[yt-users] EPS.single_plot() interface
John Regan
johnanthonyregan at gmail.com
Wed Nov 6 07:35:51 PST 2013
On 6 November 2013 17:04, John Wise <jwise at physics.gatech.edu> wrote:
> It looks like it's failing when it's making the axes, which might happen
> when the ymin and ymax are the same. Could you print out the _xrange and
> _yrange variables in the axis_box_yt() function in eps_writer.py just
> before the call to self.axis_box()?
>
The ranges seem OK. It fails with the axis error when I use a very low
resolution file and then with the latex error when I switch to a higher
resolution file. In both cases the ranges seem OK.
low res
JR: xrange = (0, 9.781304610151551)
JR: yrange = (0, 9.781304610151551)
high res
JR: xrange = (0, 31.645803611133523)
JR: yrange = (0, 31.645803611133523)
I check the other items now....
> Does the eps_writer work for non-yt calls?
>
> http://paste.yt-project.org/show/4032/
>
> Does eps_writer work for normal slices and projections?
>
> You're doing the correct procedure to patch your version. It doesn't hurt
> to rerun the install script, but it's unnecessary. You could have run
> "python setup.py install" from the yt-hg/ directory instead.
>
> I hope we can pinpoint the cause of the error soon!
>
> Cheers,
> John
>
>
> On 11/06/2013 09:42 AM, John Regan wrote:
>
>> Hey,
>>
>> It failed too.
>>
>> Traceback (most recent call last):
>> File "wise.py", line 9, in <module>
>> ep.save_fig('test', format='eps')
>> File
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/src/yt-
>> hg/yt/visualization/eps_writer.py",
>> line 779, in save_fig
>> self.canvas.writeEPSfile(filename)
>> File
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/lib/
>> python2.7/site-packages/pyx/canvas.py",
>> line 48, in wrappedindocument
>> return method(d, file, **write_kwargs)
>> File
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/lib/
>> python2.7/site-packages/pyx/document.py",
>> line 165, in writeEPSfile
>> pswriter.EPSwriter(self, _outputstream(file, "eps"), **kwargs)
>> File
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/lib/
>> python2.7/site-packages/pyx/pswriter.py",
>> line 140, in __init__
>> page.processPS(pagefile, self, acontext, registry, pagebbox)
>> File
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/lib/
>> python2.7/site-packages/pyx/document.py",
>> line 129, in processPS
>> self._process("processPS", *args)
>> File
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/lib/
>> python2.7/site-packages/pyx/document.py",
>> line 78, in _process
>> bbox.set(self.canvas.bbox()) # this bbox is not accurate
>> File
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/lib/
>> python2.7/site-packages/pyx/canvas.py",
>> line 156, in bbox
>> obbox += cmd.bbox()
>> File
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/lib/
>> python2.7/site-packages/pyx/graph/graph.py",
>> line 181, in bbox
>> self.finish()
>> File
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/lib/
>> python2.7/site-packages/pyx/graph/graph.py",
>> line 311, in finish
>> self.doaxes()
>> File
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/lib/
>> python2.7/site-packages/pyx/graph/graph.py",
>> line 588, in doaxes
>> self.dolayout()
>> File
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/lib/
>> python2.7/site-packages/pyx/graph/graph.py",
>> line 572, in dolayout
>> self.doaxiscreate(axisname)
>> File
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/lib/
>> python2.7/site-packages/pyx/graph/graph.py",
>> line 248, in doaxiscreate
>> self.axes[axisname].create()
>> File
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/lib/
>> python2.7/site-packages/pyx/graph/axis/axis.py",
>> line 586, in create
>> self.canvas = self.axis.create(self.data, self.positioner,
>> self.graphtexrunner, self.errorname)
>> File
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/lib/
>> python2.7/site-packages/pyx/graph/axis/axis.py",
>> line 270, in create
>> return _regularaxis._create(self, data, positioner, graphtexrunner,
>> self.parter, self.rater, errorname)
>> File
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/lib/
>> python2.7/site-packages/pyx/graph/axis/axis.py",
>> line 202, in _create
>> raise RuntimeError("no axis partitioning found%s" % errorname)
>> RuntimeError: no axis partitioning found for axis y2
>>
>>
>> Again on the save(). As I understand YT is set up to be somewhat machine
>> independent in that all libraries are contained in the YT installation -
>> in this case the PyX.
