[yt-users] EPS Multiplot
John Regan
johnanthonyregan at gmail.com
Tue Dec 3 08:23:11 PST 2013
Hi John,
OK I think I have it running now. I rebuilt YT and re pulled your PR and it
looks like everything is good now.
Unfortunately the code fails in the same way as before
Traceback (most recent call last):
File "OffAxisProjection_MultiPlot.py", line 63, in <module>
mp = eps.multiplot_yt(1, 2, proj, bare_axes=False, margins=(0.75,0.75))
File
"/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/src/yt-hg/yt/visualization/eps_writer.py",
line 1132, in multiplot_yt
figure = multiplot(ncol, nrow, yt_plots=plots, fields=fields, **kwargs)
File
"/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/src/yt-hg/yt/visualization/eps_writer.py",
line 980, in multiplot
field=fields[index])
File
"/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/src/yt-hg/yt/visualization/eps_writer.py",
line 453, in insert_image_yt
plot.refresh()
File
"/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/src/yt-hg/yt/visualization/plot_container.py",
line 32, in newfunc
args[0]._recreate_frb()
File
"/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/src/yt-hg/yt/visualization/plot_window.py",
line 266, in _recreate_frb
periodic=self._periodic)
File
"/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/src/yt-hg/yt/visualization/fixed_resolution.py",
line 96, in __init__
h.plots.append(weakref.proxy(self))
ReferenceError: weakly-referenced object no longer exists
The guts of my script is fairly simple:
GetFileNames(FileNames)
proj = []
for i, fn in enumerate(FileNames):
fn = Path + fn
pf = load(fn) # load data
sp = pf.h.sphere('max', (0.5,'pc'))
L = sp.quantities["AngularMomentumVector"]()
proj.append(OffAxisSlicePlot(pf, L, "Density", center="max",
axes_unit='unitary', width=width,
fontsize=12))
proj[i].set_zlim('all', 1e-13, 1e-8)
mp = eps.multiplot_yt(1, 2, proj, bare_axes=False, margins=(0.75,0.75))
mp.save_fig('multi', format='eps')
Rolling back the pull gets me back to the original error with multiplot_yt
(so the changes are being brought in it seems):
Traceback (most recent call last):
File "OffAxisProjection_MultiPlot.py", line 63, in <module>
mp = eps.multiplot_yt(1, 2, proj, bare_axes=False, margins=(0.75,0.75))
File
"/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/src/yt-hg/yt/visualization/eps_writer.py",
line 1043, in multiplot_yt
if len(plot_col.plots) < nrow*ncol:
AttributeError: 'list' object has no attribute 'plots'
John
On Tue, Dec 3, 2013 at 5:05 PM, John Regan <johnanthonyregan at gmail.com>wrote:
> No worries. I'll let you know if I figure it out. For some reason that
> module is missing from my version after the pull. I'm trying to figure out
> why now....
>
>
> On Tue, Dec 3, 2013 at 5:02 PM, John Wise <jwise at physics.gatech.edu>wrote:
>
>> Hi John,
>>
>> Hmmm, that's odd. I'm currently in meetings until mid-afternoon, so
>> I'll look at this problem then.
>>
>> Cheers,
>> John
>>
>> On Tue, 03 Dec 2013 at 16:26 +0200, John Regan wrote:
>> > Hi John,
>> >
>> > I'm getting a problem with the profile_plotter.py file.
>> >
>> > Traceback (most recent call last):
>> > � File "OffAxisProjection_MultiPlot.py", line 12, in <module>
>> > ��� import yt.visualization.eps_writer as eps
>> > � File
>> >
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/src/yt-hg/yt/visualization/eps_writer.py",
>> > line 31, in <module>
>> > ��� from .profile_plotter import PhasePlot
>> > � File
>> >
>> "/homeappl/home/regan/appl_taito/YT/Dev/yt-x86_64/src/yt-hg/yt/visualization/profile_plotter.py",
>> > line 31, in <module>
>> > ��� from .plot_container import \
>> > ImportError: No module named plot_container
>> >
>> > John
>> >
>> > On Tue, Dec 3, 2013 at 4:09 PM, John Wise <[1]
>> jwise at physics.gatech.edu>
>> > wrote:
>> >
>> > Hi John,
>> >
>> > Not a stupid question at all.
