[yt-users] Error on installation of yt on system python
trobolo dinni
trobolo.trobolo.dinni5 at gmail.com
Sun Feb 24 17:29:09 PST 2013
Hi all,
sorry for the delay in replying and thanks for the help! :)
@ Kacper
If I run the command you suggested in the YT egg directory i get:
*cthulhu at 42828678:/usr/local/bin/yt-hg$ find . -name
"data_point_utilities.*"*
*./yt/utilities/data_point_utilities.c*
*./build/lib.linux-x86_64-2.7/yt/utilities/data_point_utilities.so*
*./build/temp.linux-x86_64-2.7/yt/utilities/data_point_utilities.o*
Also, I attached the build log as "output.txt", I am using Ubuntu release
12.10.
@Michael
Okay by just doing 'sudo add-apt-repository ppa:kuhlen/ppa', then going
into python and typing 'from yt.mods import *' seems to work fine. I still
didn't test yt anyway, I will let you know if something goes wrong again!
Thank you very much for the help again,
Roberto
On 21 February 2013 07:47, Michael Kuhlen <mqk at astro.berkeley.edu> wrote:
> Yeah, I did figure out the problem. It's that the debian/ubuntu packaging
> program dpkg-source doesn't include newly created empty files into the diff
> that it uses to build the updated package:
>
> dpkg-source: warning: newly created empty file
> 'yt/frontends/_skeleton/misc.py' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'yt/frontends/_skeleton/definitions.py' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'yt/frontends/athena/misc.py' will not be represented in diff
> dpkg-source: warning: newly created empty file
> 'yt/frontends/athena/__init__.py' will not be represented in diff
>
> The last one is the culprit, because as a result the athena/__init__.py
> file doesn't make it into the package, and hence the import fails. Arrgh.
>
> For the life of me I couldn't figure out how to force dpkg-source to
> include those newly created empty files, and so in the end I opted for the
> slightly hackish fix of adding a comment ("### comment to allow inclusion
> in dpkg-source diff file.") to those files. Now the package works, and I've
> just uploaded it to my PPA. Should be available in a few hours, once it's
> built.
>
> Cheers,
>
> Mike
>
>
> On Wed, Feb 20, 2013 at 11:25 AM, Matthew Turk <matthewturk at gmail.com>wrote:
>
>> Hey Mike,
>>
>> I just verified, and in stable we *do* add Athena as a subpackage, so
>> I think this should be working. Any ideas as to what might be
>> different between the install and the deb?
>>
>> -MAtt
>>
>> On Wed, Feb 20, 2013 at 2:23 PM, Michael Kuhlen <mqk at astro.berkeley.edu>
>> wrote:
>> > OK, the updated Ubuntu packages are available. I just tried them out on
>> my
>> > ubuntu 12.04.2 LTS and yt-devel works great. With the stable version
>> (yt) I
>> > get an import error:
>> >
>> > In [1]: from yt.mods import *
>> >
>> ---------------------------------------------------------------------------
>> > ImportError Traceback (most recent call
>> last)
>> > <ipython-input-1-c31905f7fc2e> in <module>()
>> > ----> 1 from yt.mods import *
>> >
>> > /usr/lib/pymodules/python2.7/yt/mods.py in <module>()
>> > 97 GDFStaticOutput, GDFFieldInfo, add_gdf_field
>> > 98
>> > ---> 99 from yt.frontends.athena.api import \
>> > 100 AthenaStaticOutput, AthenaFieldInfo, add_athena_field
>> > 101
>> >
>> > ImportError: No module named athena.api
>> >
>> >
>> > This is weird, because when I install that exact same changeset
>> > (329d11eeff22) from source (with python ./setup.py develop
>> > --prefix=$HOME/local) it works just fine. I'll have to investigate. But
>> if
>> > you're ok with using the development package (yt-devel), then you
>> should be
>> > good to go.
>> >
>> > Mike
>> >
>> >
>> >
>> >
>> > On Wed, Feb 20, 2013 at 2:02 AM, Michael Kuhlen <mqk at astro.berkeley.edu
>> >
>> > wrote:
>> >>
>> >> Hi Roberto
>> >>
>> >> I'm the maintainer of that ubuntu PPA, sorry you're having trouble with
>> >> it. I think maybe all you need to do is to run 'sudo add-apt-repository
>> >> ppa:kuhlen/ppa'. Note the trailing '/ppa'. Can you give that a try?