>> I wonder then could there be something in my dev version of YT that is
>> screwed up.
>>
>> Just to confirm what I need to do when I pull down your patch.
>>
>> cd .../yt-x86_64/src/yt-hg
>> hg pull -r 49a5b85 https://bitbucket.org/jwise77/yt-clean
>> hg update
>>
>> I then removed the done file and reran the install script. That may not
>> have been necessary though - I'm not sure.
>>
>> Maybe I should try pulling your patch down onto my stable version?
>>
>> John
>>
>>
>>
>>
>> On 6 November 2013 16:28, John Wise <jwise at physics.gatech.edu
>> <mailto:jwise at physics.gatech.edu>> wrote:
>>
>> That version should be fine. I just used that version on my *buntu
>> 13.10 machine. It also worked on a 13.04 machine with an old svn
>> checkout (before 0.12) of PyX.
>>
>> As a warning, don't use the PyX svn repository because since July or
>> August, it's only compatible with Python 3.
>>
>> Could you try this script to see if it works for you? It works on
>> two of my computers.
>>
>> http://paste.yt-project.org/__show/4031/
>>
>> <http://paste.yt-project.org/show/4031/>
>>
>> Thanks,
>> John
>>
>>
>> On 11/06/2013 09:13 AM, John Regan wrote:
>>
>> Version Info:
>>
>> Metadata-Version: 1.1
>> Name: PyX
>> Version: 0.12.1
>> Summary: Python package for the generation of PostScript and PDF
>> files
>> Home-page: http://pyx.sourceforge.net/
>> Author: Jörg Lehmann, André Wobst
>>
>>
>> Maybe an upgrade is needed?
>>
>>
>> On 6 November 2013 16:09, John Wise <jwise at physics.gatech.edu
>> <mailto:jwise at physics.gatech.edu>
>> <mailto:jwise at physics.gatech.__edu
>> <mailto:jwise at physics.gatech.edu>>> wrote:
>>
>> Hi John,
>>
>> Which version of PyX are you running?
>>
>> Thanks,
>> John
>>
>>
>> On 11/06/2013 09:08 AM, John Regan wrote:
>>
>> Hi John,
>>
>> I pulled down your update onto my Dev installation and
>> ran it.
>> The eps
>> writer now successfully takes as input the plot window
>> but fails on
>> saving the plot.
>> Any ideas? The error is below.
>>
>> Cheers,
>> John
>>
>>
>>
>>
>> Traceback (most recent call last):
>> File
>>
>> "/homeappl/home/regan/appl_____taito/YT/Dev/yt-x86_64/lib/__
>> __python2.7/threading.py",
>>
>>
>> line 810, in __bootstrap_inner
>> self.run()
>> File
>>
>> "/homeappl/home/regan/appl_____taito/YT/Dev/yt-x86_64/lib/__
>> __python2.7/site-packages/pyx/____text.py",
>>
>>
>> line 663, in run
>> raise RuntimeError("TeX/LaTeX finished
>> unexpectedly")
>> RuntimeError: TeX/LaTeX finished unexpectedly
>>
>> still waiting for tex after 5 (of 60) seconds...
>> still waiting for tex after 10 (of 60) seconds...
>> still waiting for tex after 15 (of 60) seconds...
>> still waiting for tex after 20 (of 60) seconds...
>> still waiting for tex after 25 (of 60) seconds...
>> still waiting for tex after 30 (of 60) seconds...
>> still waiting for tex after 35 (of 60) seconds...
>> still waiting for tex after 40 (of 60) seconds...
>> still waiting for tex after 45 (of 60) seconds...
>> still waiting for tex after 50 (of 60) seconds...
>> still waiting for tex after 55 (of 60) seconds...
>> the timeout of 60 seconds expired and tex did not
>> respond.
