[yt-users] [yt-dev] Announcing: yt 2.5.3

Tue Jun 4 00:17:01 PDT 2013

Hi Nathan

Thanks for the report. Going from 12.04 to 12.10 the HDF5 library was
apparently renamed to libhdf5-7, instead of libhdf5-serial-1.8.4. I've
added libhdf5-7 as an alternative install dependency. The package is
rebuilding on launchpad right now. Could you please try again once it's
done (probably in a couple of hours)?

Thanks,

Mike

On Mon, Jun 3, 2013 at 10:05 PM, Nathan Goldbaum <nathan12343 at gmail.com>wrote:

> Hey Mike,
>
> Looks like it fails on 13.04.  FWIW, the serial hdf5 package appears to be
> called libhdf5-7.  If anyone else has success, let me know, it's possible
> I'm doing something silly.
>
> -Nathan
>
> $ sudo apt-get install yt
> Reading package lists... Done
> Building dependency tree
> Reading state information... Done
> Some packages could not be installed. This may mean that you have
> requested an impossible situation or if you are using the unstable
> distribution that some required packages have not yet been created
> or been moved out of Incoming.
> The following information may help to resolve the situation:
>
> The following packages have unmet dependencies:
>  yt : Depends: libhdf5-serial-1.8.4 but it is not installable
>       Recommends: python-matplotlib (>= 1.1.0) but it is not going to be
> installed
>       Recommends: python-pyx (>= 0.11.1) but it is not going to be
> installed
>       Recommends: ipython (>= 0.12.1) but it is not going to be installed
>       Recommends: ipython-notebook (>= 0.12.1) but it is not going to be
> installed
>       Recommends: forthon (>= 0.8.11) but it is not going to be installed
> E: Unable to correct problems, you have held broken packages.
>
> $ apt-cache search libhdf5
> libhdf5-7 - Hierarchical Data Format 5 (HDF5) - runtime files - serial
> version
> libhdf5-7-dbg - Hierarchical Data Format 5 (HDF5) - Debug package
> libhdf5-dev - Hierarchical Data Format 5 (HDF5) - development files -
> serial version
> libhdf5-doc - Hierarchical Data Format 5 (HDF5) - Documentation
> libhdf5-mpi-dev - Hierarchical Data Format 5 (HDF5) - development files -
> MPICH2 version
> libhdf5-mpich2-7 - Hierarchical Data Format 5 (HDF5) - runtime files -
> MPICH2 version
> libhdf5-mpich2-7-dbg - Hierarchical Data Format 5 (HDF5) - Mpich2 Debug
> package
> libhdf5-mpich2-dev - Hierarchical Data Format 5 (HDF5) - development files
> - MPICH2 version
> libhdf5-openmpi-7 - Hierarchical Data Format 5 (HDF5) - runtime files -
> OpenMPI version
> libhdf5-openmpi-7-dbg - Hierarchical Data Format 5 (HDF5) - OpenMPI Debug
> package
> libhdf5-openmpi-dev - Hierarchical Data Format 5 (HDF5) - development
> files - OpenMPI version
> libhdf5-serial-dev - Hierarchical Data Format 5 (HDF5) - development files
> - transitionnal package
>
>
>
>
>
> On Mon, Jun 3, 2013 at 9:54 PM, Michael Kuhlen <mqk at astro.berkeley.edu>wrote:
>
>> Great! I've repackaged this release in my Ubuntu PPA (
>> http://ppa.launchpad.net/kuhlen/ppa/ubuntu).
>>
>> Btw, I've now also copied the packages over to Quantal Quetzal (12.10)
>> and Raring Ringtail (13.04), so they should work there too. However, since
>> I'm still on 12.04 I haven't been able to try them out myself. Please
>> report back if you encounter problems.
>>
>> Mike
>>
>>
>>
>> On Mon, Jun 3, 2013 at 1:42 PM, Matthew Turk <matthewturk at gmail.com>wrote:
>>
>>> Hi all,
>>>
>>> We're proud to release yt version 2.5.3.  This is a scheduled point
>>> release that includes all bug fixes identified and fixed since the
>>> release of 2.5.2 on May 1.
>>>
>>> Additions, changes and bug fixes include:
>>>
>>>   * yt can now export to RADMC3D
>>>   * Athena frontend now supports Static Mesh Refinement and units (
>>> http://hub.yt-project.org/nb/7l1zua )
>>>   * PlotWindows now have a set_font function and a new default font
>>> setting
>>>   * Colorbars less likely to extend off the edge of a PlotWindow
>>>   * Clumps overplotted on PlotWindows are now correctly contoured
>>>   * Allsky projections and HEALpix camera now correctly use four
>>> channels (RGBA)
>>>   * Many fixes to light ray and profiles for integrated cosmological
>>> analysis
>>>   * Improvements to OpenMP compilation
>>>   * Typo in value for km_per_pc (not used elsewhere in the code base)
>>> has been fixed
>>>   * Enable parallel IPython notebook sessions (
>>> http://hub.yt-project.org/nb/qgn19h )
>>>   * Change (~1e-6) to particle_density deposition, enabling it to be
>>> used by FLASH and other frontends
>>>   * Addition of is_root function for convenience in parallel analysis
>>> sessions
>>>   * Additions to Orion particle reader
>>>   * Fix long-standing bug for plotting arrays with range of zero
>>>   * Fixing TotalMass for case when particles not present
>>>   * Fixing the density threshold or HOP and pHOP to match the merger tree
>>>   * Reason can now plot with latest plot window
>>>   * Adding option to have interpolation based on non-uniform bins in
>>> interpolator code
>>>   * Issues with VelocityMagnitude and aliases with velo have been
>>> corrected in the FLASH frontend
>>>   * Halo radii are calculated correctly for domains that do not start at
>>> 0,0,0.
>>>   * Halo mass function now works for non-Enzo frontends.
>>>   * Bug fixes for directory creation, typos in docstrings
>>>
>>> If you are using the stable branch of yt from an installation script,
>>> you can upgrade using "yt update" or "yt update --all" to upgrade your
>>> full dependency stack.  If you are using the development branch, you
>>> may already have these fixes.  A tarball of this release has been
>>> uploaded to the Python Package Index (PyPI).
>>>
>>> This release includes a total of over 150 changesets, contributed over
>>> the course of nearly 40 pull requests by over a dozen individuals.
>>> The next scheduled release will be on July 1, and will be version 2.6.
>>>  We are hoping to include a unification of the Boxlib frontends,
>>> compatibility with Python 3 (and embedding inside Blender) and other
>>> usual improvements to the yt codebase.
>>>
>>> Documentation for this release can be found at:
>>>
>>> http://yt-project.org/docs/dev/
>>>
>>> Thanks very much,
>>>
>>> Matt, on behalf of the yt development team
>>> _______________________________________________
>>> yt-dev mailing list
>>> yt-dev at lists.spacepope.org
>>> http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
>>>
>>
>>
>>
>> --
>> ------------------------------
>>
>> Dr. Michael Kuhlen
>> Theoretical Astrophysics Center
>> UC Berkeley
>>
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>>
>>
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-- 
------------------------------

Dr. Michael Kuhlen
Theoretical Astrophysics Center
UC Berkeley
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