>> >>
>> >> Otherwise, can you look under /etc/apt/sources.list.d/ and see if
>> there's
>> >> a file named 'kuhlen-ppa-precise.list'? If there is, what is its
>> content?
>> >>
>> >> I've been a bit remiss in keeping these packages up-to-date, but
>> spurned
>> >> by your email I just re-packaged updates to the most recent versions
>> (yt:
>> >> 329d11eeff22, yt-devel: 09a0fd75818b). Should be available there some
>> time
>> >> tomorrow.
>> >>
>> >> Cheers,
>> >> Mike
>> >>
>> >>
>> >>
>> >>
>> >> On Tue, Feb 19, 2013 at 11:32 PM, Kacper Kowalik <
>> xarthisius.kk at gmail.com>
>> >> wrote:
>> >>>
>> >>> On 02/18/2013 12:58 AM, trobolo dinni wrote:
>> >>> > Hi Nathan,
>> >>> >
>> >>> > sorry for the delay in replying.
>> >>> >
>> >>> > To install yt on the system python I followed the procedure you
>> >>> > mentioned:
>> >>> > entered the yt directory cloned from bitbucket, run "python setup.py
>> >>> > install".
>> >>> > I did that again to check another time but the error persists.
>> >>> >
>> >>> > As I said I just reinstalled the same Ubuntu version on the same
>> >>> > computer
>> >>> > where before yt was usually installed by following the procedure
>> above
>> >>> > and
>> >>> > it was normally running.
>> >>> >
>> >>> > Could reinstall cython help to solve the problem?
>> >>> >
>> >>> > Thanks,
>> >>> > Roberto
>> >>>
>> >>> Hi Roberto,
>> >>> could you run the following command in your $YT_HG directory:
>> >>>
>> >>> find . -name "data_point_utilities.*"
>> >>>
>> >>> and post the output? Also if you could try installing again but
>> provide
>> >>> us with build.log.gz from:
>> >>>
>> >>> cd $YT_HG
>> >>> bash ./clean.sh
>> >>> python setup.py build | gzip --fast > build.log.gz
>> >>>
>> >>> What version of ubuntu are you using?
>> >>> Cheers,
>> >>> Kacper
>> >>>
>> >>>
>> >>>
>> >>> _______________________________________________
>> >>> yt-users mailing list
>> >>> yt-users at lists.spacepope.org
>> >>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> >>>
>> >>
>> >>
>> >>
>> >> --
>> >> *********************************************************************
>> >> * *
>> >> * Dr. Michael Kuhlen Theoretical Astrophysics Center *
>> >> * email: mqk at astro.berkeley.edu UC Berkeley *
>> >> * cell phone: (831) 588-1468 B-116 Hearst Field Annex # 3411 *
>> >> * skype username: mikekuhlen Berkeley, CA 94720 *
>> >> * *
>> >> *********************************************************************
>> >
>> >
>> >
>> >
>> > --
>> > *********************************************************************
>> > * *
>> > * Dr. Michael Kuhlen Theoretical Astrophysics Center *
>> > * email: mqk at astro.berkeley.edu UC Berkeley *
>> > * cell phone: (831) 588-1468 B-116 Hearst Field Annex # 3411 *
>> > * skype username: mikekuhlen Berkeley, CA 94720 *
>> > * *
>> > *********************************************************************
>> >
>> > _______________________________________________
>> > yt-users mailing list
>> > yt-users at lists.spacepope.org
>> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> >
>> _______________________________________________
>> yt-users mailing list
>> yt-users at lists.spacepope.org
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>
>
>
>
> --
> *********************************************************************
> * *
> * Dr. Michael Kuhlen Theoretical Astrophysics Center *
> * email: mqk at astro.berkeley.edu UC Berkeley *
> * cell phone: (831) 588-1468 B-116 Hearst Field Annex # 3411 *
> * skype username: mikekuhlen Berkeley, CA 94720 *
> * *
> *********************************************************************
>
> _______________________________________________
> yt-users mailing list
> yt-users at lists.spacepope.org
> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>
>
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non-existing path in 'yt/utilities': 'kdtree/fKDpy.so'
PNG_LOCATION: png found in: /usr/include, /usr/lib
FTYPE_LOCATION: freetype found in: /usr/include, /usr/lib
HDF5_LOCATION: hdf5.cfg: /usr/lib/include, /usr/lib/lib
non-existing path in 'yt/utilities': '/usr/lib/lib'
non-existing path in 'yt/utilities': '/usr/lib/include'
running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building py_modules sources
building extension "yt.analysis_modules.halo_finding.fof.EnzoFOF" sources
building extension "yt.analysis_modules.halo_finding.hop.EnzoHop" sources
building extension "yt.frontends.ramses._ramses_reader" sources
building extension "yt.utilities.delaunay._delaunay" sources
