[yt-users] Parallel yt on Kraken

Hilary Egan hilaryye at gmail.com
Thu Oct 10 09:49:02 PDT 2013


Unfortunately setting XDG_CONFIG_HOME as the working directory didn't work.
I get this error message http://paste.yt-project.org/show/3941/ which
appears to be the same problem as before.

-Hilary

------------------------------
>
> Hi Hilary,
>
> Yeah ... this is actually a problem with funny home directories and
> Matplotlib 1.3.0.  I think this is a problem specific to machines
> where the home directories aren't visible.  You may be able to either
> set the environment variable XDG_CONFIG_HOME to the working directory
> for some success.
>
> Additionally, I think that yt.pmods no longer works with matplotlib
> 1.3.0, too, but it looks like you're using yt.mods, so that's good.
>
> Could you let us know if that works?
>
> -Matt
>
> On Wed, Oct 9, 2013 at 10:42 PM, Hilary Egan <hilaryye at gmail.com <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>> wrote:
> >* Perhaps inadvisedly I'm trying to get parallel yt to work on kraken. As*>* suggested in the docs faq I made sure I loaded the PrgEnv-gnu module and pip*>* installed mpi4py with env MPICC=cc. Although this worked fine as is on my*>* local machine, yt then complained about missing libraries, I guessed because*>* of some sort of static linking/build problem, so I copied all of the*>* libraries it complained about to $YT_DIR/lib (full list is below). Now it's*>* giving me a completely indecipherable message about matplotlib which I've*>* copied here: http://paste.yt-project.org/show/3939/. <http://paste.yt-project.org/show/3939/> I only see this error*>* when I try and run yt with the --parallel flag, so I'm guessing it must be*>* related. Any advice would be greatly appreciated!*>**>* Thanks,*>* Hilary*>**>* ______*>**>* Missing libraries yt complained about and I added:*>**>* libgfortran.so.3*>* libscicpp_gnu.so.1*>* libsci_gnu_mp.so.1*>* libstdc++.so.6*>* libfttw3.so.3*>* libfftw3f.so.3*>* libmpich_gnu.so.gnu-46-1*>* libmpl.so.0*>* libpmi.so.0*>* libgomp.so.1*>* libquadmath.so.0*>* libmpich.so.1*>* libgcc_s.so.1*>* libportals.so.1*>* libalpsutil.so*>* libalpslli.so*>**>**>* _______________________________________________*>* yt-users mailing list*>* yt-users at lists.spacepope.org <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>*>* http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org  <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>*
>
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20131010/0962990d/attachment.html>


More information about the yt-users mailing list