>> We try to finish the dvi due to an unhandled tex error
>> Traceback (most recent call last):
>> File "OffAxisProjection.py", line 74, in <module>
>> ep.save_fig("test", format="eps")
>> File
>>
>> "/homeappl/home/regan/appl_____taito/YT/Dev/yt-x86_64/src/
>> yt-____hg/yt/visualization/eps_____writer.py",
>> line 779, in save_fig
>> self.canvas.writeEPSfile(____filename)
>>
>>
>>
>>
>> On 5 November 2013 22:44, John Wise
>> <jwise at physics.gatech.edu <mailto:jwise at physics.gatech.edu>
>> <mailto:jwise at physics.gatech.__edu
>> <mailto:jwise at physics.gatech.edu>>
>> <mailto:jwise at physics.gatech.
>> <mailto:jwise at physics.gatech.>____edu
>>
>>
>> <mailto:jwise at physics.gatech.__edu
>> <mailto:jwise at physics.gatech.edu>>>> wrote:
>>
>> Hi John,
>>
>> Thanks for bringing this to our attention. I've
>> done the same
>> workaround with eps_writer before, and it's a
>> pain! It
>> seems like
>> the eps_writer was never compatible with off-axis
>> projections.
>> Plus, it hasn't been updated to be compatible with
>> PlotWindows.
>>
>> I've made the necessary changes to eps_writer so
>> it works
>> with plot
>> windows now. I've tested it with slices,
>> projections, off-axis
>> projections, and phase plots, and they now work as
>> desired.
>>
>> I've submitted a PR, but if you want to test it
>> out before it's
>> merged, please go ahead!
>>
>> hg pull -r 49a5b85
>> https://bitbucket.org/jwise77/______yt-clean
>> <https://bitbucket.org/jwise77/____yt-clean>
>> <https://bitbucket.org/__jwise77/__yt-clean
>> <https://bitbucket.org/jwise77/__yt-clean>>
>>
>> <https://bitbucket.org/____jwise77/yt-clean
>> <https://bitbucket.org/__jwise77/yt-clean>
>>
>>
>> <https://bitbucket.org/__jwise77/yt-clean
>> <https://bitbucket.org/jwise77/yt-clean>>>
>> hg update
>>
>> Let me know if this works for you.
>>
>> Cheers,
>> John
>>
>>
>> On 11/05/2013 10:13 AM, John Regan wrote:
>>
>> Hi All,
>>
>>
>> I've been playing with the eps interface a
>> little to
>> decorate some
>> plots. It's a very nice feature but I haven't
>> been able
>> to get in to
>> work with the output from
>> OffAxisProjectionPlot() or
>> off_axis_projection(). Basically I call one of
>> these
>> functions,
>> produce
>> a nice projection and would like to pass that
>> object to
>> eps.single_plot
>> and make some modifications.
>>
>> The problem is that PWViewrMPL object has no
>> colorbar
>> attribute
>> and so
>> when insert_image_yt() gets called the script
>> fails as
>> it tries to
>> access this attribute. I can workaround the
>> issue by
>> creating the
>> projection and converting the image to jpg and
>> passing
>> the jpg
>> image to
>> insert_image() and it works great but it's not
>> very
>> clean. It
>> would be
>> nice to pass the PWViewrMPL object in somehow.
>>
>> Just wondering if another wrapper function is
>> needed or
>> if there
>> is an
>> even easier way that I am missing.
>>
>> Cheers,
>> John
>>
>>
>>
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>> --
>> John Wise
>> Assistant Professor of Physics
>> Center for Relativistic Astrophysics, Georgia Tech
>> http://cosmo.gatech.edu
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>> --
>> John Wise
>> Assistant Professor of Physics
>> Center for Relativistic Astrophysics, Georgia Tech
>> http://cosmo.gatech.edu
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>> --
>> John Wise
>> Assistant Professor of Physics
>> Center for Relativistic Astrophysics, Georgia Tech
>> http://cosmo.gatech.edu
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> John Wise
> Assistant Professor of Physics
> Center for Relativistic Astrophysics, Georgia Tech
> http://cosmo.gatech.edu
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