building extension "yt.utilities.spatial.ckdtree" sources
building extension "yt.utilities.spatial._distance_wrap" sources
building extension "yt.utilities.lib.CICDeposit" sources
building extension "yt.utilities.lib.ContourFinding" sources
building extension "yt.utilities.lib.DepthFirstOctree" sources
building extension "yt.utilities.lib.fortran_reader" sources
building extension "yt.utilities.lib.freetype_writer" sources
building extension "yt.utilities.lib.geometry_utils" sources
building extension "yt.utilities.lib.Interpolators" sources
building extension "yt.utilities.lib.marching_cubes" sources
building extension "yt.utilities.lib.misc_utilities" sources
building extension "yt.utilities.lib.Octree" sources
building extension "yt.utilities.lib.png_writer" sources
building extension "yt.utilities.lib.PointsInVolume" sources
building extension "yt.utilities.lib.QuadTree" sources
building extension "yt.utilities.lib.RayIntegrators" sources
building extension "yt.utilities.lib.VolumeIntegrator" sources
building extension "yt.utilities.lib.grid_traversal" sources
building extension "yt.utilities.lib.GridTree" sources
building extension "yt.utilities.data_point_utilities" sources
building extension "yt.utilities.hdf5_light_reader" sources
building extension "yt.utilities.libconfig_wrapper" sources
building extension "yt.visualization._MPL" sources
building data_files sources
build_src: building npy-pkg config files
running build_py
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
building 'yt.utilities.lib.geometry_utils' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
extra options: '-fopenmp'
gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/geometry_utils.c
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14,
from build/src.linux-x86_64-2.7/yt/utilities/lib/geometry_utils.c:257:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0,
from build/src.linux-x86_64-2.7/yt/utilities/lib/geometry_utils.c:258:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ?_import_umath? defined but not used [-Wunused-function]
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/geometry_utils.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/geometry_utils.so -fopenmp
building 'yt.utilities.lib.Interpolators' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/Interpolators.c
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14,
from build/src.linux-x86_64-2.7/yt/utilities/lib/Interpolators.c:257:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0,
from build/src.linux-x86_64-2.7/yt/utilities/lib/Interpolators.c:258:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ?_import_umath? defined but not used [-Wunused-function]
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/Interpolators.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/Interpolators.so
building 'yt.utilities.lib.marching_cubes' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
gcc: yt/utilities/lib/FixedInterpolator.c
yt/utilities/lib/FixedInterpolator.c: In function ?offset_interpolate?:
yt/utilities/lib/FixedInterpolator.c:54:9: warning: unused variable ?i? [-Wunused-variable]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from yt/utilities/lib/FixedInterpolator.h:34,
from yt/utilities/lib/FixedInterpolator.c:27:
yt/utilities/lib/FixedInterpolator.c: At top level:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c
build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c: In function ?__pyx_pf_2yt_9utilities_3lib_14marching_cubes_march_cubes_grid?:
build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c:9718:11: warning: implicit declaration of function ?offset_fill? [-Wimplicit-function-declaration]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14,
from build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c:257:
build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c: At top level:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0,
from build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c:258:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ?_import_umath? defined but not used [-Wunused-function]
build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c:1345:12: warning: ?__pyx_f_2yt_9utilities_3lib_14marching_cubes_CountTriangles? defined but not used [-Wunused-function]
build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c: In function ?__pyx_pf_2yt_9utilities_3lib_14marching_cubes_march_cubes_grid.isra.12?:
build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.c:10237:56: warning: ?__pyx_v_nskip? may be used uninitialized in this function [-Wmaybe-uninitialized]
