[yt-users] Scipy installation failure

Yong Zheng yz2505 at columbia.edu
Wed Oct 30 09:10:00 PDT 2013


Dear yt-developers:

I am trying to install scipy by using the install script, but it keeps
failing all the time. Could you help me to check what's wrong with it?
Thank you very much for your help!  Here are the last few lines in the log
file.

Installed
/home/yzheng/yt-x86_64/lib/python2.7/site-packages/distribute-0.6.32-py2.7.egg
Processing dependencies for distribute==0.6.32
Finished processing dependencies for distribute==0.6.32
After install bootstrap.
/home/yzheng/yt-x86_64/lib/python2.7/site-packages/setuptools-0.6c11-py2.7.egg-info
already exists
Searching for pip
Best match: pip 1.4.1
Processing pip-1.4.1-py2.7.egg
pip 1.4.1 is already the active version in easy-install.pth
Installing pip script to /home/yzheng/yt-x86_64/bin
Installing pip-2.7 script to /home/yzheng/yt-x86_64/bin

Using /home/yzheng/yt-x86_64/lib/python2.7/site-packages/pip-1.4.1-py2.7.egg
Processing dependencies for pip
Finished processing dependencies for pip
Running from scipy source directory.
blas_opt_info:
blas_mkl_info:
  libraries mkl,vml,guide not found in ['/home/yzheng/yt-x86_64/lib',
'/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
  NOT AVAILABLE

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in
['/home/yzheng/yt-x86_64/lib', '/usr/local/lib', '/usr/lib',
'/usr/lib/x86_64-linux-gnu']
  NOT AVAILABLE

atlas_blas_info:
  libraries f77blas,cblas,atlas not found in ['/home/yzheng/yt-x86_64/lib',
'/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
  NOT AVAILABLE

/home/yzheng/yt-x86_64/lib/python2.7/site-packages/numpy/distutils/system_info.py:1494:
UserWarning:
    Atlas (http://math-atlas.sourceforge.net/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [atlas]) or by setting
    the ATLAS environment variable.
  warnings.warn(AtlasNotFoundError.__doc__)


Best,
- Yong
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