[yt-users] Parallel yt on Kraken

[Matthew Turk]

Hi Hilary,

Yeah ... this is actually a problem with funny home directories and
Matplotlib 1.3.0.  I think this is a problem specific to machines
where the home directories aren't visible.  You may be able to either
set the environment variable XDG_CONFIG_HOME to the working directory
for some success.

Additionally, I think that yt.pmods no longer works with matplotlib
1.3.0, too, but it looks like you're using yt.mods, so that's good.

Could you let us know if that works?

-Matt

On Wed, Oct 9, 2013 at 10:42 PM, Hilary Egan <hilaryye at gmail.com> wrote:
> Perhaps inadvisedly I'm trying to get parallel yt to work on kraken. As
> suggested in the docs faq I made sure I loaded the PrgEnv-gnu module and pip
> installed mpi4py with env MPICC=cc. Although this worked fine as is on my
> local machine, yt then complained about missing libraries, I guessed because
> of some sort of static linking/build problem, so I copied all of the
> libraries it complained about to $YT_DIR/lib (full list is below). Now it's
> giving me a completely indecipherable message about matplotlib which I've
> copied here: http://paste.yt-project.org/show/3939/. I only see this error
> when I try and run yt with the --parallel flag, so I'm guessing it must be
> related. Any advice would be greatly appreciated!
>
> Thanks,
> Hilary
>
> ______
>
> Missing libraries yt complained about and I added:
>
> libgfortran.so.3
> libscicpp_gnu.so.1
> libsci_gnu_mp.so.1
> libstdc++.so.6
> libfttw3.so.3
> libfftw3f.so.3
> libmpich_gnu.so.gnu-46-1
> libmpl.so.0
> libpmi.so.0
> libgomp.so.1
> libquadmath.so.0
> libmpich.so.1
> libgcc_s.so.1
> libportals.so.1
> libalpsutil.so
> libalpslli.so
>
>
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