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.o build/temp.linux-x86_64-2.7/yt/utilities/lib/FixedInterpolator.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/marching_cubes.so
building 'yt.utilities.lib.misc_utilities' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/misc_utilities.c
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14,
from build/src.linux-x86_64-2.7/yt/utilities/lib/misc_utilities.c:257:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0,
from build/src.linux-x86_64-2.7/yt/utilities/lib/misc_utilities.c:258:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ?_import_umath? defined but not used [-Wunused-function]
build/src.linux-x86_64-2.7/yt/utilities/lib/misc_utilities.c: In function ?__pyx_pf_2yt_9utilities_3lib_14misc_utilities_18kdtree_get_choices.isra.13?:
build/src.linux-x86_64-2.7/yt/utilities/lib/misc_utilities.c:6445:21: warning: ?__pyx_v_my_split? may be used uninitialized in this function [-Wmaybe-uninitialized]
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/misc_utilities.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/misc_utilities.so
building 'yt.utilities.lib.Octree' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/Octree.c
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14,
from build/src.linux-x86_64-2.7/yt/utilities/lib/Octree.c:257:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0,
from build/src.linux-x86_64-2.7/yt/utilities/lib/Octree.c:258:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ?_import_umath? defined but not used [-Wunused-function]
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/Octree.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/Octree.so
building 'yt.utilities.lib.png_writer' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
compile options: '-DPNG_SETJMP_NOT_SUPPORTED=True -I/usr/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/png_writer.c
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14,
from build/src.linux-x86_64-2.7/yt/utilities/lib/png_writer.c:257:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0,
from build/src.linux-x86_64-2.7/yt/utilities/lib/png_writer.c:258:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ?_import_umath? defined but not used [-Wunused-function]
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/png_writer.o -lm -lpng -o build/lib.linux-x86_64-2.7/yt/utilities/lib/png_writer.so
building 'yt.utilities.lib.PointsInVolume' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/PointsInVolume.c
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14,
from build/src.linux-x86_64-2.7/yt/utilities/lib/PointsInVolume.c:257:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0,
from build/src.linux-x86_64-2.7/yt/utilities/lib/PointsInVolume.c:258:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ?_import_umath? defined but not used [-Wunused-function]
build/src.linux-x86_64-2.7/yt/utilities/lib/PointsInVolume.c: In function ?__pyx_pf_2yt_9utilities_3lib_14PointsInVolume_6calculate_fill_grids.isra.14?:
build/src.linux-x86_64-2.7/yt/utilities/lib/PointsInVolume.c:3985:30: warning: ?__pyx_v_total? may be used uninitialized in this function [-Wmaybe-uninitialized]
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/PointsInVolume.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/PointsInVolume.so
building 'yt.utilities.lib.QuadTree' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/QuadTree.c
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14,
from build/src.linux-x86_64-2.7/yt/utilities/lib/QuadTree.c:257:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0,
from build/src.linux-x86_64-2.7/yt/utilities/lib/QuadTree.c:258:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ?_import_umath? defined but not used [-Wunused-function]
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/QuadTree.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/QuadTree.so
building 'yt.utilities.lib.RayIntegrators' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/RayIntegrators.c
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14,
from build/src.linux-x86_64-2.7/yt/utilities/lib/RayIntegrators.c:257:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0,
from build/src.linux-x86_64-2.7/yt/utilities/lib/RayIntegrators.c:258:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ?_import_umath? defined but not used [-Wunused-function]
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/RayIntegrators.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/RayIntegrators.so
