning: unused variable ?pi?
gcc: yt/utilities/lib/healpix_ang2pix_nest.c
gcc -pthread -shared -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ build/temp.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.o build/temp.linux-x86_64-2.7/yt/utilities/lib/FixedInterpolator.o build/temp.linux-x86_64-2.7/yt/utilities/lib/kdtree.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_pix2xy.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_vec2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_xy2pix.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_ang2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2vec_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2ang_nest.o -lm -o yt/utilities/lib/VolumeIntegrator.so
building 'yt.utilities.lib.grid_traversal' extension
compiling C sources
C compiler: gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include/python2.7 -c'
extra options: '-fopenmp'
gcc: yt/utilities/lib/kdtree.c
In file included from /net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include/python2.7/Python.h:8,
from yt/utilities/lib/kdtree.h:29,
from yt/utilities/lib/kdtree.c:32:
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include/python2.7/pyconfig.h:1155:1: warning: "_POSIX_C_SOURCE" redefined
In file included from /usr/include/stdio.h:28,
from yt/utilities/lib/kdtree.c:28:
/usr/include/features.h:213:1: warning: this is the location of the previous definition
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532: warning: ?_import_array? defined but not used
gcc: yt/utilities/lib/healpix_mk_pix2xy.c
gcc: yt/utilities/lib/healpix_pix2ang_nest.c
gcc: yt/utilities/lib/FixedInterpolator.c
yt/utilities/lib/FixedInterpolator.c: In function ?offset_interpolate?:
yt/utilities/lib/FixedInterpolator.c:54: warning: unused variable ?i?
yt/utilities/lib/FixedInterpolator.c: At top level:
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532: warning: ?_import_array? defined but not used
gcc: yt/utilities/lib/healpix_mk_xy2pix.c
gcc: yt/utilities/lib/grid_traversal.c
yt/utilities/lib/grid_traversal.c: In function ?__Pyx_GetBuffer?:
yt/utilities/lib/grid_traversal.c:24152: warning: unused variable ?getbuffer_cobj?
yt/utilities/lib/grid_traversal.c: In function ?__Pyx_ReleaseBuffer?:
yt/utilities/lib/grid_traversal.c:24192: warning: unused variable ?releasebuffer_cobj?
yt/utilities/lib/grid_traversal.c: At top level:
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532: warning: ?_import_array? defined but not used
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226: warning: ?_import_umath? defined but not used
gcc: yt/utilities/lib/healpix_pix2vec_nest.c
gcc: yt/utilities/lib/healpix_vec2pix_nest.c
yt/utilities/lib/healpix_vec2pix_nest.c: In function ?vec2pix_nest?:
yt/utilities/lib/healpix_vec2pix_nest.c:56: warning: unused variable ?pi?
gcc: yt/utilities/lib/healpix_ang2pix_nest.c
gcc -pthread -shared -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ build/temp.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.o build/temp.linux-x86_64-2.7/yt/utilities/lib/FixedInterpolator.o build/temp.linux-x86_64-2.7/yt/utilities/lib/kdtree.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_pix2xy.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_vec2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_xy2pix.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_ang2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2vec_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2ang_nest.o -lm -o yt/utilities/lib/grid_traversal.so -fopenmp
building 'yt.utilities.lib.GridTree' extension
compiling C sources
C compiler: gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include -I/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/include/python2.7 -c'
gcc: yt/utilities/lib/GridTree.c
yt/utilities/lib/GridTree.c: In function ?__Pyx_GetBuffer?:
yt/utilities/lib/GridTree.c:6385: warning: unused variable ?getbuffer_cobj?
yt/utilities/lib/GridTree.c: In function ?__Pyx_ReleaseBuffer?:
yt/utilities/lib/GridTree.c:6425: warning: unused variable ?releasebuffer_cobj?
yt/utilities/lib/GridTree.c: At top level:
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1532: warning: ?_import_array? defined but not used
/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy/__ufunc_api.h:226: warning: ?_import_umath? defined but not used
yt/utilities/lib/GridTree.c: In function ?__pyx_f_2yt_9utilities_3lib_8GridTree_Grid_initialize?:
yt/utilities/lib/GridTree.c:1150: warning: ?__pyx_r.index? may be used uninitialized in this function
yt/utilities/lib/GridTree.c:1150: warning: ?__pyx_r.left_edge[0u]? may be used uninitialized in this function
yt/utilities/lib/GridTree.c:1150: warning: ?__pyx_r.left_edge[1u]? may be used uninitialized in this function
yt/utilities/lib/GridTree.c:1150: warning: ?__pyx_r.left_edge[2u]? may be used uninitialized in this function
yt/utilities/lib/GridTree.c:1150: warning: ?__pyx_r.right_edge[0u]? may be used uninitialized in this function
yt/utilities/lib/GridTree.c:1150: warning: ?__pyx_r.right_edge[1u]? may be used uninitialized in this function
yt/utilities/lib/GridTree.c:1150: warning: ?__pyx_r.right_edge[2u]? may be used uninitialized in this function
yt/utilities/lib/GridTree.c:1150: warning: ?__pyx_r.children? may be used uninitialized in this function
gcc -pthread -shared -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/ -L/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib64/ build/temp.linux-x86_64-2.7/yt/utilities/lib/GridTree.o -lm -o yt/utilities/lib/GridTree.so
running scons
Successful!
pulling from https://bitbucket.org/yt_analysis/yt/
(run 'hg heads' to see heads)
Updating the repository
Rebuilding modules
The required version of distribute (>=0.6.32) is not available,
and can't be installed while this script is running. Please
install a more recent version first, using
'easy_install -U distribute'.
(Currently using distribute 0.6.21 (/net/ulubey/data/users/seyit/programmas/yt/yt-x86_64/lib/python2.7/site-packages/distribute-0.6.21-py2.7.egg))
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