[yt-users] install script failure

Elizabeth Tasker tasker at astro1.sci.hokudai.ac.jp
Tue Oct 15 01:32:04 PDT 2013


Hi Nathan,


The stable script works fine, so I'm just going to roll with that one.

(I really needed it to test out for the workshop tomorrow, but if everyone can install the stable version --which is probably the best one to use anyway-- then it's all good!)

Elizabeth


On Oct 15, 2013, at 4:43 PM, Nathan Goldbaum <nathan12343 at gmail.com> wrote:

> Hi Elizabeth,
> 
> I just ran the development install script on my OS X 10.8.5 laptop and didn't run into any issues. 
> 
> Unfortunately I don't think there's enough information in what you pasted to figure out exactly what's going wrong on your end. Can you take a look at yt_install.log and look for anything suspicious?  You could also paste it somewhere (a github gist, pastebin.com, dropbox, google drive, public website, etc...) where one of could look at it.
> 
> If you're interested in yt-3.0, you might try the get_yt.sh script which uses the miniconda python distribution to set up a python environment based on Continuum Analytics' binary python packages.  The script is located in the doc folder at the root of the yt mercurial repo.
> 
> Unfortunately there are some issues with miniconda and the way yt-2.6dev's uses hdf5 in the enzo frontend that preclude using it to conveniently set up 2.6dev on OS X. Matt recently reworked enzo i/o in yt-3.0 and there's a chance these changes will be backported, in which case we may replace the install script completely, since, as you've found here, it is a bit error prone and difficult to maintain.
> 
> Hope that helps,
> 
> Nathan
> 
> 
> 
> -Nathan
> 
> 
> On Tue, Oct 15, 2013 at 12:14 AM, Elizabeth Tasker <tasker at astro1.sci.hokudai.ac.jp> wrote:
> Hi,
> 
> Unfortunately, even with the developer script, I still have problems:
> 
> Installing matplotlib-1.3.0
> matplotlib-1.3.0/lib/matplotlib/tests/baseline_images/test_delaunay/cosine_peak-lin-img.png: (Empty error message)
> tar: Error exit delayed from previous errors.
> ********************************************
>         FAILURE REPORT:
> ********************************************
> 
> copying build/src.macosx-10.4-x86_64-2.7/numpy/core/include/numpy/ufunc_api.txt -> /Users/Elizabeth/yt-x86_64/lib/python2.7/site-packages/numpy/core/include/numpy
> creating /Users/Elizabeth/yt-x86_64/lib/python2.7/site-packages/numpy/core/lib
> creating /Users/Elizabeth/yt-x86_64/lib/python2.7/site-packages/numpy/core/lib/npy-pkg-config
> copying build/src.macosx-10.4-x86_64-2.7/numpy/core/lib/npy-pkg-config/npymath.ini -> /Users/Elizabeth/yt-x86_64/lib/python2.7/site-packages/numpy/core/lib/npy-pkg-config
> copying build/src.macosx-10.4-x86_64-2.7/numpy/core/lib/npy-pkg-config/mlib.ini -> /Users/Elizabeth/yt-x86_64/lib/python2.7/site-packages/numpy/core/lib/npy-pkg-config
> running install_egg_info
> Writing /Users/Elizabeth/yt-x86_64/lib/python2.7/site-packages/numpy-1.7.1-py2.7.egg-info
> running install_clib
> copying build/temp.macosx-10.4-x86_64-2.7/libnpymath.a -> /Users/Elizabeth/yt-x86_64/lib/python2.7/site-packages/numpy/core/lib
> /Users/Elizabeth/yt-x86_64/bin/python2.7: can't open file 'setup.py': [Errno 2] No such file or directory
> 
> ********************************************
> ********************************************
> Failure.  Check /Users/Elizabeth/yt-x86_64/yt_install.log.  The last 10 lines are above.
> 
> 
> Elizabeth
> 
> 
> On Oct 15, 2013, at 12:37 AM, j s oishi <jsoishi at gmail.com> wrote:
> 
>> Hi Elizabeth,
>> 
>> Well, I'm not certain I understand why, but Matt's fix seems to have fixed things for me. Could you test again and let us know if it works for you too?
>> 
>> thanks,
>> 
>> j
>> 
>> 
>> On Mon, Oct 14, 2013 at 8:45 AM, Matthew Turk <matthewturk at gmail.com> wrote:
>> Hi all,
>> 
>> Here's what's going on.
>> 
>> Bleeding Edge => branch "yt-3.0", from the yt_analysis/yt repository
>> Development => branch "yt" from yt_analysis/yt
>> Stable => branch "stable" from yt_analysis/yt
>> 
>> Now, most development of yt-3.0 takes place in the repo
>> "yt_analysis/yt-3.0", and it currently gets pushed in to
>> "yt_analysis/yt" only when a "release" happens.  This was scheduled
>> for tomorrow, and I've just pushed in the current set of changes right
>> now so that this can get resolved today.  This is what caused Jeff's
>> issues with Freetype, but I don't know if that is the same as the
>> distribute_setup.py stuff Elizabeth is seeing.
>> 
>> If you use the "Development" script everything should be fine, I think?
>> 
>> Anyway, like I mentioned, I've pushed in the branch "yt-3.0" changes
>> to the main "yt_analysis/yt" repository, but had to perform a no-op
>> merge of boxlib and rockstar changes that were originally destined for
>> the 2.x branch but got moved to 3.x, which may have confused the repo
>> for a few minutes.  I'll be mostly out of contact for a while at this
>> point, but I think things should be correctly set up now.
>> 
>> -Matt
>> 
>> On Mon, Oct 14, 2013 at 7:51 AM, j s oishi <jsoishi at gmail.com> wrote:
>> > nah, something is funny with it. I will get to the bottom of it this morning
>> > (EDT)
>> >
>> > On Oct 14, 2013 12:46 AM, "Elizabeth Tasker"
>> > <tasker at astro1.sci.hokudai.ac.jp> wrote:
>> >>
>> >> Yes, I did. Maybe that was my downfall.
>> >>
>> >> E.
>> >>
>> >>
>> >> On Oct 14, 2013, at 12:52 PM, j s oishi <jsoishi at gmail.com> wrote:
>> >>
>> >> Yeah, I had this on Friday. Something is funny, and I haven't had a chance
>> >> to figure our what it is. I'll look at it tomorrow. Perchance, did you use
>> >> the bleeding edge link on the new yt website?
>> >>
>> >> On Oct 13, 2013 2:02 AM, "Elizabeth Tasker"
>> >> <tasker at astro1.sci.hokudai.ac.jp> wrote:
>> >>>
>> >>> Hi,
>> >>>
>> >>> I was trying to re-install yt on my macbook and I get:
>> >>>
>> >>> /Users/Elizabeth/yt/bin/python2.7: can't open file
>> >>> '/distribute_setup.py': [Errno 2] No such file or directory
>> >>>
>> >>> … what did I break?
>> >>>
>> >>> Elizabeth
>> >>>
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