building 'yt.utilities.lib.VolumeIntegrator' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
gcc: yt/utilities/lib/kdtree.c
In file included from /usr/include/python2.7/Python.h:8:0,
from yt/utilities/lib/kdtree.h:29,
from yt/utilities/lib/kdtree.c:32:
/usr/include/python2.7/pyconfig.h:1161:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default]
In file included from /usr/include/stdio.h:28:0,
from yt/utilities/lib/kdtree.c:28:
/usr/include/features.h:215:0: note: this is the location of the previous definition
yt/utilities/lib/kdtree.c: In function ?kd_nearest_i?:
yt/utilities/lib/kdtree.c:293:9: warning: variable ?side? set but not used [-Wunused-but-set-variable]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from yt/utilities/lib/kdtree.h:30,
from yt/utilities/lib/kdtree.c:32:
yt/utilities/lib/kdtree.c: At top level:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c
build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c: In function ?__pyx_pf_2yt_9utilities_3lib_16VolumeIntegrator_15PartitionedGrid_8get_isocontour_triangles?:
build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c:11778:9: warning: implicit declaration of function ?offset_fill? [-Wimplicit-function-declaration]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14,
from build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c:257:
build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c: At top level:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0,
from build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c:258:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ?_import_umath? defined but not used [-Wunused-function]
build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c:2415:12: warning: ?__pyx_f_2yt_9utilities_3lib_16VolumeIntegrator_CountTriangles? defined but not used [-Wunused-function]
build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c: In function ?__pyx_f_2yt_9utilities_3lib_16VolumeIntegrator_15PartitionedGrid_integrate_ray?:
build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c:10143:27: warning: ?__pyx_v_exit_t? may be used uninitialized in this function [-Wmaybe-uninitialized]
build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c: In function ?__pyx_pw_2yt_9utilities_3lib_16VolumeIntegrator_17AdaptiveRaySource_7integrate_brick?:
build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c:26259:17: warning: ?__pyx_v_dt? may be used uninitialized in this function [-Wmaybe-uninitialized]
build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.c:26166:28: note: ?__pyx_v_dt? was declared here
gcc: yt/utilities/lib/healpix_mk_pix2xy.c
gcc: yt/utilities/lib/healpix_pix2ang_nest.c
gcc: yt/utilities/lib/FixedInterpolator.c
yt/utilities/lib/FixedInterpolator.c: In function ?offset_interpolate?:
yt/utilities/lib/FixedInterpolator.c:54:9: warning: unused variable ?i? [-Wunused-variable]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from yt/utilities/lib/FixedInterpolator.h:34,
from yt/utilities/lib/FixedInterpolator.c:27:
yt/utilities/lib/FixedInterpolator.c: At top level:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
gcc: yt/utilities/lib/healpix_mk_xy2pix.c
gcc: yt/utilities/lib/healpix_pix2vec_nest.c
gcc: yt/utilities/lib/healpix_vec2pix_nest.c
yt/utilities/lib/healpix_vec2pix_nest.c: In function ?vec2pix_nest?:
yt/utilities/lib/healpix_vec2pix_nest.c:56:30: warning: unused variable ?pi? [-Wunused-variable]
gcc: yt/utilities/lib/healpix_ang2pix_nest.c
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.o build/temp.linux-x86_64-2.7/yt/utilities/lib/FixedInterpolator.o build/temp.linux-x86_64-2.7/yt/utilities/lib/kdtree.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_xy2pix.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_vec2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_ang2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2ang_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_pix2xy.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2vec_nest.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/VolumeIntegrator.so
building 'yt.utilities.lib.grid_traversal' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
compile options: '-Iyt/utilities/lib/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
extra options: '-fopenmp'
gcc: yt/utilities/lib/kdtree.c
In file included from /usr/include/python2.7/Python.h:8:0,
from yt/utilities/lib/kdtree.h:29,
from yt/utilities/lib/kdtree.c:32:
/usr/include/python2.7/pyconfig.h:1161:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default]