>> >
>> > You can get my changes by doing
>> >
>> > hg pull -r e7aebae [2]https://bitbucket.org/jwise77/yt
>> >
>> > Cheers,
>> > John
>> >
>> > On 12/03/2013 08:28 AM, John Regan wrote:
>> >
>> > Hi John,
>> >
>> > Stupid question now - but how do I get my hands on that PR?
>> > Is there a link somewhere where I can pull from?
>> >
>> > John
>> >
>> > On Tue, Dec 3, 2013 at 3:10 PM, John Regan
>> > <[3]johnanthonyregan at gmail.com
>> > <mailto:[4]johnanthonyregan at gmail.com>> wrote:
>> >
>> > � � Excellent - I'll pull the changeset and let you know!
>> >
>> > � � On Tue, Dec 3, 2013 at 3:06 PM, John Wise
>> > <[5]jwise at physics.gatech.edu
>> > � � <mailto:[6]jwise at physics.gatech.edu>> wrote:
>> >
>> > � � � � Hi,
>> >
>> > � � � � It's funny that you emailed right now because I was just
>> > putting
>> > � � � � the final touches on my changes this morning! �I've just
>> > � � � � submitted a pull request
>> >
>> > � � � � [7]
>> https://bitbucket.org/yt___analysis/yt/pull-request/661/
>> > � � � � <[8]
>> https://bitbucket.org/yt_analysis/yt/pull-request/661/>
>> >
>> > � � � � which has an example in the description. �If you could
>> test it
>> > � � � � out, that would be great!
>> >
>> > � � � � Cheers,
>> > � � � � John
>> >
>> > � � � � On 12/03/2013 07:48 AM, John Regan wrote:
>> >
>> > � � � � � � Hi John,
>> >
>> > � � � � � � Cool. Sounds good.
>> >
>> > � � � � � � Let me know if there is anything I can help with.
>> >
>> > � � � � � � Cheers,
>> > � � � � � � John
>> >
>> > � � � � � � On Tue, Dec 3, 2013 at 2:44 PM, John Wise
>> > � � � � � � <[9]jwise at physics.gatech.edu
>> > <mailto:[10]jwise at physics.gatech.edu>
>> > � � � � � � <mailto:[11]jwise at physics.gatech.__edu
>> > � � � � � � <mailto:[12]jwise at physics.gatech.edu>>> wrote:
>> >
>> > � � � � � � � � �Hi John,
>> >
>> > � � � � � � � � �Last week, I discovered that I didn't extend the
>> > � � � � � � capabilities of
>> > � � � � � � � � �eps_writer's multiplot to handle PlotWindows.
>> �I'm
>> > � � � � � � working on this
>> > � � � � � � � � �right now, and hopefully I'll have something
>> soon.
>> >
>> > � � � � � � � � �Cheers,
>> > � � � � � � � � �JOhn
>> >
>> > � � � � � � � � �On 12/03/2013 07:43 AM, John Regan wrote:
>> >
>> > � � � � � � � � � � �Hi All,
>> >
>> > � � � � � � � � � � �Not sure whether this is currently possible
>> but
>> > I'd
>> > � � � � � � like to create a
>> > � � � � � � � � � � �multiplot eps figure containing a selection
>> of
>> > � � � � � � projections.
>> >
>> > � � � � � � � � � � �I first of all create my list of
>> > � � � � � � OffAxisProjectionPlots (proj)
>> > � � � � � � � � � � �and then
>> > � � � � � � � � � � �call
>> >
>> > � � � � � � � � � � �ep = eps.multiplot(1, 2, proj,
>> bare_axes=True).
>> >
>> > � � � � � � � � � � �where proj is a list of plot_window objects.
