[yt-users] Error on installation of yt on system python
trobolo dinni
trobolo.trobolo.dinni5 at gmail.com
Mon Feb 18 14:27:34 PST 2013
Hi Nathan,
thanks for the help, I'll try these options you suggested me.
Cheers,
Roberto
On 19 February 2013 07:53, Nathan Goldbaum <nathan12343 at gmail.com> wrote:
> You might also check out the Ubuntu PPAs that Mike Kuhlen set up. The PPA
> method is described at the bottom of the 'Get yt' section of the yt
> website: http://yt-project.org/#getyt
>
> I've never used Mike's PPA myself, though, so I can't speak to the state
> of it at the moment.
>
>
> On Mon, Feb 18, 2013 at 12:49 PM, Nathan Goldbaum <nathan12343 at gmail.com>wrote:
>
>> Hi Roberto,
>>
>> Sorry my advice didn't help. It's possible that reinstalling Cython will
>> fix the issue, although if you already have Cython 0.17.1 installed it's
>> probably fine as is.
>>
>> One possible way around this would be to install yt using the install
>> script. We've recently added the option to have the install script build
>> isolated LAPACK and BLAS installations which scipy can link against. The
>> option is turned on by setting INST_SCIPY=1 in the install script.
>>
>> Again, sorry I can't be of more assistance, I'm not sure what's going
>> wrong in your case.
>>
>> -Nathan
>>
>>
>> On Sun, Feb 17, 2013 at 3:58 PM, trobolo dinni <
>> trobolo.trobolo.dinni5 at gmail.com> wrote:
>>
>>> Hi Nathan,
>>>
>>> sorry for the delay in replying.
>>>
>>> To install yt on the system python I followed the procedure you
>>> mentioned: entered the yt directory cloned from bitbucket, run "python
>>> setup.py install".
>>> I did that again to check another time but the error persists.
>>>
>>> As I said I just reinstalled the same Ubuntu version on the same
>>> computer where before yt was usually installed by following the procedure
>>> above and it was normally running.
>>>
>>> Could reinstall cython help to solve the problem?
>>>
>>> Thanks,
>>> Roberto
>>>
>>>
>>>
>>>
>>> On 14 February 2013 17:57, Nathan Goldbaum <nathan12343 at gmail.com>wrote:
>>>
>>>> Hi Trobolo,
>>>>
>>>> data_point_utilities is a c extension that gets auto generated from a
>>>> cython file and then compiled into a shared library when you run the yt
>>>> setup script:
>>>>
>>>> $ cd $YT_HG
>>>> $ python setup.py install
>>>>
>>>> Here $YT_HG is the directory containing the yt source code repository
>>>> you cloned from bitbucket.
>>>>
>>>> Please let us know if you continue to have difficulties installing yt
>>>> after running the setup script.
>>>>
>>>> Cheers,
>>>>
>>>> Nathan
>>>>
>>>> On Feb 13, 2013, at 10:49 PM, trobolo dinni <
>>>> trobolo.trobolo.dinni5 at gmail.com> wrote:
>>>>
>>>> > Dear yt users,
>>>> >
>>>> > I usually install yt on system python, following the procedure
>>>> suggested me in this mailing list some months ago. In general everything
>>>> goes fine with the installation and I can normally use yt.
>>>> >
>>>> > Now I installed Ubuntu from scratch in my computer (where previously
>>>> yt was installed and running!) and the installation seems to fine, but when
>>>> I insert the command "from yt.mods import * ", I get the following error:
>>>> >
>>>> >
>>>> >
>>>> ---------------------------------------------------------------------------
>>>> > ImportError Traceback (most recent call
>>>> last)
>>>> >
>>>> > /usr/local/lib/python2.7/dist-packages/yt/<ipython console> in
>>>> <module>()
>>>> >
>>>> > /usr/local/lib/python2.7/dist-packages/yt/yt/mods.py in <module>()
>>>> > 56 np.seterr(all = 'ignore')
>>>> > 57
>>>> > ---> 58 from yt.data_objects.api import \
>>>> > 59 BinnedProfile1D, BinnedProfile2D, BinnedProfile3D, \
>>>> > 60 data_object_registry, \
>>>> >
>>>> > /usr/local/lib/python2.7/dist-packages/yt/yt/data_objects/api.py in
>>>> <module>()
>>>> > 29 """
>>>> > 30
>>>> > ---> 31 from grid_patch import \
>>>> > 32 AMRGridPatch
>>>> > 33
>>>> >
>>>> >
>>>> /usr/local/lib/python2.7/dist-packages/yt/yt/data_objects/grid_patch.py in
>>>> <module>()
>>>> > 33 from yt.utilities.definitions import x_dict, y_dict
>>>> > 34
>>>> > ---> 35 from yt.data_objects.data_containers import YTFieldData
>>>> > 36 from yt.utilities.definitions import x_dict, y_dict
>>>> > 37 from .field_info_container import \
>>>> >
>>>> >
>>>> /usr/local/lib/python2.7/dist-packages/yt/yt/data_objects/data_containers.py
>>>> in <module>()
>>>> > 41 from yt.config import ytcfg
>>>> > 42
>>>> > ---> 43 from yt.data_objects.derived_quantities import
>>>> GridChildMaskWrapper
>>>> > 44 from yt.data_objects.particle_io import
>>>> particle_handler_registry
>>>> > 45 from yt.utilities.lib import find_grids_in_inclined_box, \
>>>> >
>>>> >
>>>> /usr/local/lib/python2.7/dist-packages/yt/yt/data_objects/derived_quantities.py
>>>> in <module>()
>>>> > 33 from yt.data_objects.field_info_container import \
>>>> > 34 FieldDetector
>>>> > ---> 35 from yt.utilities.data_point_utilities import
>>>> FindBindingEnergy
>>>> > 36 from yt.utilities.parallel_tools.parallel_analysis_interface
>>>> import \
>>>> > 37 ParallelAnalysisInterface
>>>> >
>>>> > ImportError: No module named data_point_utilities
>>>> >
>>>> > I would like to ask if someone has an idea of how can I solve this
>>>> problem.
>>>> >
>>>> > Thanks,
>>>> > Roberto
>>>> >
>>>> >
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