In file included from /usr/include/stdio.h:28:0,
from yt/utilities/lib/kdtree.c:28:
/usr/include/features.h:215:0: note: this is the location of the previous definition
yt/utilities/lib/kdtree.c: In function ?kd_nearest_i?:
yt/utilities/lib/kdtree.c:293:9: warning: variable ?side? set but not used [-Wunused-but-set-variable]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from yt/utilities/lib/kdtree.h:30,
from yt/utilities/lib/kdtree.c:32:
yt/utilities/lib/kdtree.c: At top level:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
gcc: yt/utilities/lib/healpix_mk_pix2xy.c
gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.c
build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.c: In function ?__pyx_f_2yt_9utilities_3lib_14grid_traversal_volume_render_stars_sampler?:
build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.c:7893:28: warning: variable ?__pyx_v_ds? set but not used [-Wunused-but-set-variable]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14,
from build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.c:257:
build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.c: At top level:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0,
from build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.c:258:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ?_import_umath? defined but not used [-Wunused-function]
gcc: yt/utilities/lib/FixedInterpolator.c
yt/utilities/lib/FixedInterpolator.c: In function ?offset_interpolate?:
yt/utilities/lib/FixedInterpolator.c:54:9: warning: unused variable ?i? [-Wunused-variable]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from yt/utilities/lib/FixedInterpolator.h:34,
from yt/utilities/lib/FixedInterpolator.c:27:
yt/utilities/lib/FixedInterpolator.c: At top level:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
gcc: yt/utilities/lib/healpix_mk_xy2pix.c
gcc: yt/utilities/lib/healpix_pix2vec_nest.c
gcc: yt/utilities/lib/healpix_vec2pix_nest.c
yt/utilities/lib/healpix_vec2pix_nest.c: In function ?vec2pix_nest?:
yt/utilities/lib/healpix_vec2pix_nest.c:56:30: warning: unused variable ?pi? [-Wunused-variable]
gcc: yt/utilities/lib/healpix_ang2pix_nest.c
gcc: yt/utilities/lib/healpix_pix2ang_nest.c
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.o build/temp.linux-x86_64-2.7/yt/utilities/lib/FixedInterpolator.o build/temp.linux-x86_64-2.7/yt/utilities/lib/kdtree.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_xy2pix.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_vec2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_ang2pix_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2ang_nest.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_mk_pix2xy.o build/temp.linux-x86_64-2.7/yt/utilities/lib/healpix_pix2vec_nest.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/grid_traversal.so -fopenmp
building 'yt.utilities.lib.GridTree' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
gcc: build/src.linux-x86_64-2.7/yt/utilities/lib/GridTree.c
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:26:0,
from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:14,
from build/src.linux-x86_64-2.7/yt/utilities/lib/GridTree.c:257:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1532:1: warning: ?_import_array? defined but not used [-Wunused-function]
In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ufuncobject.h:152:0,
from build/src.linux-x86_64-2.7/yt/utilities/lib/GridTree.c:258:
/usr/lib/python2.7/dist-packages/numpy/core/include/numpy/__ufunc_api.h:226:1: warning: ?_import_umath? defined but not used [-Wunused-function]
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/lib/GridTree.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/lib/GridTree.so
building 'yt.utilities.data_point_utilities' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
gcc: yt/utilities/data_point_utilities.c
yt/utilities/data_point_utilities.c: In function ?DataCubeGeneric?:
yt/utilities/data_point_utilities.c:471:17: warning: variable ?ag_re? set but not used [-Wunused-but-set-variable]
yt/utilities/data_point_utilities.c:309:14: warning: variable ?ag_cm? set but not used [-Wunused-but-set-variable]
yt/utilities/data_point_utilities.c: In function ?Py_FillRegion?:
yt/utilities/data_point_utilities.c:648:35: warning: unused variable ?rk? [-Wunused-variable]
yt/utilities/data_point_utilities.c:648:31: warning: unused variable ?rj? [-Wunused-variable]
yt/utilities/data_point_utilities.c:648:27: warning: unused variable ?ri? [-Wunused-variable]