>> >
>> > � � � � � � � � � � �I'm using the YT dev branch and it's
>> falling over
>> > � � � � � � with the error:
>> >
>> > � � � � � � � � � � �Traceback (most recent call last):
>> > � � � � � � � � � � � � �File
>> "OffAxisProjection_MultiPlot.____py",
>> > line
>> > � � � � � � 64, in <module>
>> >
>> > � � � � � � � � � � � � � �ep = eps.multiplot(1, 2, proj,
>> > bare_axes=True)
>> > � � � � � � � � � � � � �File
>> >
>> > � � � � � �
>> >
>> "/homeappl/home/regan/appl_____taito/YT/Dev/yt-x86_64/src/yt-____hg/yt/visualization/eps_____writer.py",
>> > � � � � � � � � � � �line 934, in multiplot
>> > � � � � � � � � � � � � � �d.insert_image_yt(yt_plots[____index],
>> > � � � � � � pos=(xpos, ypos))
>> > � � � � � � � � � � � � �File
>> >
>> > � � � � � �
>> >
>> "/homeappl/home/regan/appl_____taito/YT/Dev/yt-x86_64/src/yt-____hg/yt/visualization/eps_____writer.py",
>> >
>> > � � � � � � � � � � �line 424, in insert_image_yt
>> > � � � � � � � � � � � � � �plot.refresh()
>> > � � � � � � � � � � � � �File
>> >
>> > � � � � � �
>> >
>> "/homeappl/home/regan/appl_____taito/YT/Dev/yt-x86_64/src/yt-____hg/yt/visualization/plot_____container.py",
>> >
>> > � � � � � � � � � � �line 32, in newfunc
>> > � � � � � � � � � � � � � �args[0]._recreate_frb()
>> > � � � � � � � � � � � � �File
>> >
>> > � � � � � �
>> >
>> "/homeappl/home/regan/appl_____taito/YT/Dev/yt-x86_64/src/yt-____hg/yt/visualization/plot_____window.py",
>> >
>> > � � � � � � � � � � �line 266, in _recreate_frb
>> > � � � � � � � � � � � � � �periodic=self._periodic)
>> > � � � � � � � � � � � � �File
>> >
>> > � � � � � �
>> >
>> "/homeappl/home/regan/appl_____taito/YT/Dev/yt-x86_64/src/yt-____hg/yt/visualization/fixed_____resolution.py",
>> > � � � � � � � � � � �line 96, in __init__
>> > � � � � � � � � � � � � �
>> �h.plots.append(weakref.proxy(____self))
>> >
>> > � � � � � � � � � � �ReferenceError: weakly-referenced object no
>> > longer
>> > � � � � � � exists
>> >
>> > � � � � � � � � � � �If anyone knows what's happening let me
>> know.
>> >
>> > � � � � � � � � � � �Thanks in advance!
>> >
>> > � � � � � � � � � � �John
>> >
>> > � � � � � � � � � �
>> > �___________________________________________________
>> > � � � � � � � � � � �yt-users mailing list
>> > � � � � � � [13]yt-users at lists.spacepope.org
>> > � � � � � � <mailto:[14]yt-users at lists.spacepope.org>
>> > � � � � � � <mailto:[15]yt-users at lists.__[16]spacepope.org
>> > � � � � � � <mailto:[17]yt-users at lists.spacepope.org>>
>> > � � � � � �
>> > [18]
>> http://lists.spacepope.org/____listinfo.cgi/yt-users-____spacepope.org
>> > � � � � � �
>> > <[19]
>> http://lists.spacepope.org/__listinfo.cgi/yt-users-__spacepope.org>
>> >
>> > � � � � � �
>> > <[20]
>> http://lists.spacepope.org/__listinfo.cgi/yt-users-__spacepope.org
>> > � � � � � �
>> > <[21]
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>
>> >
>> > � � � � � � � � �--
>> > � � � � � � � � �John Wise
>> > � � � � � � � � �Assistant Professor of Physics
>> > � � � � � � � � �Center for Relativistic Astrophysics, Georgia
>> Tech
>> > � � � � � � [22]http://cosmo.gatech.edu
>> > � � � � � � � �
>> �___________________________________________________
>> > � � � � � � � � �yt-users mailing list
>> > � � � � � � [23]yt-users at lists.spacepope.org
>> > � � � � � � <mailto:[24]yt-users at lists.spacepope.org>
>> > � � � � � � <mailto:[25]yt-users at lists.__[26]spacepope.org
>> > � � � � � � <mailto:[27]yt-users at lists.spacepope.org>>
>> > � � � � � �
>> > [28]
>> http://lists.spacepope.org/____listinfo.cgi/yt-users-____spacepope.org
>> > � � � � � �
>> > <[29]
>> http://lists.spacepope.org/__listinfo.cgi/yt-users-__spacepope.org>
>> >
>> > � � � � � �
>> > <[30]
>> http://lists.spacepope.org/__listinfo.cgi/yt-users-__spacepope.org
>> > � � � � � �
>> > <[31]
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>
>> >
>> > � � � � � � _________________________________________________
>> > � � � � � � yt-users mailing list
>> > � � � � � � [32]yt-users at lists.spacepope.org
>> > � � � � � � <mailto:[33]yt-users at lists.spacepope.org>
>> > � � � � � �
>> > [34]