yt/utilities/data_point_utilities.c:643:40: warning: unused variable ?ize? [-Wunused-variable]
yt/utilities/data_point_utilities.c:643:35: warning: unused variable ?iye? [-Wunused-variable]
yt/utilities/data_point_utilities.c:643:30: warning: unused variable ?ixe? [-Wunused-variable]
yt/utilities/data_point_utilities.c:643:25: warning: unused variable ?izs? [-Wunused-variable]
yt/utilities/data_point_utilities.c:643:20: warning: unused variable ?iys? [-Wunused-variable]
yt/utilities/data_point_utilities.c:643:15: warning: unused variable ?ixs? [-Wunused-variable]
yt/utilities/data_point_utilities.c: In function ?Py_FillBuffer?:
yt/utilities/data_point_utilities.c:852:29: warning: unused variable ?rk? [-Wunused-variable]
yt/utilities/data_point_utilities.c:852:25: warning: unused variable ?rj? [-Wunused-variable]
yt/utilities/data_point_utilities.c:852:21: warning: unused variable ?ri? [-Wunused-variable]
yt/utilities/data_point_utilities.c:847:40: warning: unused variable ?ize? [-Wunused-variable]
yt/utilities/data_point_utilities.c:847:35: warning: unused variable ?iye? [-Wunused-variable]
yt/utilities/data_point_utilities.c:847:30: warning: unused variable ?ixe? [-Wunused-variable]
yt/utilities/data_point_utilities.c:847:25: warning: unused variable ?izs? [-Wunused-variable]
yt/utilities/data_point_utilities.c:847:20: warning: unused variable ?iys? [-Wunused-variable]
yt/utilities/data_point_utilities.c:847:15: warning: unused variable ?ixs? [-Wunused-variable]
yt/utilities/data_point_utilities.c:844:23: warning: unused variable ?direction? [-Wunused-variable]
yt/utilities/data_point_utilities.c:844:19: warning: unused variable ?ll? [-Wunused-variable]
yt/utilities/data_point_utilities.c: At top level:
yt/utilities/data_point_utilities.c:587:13: warning: ?dcNothing? defined but not used [-Wunused-function]
yt/utilities/data_point_utilities.c: In function ?Py_FillBuffer?:
yt/utilities/data_point_utilities.c:1043:25: warning: ?c_data? may be used uninitialized in this function [-Wmaybe-uninitialized]
yt/utilities/data_point_utilities.c:1038:5: warning: ?n_fields? may be used uninitialized in this function [-Wmaybe-uninitialized]
yt/utilities/data_point_utilities.c:1042:25: warning: ?g_data? may be used uninitialized in this function [-Wmaybe-uninitialized]
yt/utilities/data_point_utilities.c:982:16: warning: ?y_loc? may be used uninitialized in this function [-Wmaybe-uninitialized]
yt/utilities/data_point_utilities.c:982:9: warning: ?x_loc? may be used uninitialized in this function [-Wmaybe-uninitialized]
yt/utilities/data_point_utilities.c: In function ?Py_FillRegion?:
yt/utilities/data_point_utilities.c:826:7: warning: ?n_fields? may be used uninitialized in this function [-Wmaybe-uninitialized]
yt/utilities/data_point_utilities.c:793:30: warning: ?to_call? may be used uninitialized in this function [-Wmaybe-uninitialized]
yt/utilities/data_point_utilities.c: In function ?Py_CombineGrids?:
yt/utilities/data_point_utilities.c:268:9: warning: ?grid_src_vals? may be used uninitialized in this function [-Wuninitialized]
yt/utilities/data_point_utilities.c:269:9: warning: ?grid_dst_vals? may be used uninitialized in this function [-Wuninitialized]
yt/utilities/data_point_utilities.c: In function ?Py_FindContours?:
yt/utilities/data_point_utilities.c:1115:38: warning: ?status? may be used uninitialized in this function [-Wmaybe-uninitialized]
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/yt/utilities/data_point_utilities.o -lm -o build/lib.linux-x86_64-2.7/yt/utilities/data_point_utilities.so
building 'yt.utilities.hdf5_light_reader' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
compile options: '-DH5_USE_16_API=True -I/usr/lib/include -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
gcc: yt/utilities/hdf5_light_reader.c
yt/utilities/hdf5_light_reader.c: In function ?Py_ReadHDF5DataSet?:
yt/utilities/hdf5_light_reader.c:168:12: warning: variable ?type_size? set but not used [-Wunused-but-set-variable]
yt/utilities/hdf5_light_reader.c: In function ?get_array_from_nodename?:
yt/utilities/hdf5_light_reader.c:672:12: warning: variable ?type_size? set but not used [-Wunused-but-set-variable]
yt/utilities/hdf5_light_reader.c: In function ?Py_ReadListOfDatasets?:
yt/utilities/hdf5_light_reader.c:550:7: warning: ?nodelist? may be used uninitialized in this function [-Wuninitialized]
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/yt/utilities/hdf5_light_reader.o -L/usr/lib/lib -lm -lhdf5 -o build/lib.linux-x86_64-2.7/yt/utilities/hdf5_light_reader.so
building 'yt.utilities.libconfig_wrapper' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/utilities/_libconfig
compile options: '-DHAVE_XLOCALE_H=True -Iyt/utilities/_libconfig/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
gcc: yt/utilities/_libconfig/grammar.c
grammar.y:50:1: warning: function declaration isn?t a prototype [-Wstrict-prototypes]
grammar.y:51:1: warning: function declaration isn?t a prototype [-Wstrict-prototypes]
gcc: yt/utilities/_libconfig/libconfig.c
yt/utilities/_libconfig/libconfig.c: In function ?__config_locale_override?:
yt/utilities/_libconfig/libconfig.c:100:2: warning: #warning "No way to modify calling thread's locale!" [-Wcpp]
yt/utilities/_libconfig/libconfig.c: In function ?__config_locale_restore?:
yt/utilities/_libconfig/libconfig.c:121:2: warning: #warning "No way to modify calling thread's locale!" [-Wcpp]
yt/utilities/_libconfig/libconfig.c: In function ?__config_read?:
yt/utilities/_libconfig/libconfig.c:555:19: warning: variable ?buffer? set but not used [-Wunused-but-set-variable]
gcc: yt/utilities/_libconfig/strbuf.c
gcc: yt/utilities/_libconfig/scanner.c
gcc: build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c
build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c: In function ?__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_4read_file?:
build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c:831:24: warning: assignment discards ?const? qualifier from pointer target type [enabled by default]
build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c:840:24: warning: assignment discards ?const? qualifier from pointer target type [enabled by default]
build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c: In function ?__pyx_pf_2yt_9utilities_17libconfig_wrapper_22libconfigConfiguration_10get_setting?:
build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.c:1362:23: warning: assignment discards ?const? qualifier from pointer target type [enabled by default]
gcc: yt/utilities/_libconfig/scanctx.c
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/libconfig.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/grammar.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanctx.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/scanner.o build/temp.linux-x86_64-2.7/yt/utilities/_libconfig/strbuf.o -o build/lib.linux-x86_64-2.7/yt/utilities/libconfig_wrapper.so
building 'yt.visualization._MPL' extension
compiling C sources
C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fPIC
creating build/temp.linux-x86_64-2.7/yt/visualization
compile options: '-I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c'
gcc: yt/visualization/_MPL.c
yt/visualization/_MPL.c: In function ?Py_Pixelize?:
yt/visualization/_MPL.c:121:7: warning: unused variable ?ndy? [-Wunused-variable]
yt/visualization/_MPL.c:120:7: warning: unused variable ?ndx? [-Wunused-variable]
yt/visualization/_MPL.c:119:7: warning: unused variable ?ny? [-Wunused-variable]
yt/visualization/_MPL.c: In function ?Py_CPixelize?:
yt/visualization/_MPL.c:352:15: warning: unused variable ?radius? [-Wunused-variable]
yt/visualization/_MPL.c:337:60: warning: unused variable ?dsp? [-Wunused-variable]
yt/visualization/_MPL.c:337:54: warning: unused variable ?dzsp? [-Wunused-variable]
yt/visualization/_MPL.c:337:48: warning: unused variable ?dysp? [-Wunused-variable]
yt/visualization/_MPL.c:337:42: warning: unused variable ?dxsp? [-Wunused-variable]
yt/visualization/_MPL.c:337:36: warning: unused variable ?pysp? [-Wunused-variable]
yt/visualization/_MPL.c:337:30: warning: unused variable ?pxsp? [-Wunused-variable]
yt/visualization/_MPL.c:337:25: warning: unused variable ?zsp? [-Wunused-variable]
yt/visualization/_MPL.c:337:20: warning: unused variable ?ysp? [-Wunused-variable]
yt/visualization/_MPL.c:337:15: warning: unused variable ?xsp? [-Wunused-variable]
gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro build/temp.linux-x86_64-2.7/yt/visualization/_MPL.o -lm -o build/lib.linux-x86_64-2.7/yt/visualization/_MPL.so
running scons
running build_scripts
creating build/scripts.linux-x86_64-2.7
copying and adjusting scripts/iyt -> build/scripts.linux-x86_64-2.7
copying and adjusting scripts/yt_lodgeit.py -> build/scripts.linux-x86_64-2.7
copying scripts/pyro_queue.py -> build/scripts.linux-x86_64-2.7
changing mode of build/scripts.linux-x86_64-2.7/iyt from 644 to 755
changing mode of build/scripts.linux-x86_64-2.7/yt_lodgeit.py from 644 to 755
changing mode of build/scripts.linux-x86_64-2.7/pyro_queue.py from 644 to 755
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