>> http://lists.spacepope.org/__listinfo.cgi/yt-users-__spacepope.org
>> > � � � � � �
>> > <[35]
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>
>> >
>> > � � � � --
>> > � � � � John Wise
>> > � � � � Assistant Professor of Physics
>> > � � � � Center for Relativistic Astrophysics, Georgia Tech
>> > � � � � [36]http://cosmo.gatech.edu
>> > � � � � _________________________________________________
>> > � � � � yt-users mailing list
>> > � � � � [37]yt-users at lists.spacepope.org
>> > <mailto:[38]yt-users at lists.spacepope.org>
>> > � � � �
>> > [39]
>> http://lists.spacepope.org/__listinfo.cgi/yt-users-__spacepope.org
>> > � � � �
>> > <[40]
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>
>> >
>> > _______________________________________________
>> > yt-users mailing list
>> > [41]yt-users at lists.spacepope.org
>> > [42]
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> >
>> > --
>> > John Wise
>> > Assistant Professor of Physics
>> > Center for Relativistic Astrophysics, Georgia Tech
>> > [43]http://cosmo.gatech.edu
>> > _______________________________________________
>> > yt-users mailing list
>> > [44]yt-users at lists.spacepope.org
>> > [45]http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> >
>> > References
>> >
>> > Visible links
>> > 1. mailto:jwise at physics.gatech.edu
>> > 2. https://bitbucket.org/jwise77/yt
>> > 3. mailto:johnanthonyregan at gmail.com
>> > 4. mailto:johnanthonyregan at gmail.com
>> > 5. mailto:jwise at physics.gatech.edu
>> > 6. mailto:jwise at physics.gatech.edu
>> > 7. https://bitbucket.org/yt___analysis/yt/pull-request/661/
>> > 8. https://bitbucket.org/yt_analysis/yt/pull-request/661/
>> > 9. mailto:jwise at physics.gatech.edu
>> > 10. mailto:jwise at physics.gatech.edu
>> > 11. mailto:jwise at physics.gatech
>> > 12. mailto:jwise at physics.gatech.edu
>> > 13. mailto:yt-users at lists.spacepope.org
>> > 14. mailto:yt-users at lists.spacepope.org
>> > 15. mailto:yt-users at lists
>> > 16. http://spacepope.org/
>> > 17. mailto:yt-users at lists.spacepope.org
>> > 18.
>> http://lists.spacepope.org/____listinfo.cgi/yt-users-____spacepope.org
>> > 19.
>> http://lists.spacepope.org/__listinfo.cgi/yt-users-__spacepope.org
>> > 20.
>> http://lists.spacepope.org/__listinfo.cgi/yt-users-__spacepope.org
>> > 21. http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> > 22. http://cosmo.gatech.edu/
>> > 23. mailto:yt-users at lists.spacepope.org
>> > 24. mailto:yt-users at lists.spacepope.org
>> > 25. mailto:yt-users at lists
>> > 26. http://spacepope.org/
>> > 27. mailto:yt-users at lists.spacepope.org
>> > 28.
>> http://lists.spacepope.org/____listinfo.cgi/yt-users-____spacepope.org
>> > 29.
>> http://lists.spacepope.org/__listinfo.cgi/yt-users-__spacepope.org
>> > 30.
>> http://lists.spacepope.org/__listinfo.cgi/yt-users-__spacepope.org
>> > 31. http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> > 32. mailto:yt-users at lists.spacepope.org
>> > 33. mailto:yt-users at lists.spacepope.org
>> > 34.
>> http://lists.spacepope.org/__listinfo.cgi/yt-users-__spacepope.org
>> > 35. http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> > 36. http://cosmo.gatech.edu/
>> > 37. mailto:yt-users at lists.spacepope.org
>> > 38. mailto:yt-users at lists.spacepope.org
>> > 39.
>> http://lists.spacepope.org/__listinfo.cgi/yt-users-__spacepope.org
>> > 40. http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> > 41. mailto:yt-users at lists.spacepope.org
>> > 42. http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>> > 43. http://cosmo.gatech.edu/
>> > 44. mailto:yt-users at lists.spacepope.org
>> > 45. http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>
>> > _______________________________________________
>> > yt-users mailing list
>> > yt-users at lists.spacepope.org
>> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>
>>
>> --
>> John Wise
>> Assistant Professor of Physics
>> Center for Relativistic Astrophysics, Georgia Tech
>> _______________________________________________
>> yt-users mailing list
>> yt-users at lists.spacepope.org
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>
>
>
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