[yt-users] How to fix this problem
Samuel Dupree
sdupree at speakeasy.net
Sun Dec 1 17:26:44 PST 2013
I'm attempting to install yt version 2.6 on a MacBook Pro running Mac OS
X 10.9. In executing the install script, install_script.sh, I get the
following output:
users-MacBook-Pro:yt_2.6 user$ bash install_script.sh
========================================================================
Hi there! This is the yt installation script. We're going to download
some stuff and install it to create a self-contained, isolated
environment for yt to run within.
Inside the installation script you can set a few variables. Here's what
they're currently set to -- you can hit Ctrl-C and edit the values in
the script if you aren't such a fan.
INST_ZLIB = 1 so I will be installing zlib
INST_BZLIB = 1 so I will be installing bzlib
INST_PNG = 1 so I will be installing libpng
INST_FTYPE = 1 so I will be installing freetype2
INST_SQLITE3 = 1 so I will be installing SQLite3
INST_HG = 1 so I will be installing Mercurial
INST_ENZO = 0 so I won't be checking out Enzo
INST_PYX = 0 so I won't be installing PyX
INST_SCIPY = 0 so I won't be installing scipy
INST_0MQ = 1 so I will be installing ZeroMQ
INST_ROCKSTAR = 0 so I won't be installing Rockstar
HDF5_DIR is not set, so I will be installing HDF5
Installation will be to
/Users/user/yt_2.6/yt-x86_64
and I'll be logging the installation in
/Users/user/yt_2.6/yt-x86_64/yt_install.log
I think that about wraps it up. If you want to continue, hit enter.
If you'd rather stop, maybe think things over, even grab a sandwich,
hit Ctrl-C.
Looks like you're running on Mac OSX.
NOTE: you must have the Xcode command line tools installed.
The instructions for obtaining these tools varies according
to your exact OS version. On older versions of OS X, you
must register for an account on the apple developer tools
website: https://developer.apple.com/downloads to obtain the
download link.
We have gathered some additional instructions for each
version of OS X below. If you have trouble installing yt
after following these instructions, don't hesitate to contact
the yt user's e-mail list.
You can see which version of OSX you are running by clicking
'About This Mac' in the apple menu on the left hand side of
menu bar. We're assuming that you've installed all operating
system updates; if you have an older version, we suggest
running software update and installing all available updates.
OS X 10.5.8: search for and download Xcode 3.1.4 from the
Apple developer tools website.
OS X 10.6.8: search for and download Xcode 3.2 from the Apple
developer tools website. You can either download the
Xcode 3.2.2 Developer Tools package (744 MB) and then use
Software Update to update to XCode 3.2.6 or
alternatively, you can download the Xcode 3.2.6/iOS SDK
bundle (4.1 GB).
OS X 10.7.5: download Xcode 4.2 from the mac app store
(search for Xcode).
Alternatively, download the Xcode command line tools from
the Apple developer tools website.
OS X 10.8.4 and 10.9: download Xcode 5.02 from the mac app store.
(search for Xcode).
Additionally, you will have to manually install the Xcode
command line tools.
For OS X 10.8, see:
http://stackoverflow.com/questions/9353444
For OS X 10.9, the command line tools can be installed
with the following command:
xcode-select --install
========================================================================
[hit enter]
Awesome! Here we go.
Using wget
Using shasum -a 512
Downloading xray_emissivity.h5 from yt-project.org
2013-12-01 16:49:21 URL:http://yt-project.org/data/xray_emissivity.h5
[2147728/2147728] -> "xray_emissivity.h5" [1]
Downloading hdf5-1.8.11.tar.gz from yt-project.org
2013-12-01 16:49:25
URL:http://yt-project.org/dependencies/hdf5-1.8.11.tar.gz
[8088169/8088169] -> "hdf5-1.8.11.tar.gz" [1]
Downloading zlib-1.2.8.tar.gz from yt-project.org
2013-12-01 16:49:25
URL:http://yt-project.org/dependencies/zlib-1.2.8.tar.gz [571091/571091]
-> "zlib-1.2.8.tar.gz" [1]
Downloading bzip2-1.0.6.tar.gz from yt-project.org
2013-12-01 16:49:26
URL:http://yt-project.org/dependencies/bzip2-1.0.6.tar.gz
[782025/782025] -> "bzip2-1.0.6.tar.gz" [1]
Downloading libpng-1.6.3.tar.gz from yt-project.org
2013-12-01 16:49:27
URL:http://yt-project.org/dependencies/libpng-1.6.3.tar.gz
[1299272/1299272] -> "libpng-1.6.3.tar.gz" [1]
Downloading freetype-2.4.12.tar.gz from yt-project.org
2013-12-01 16:49:29
URL:http://yt-project.org/dependencies/freetype-2.4.12.tar.gz
[2117909/2117909] -> "freetype-2.4.12.tar.gz" [1]
Downloading sqlite-autoconf-3071700.tar.gz from yt-project.org
2013-12-01 16:49:30
URL:http://yt-project.org/dependencies/sqlite-autoconf-3071700.tar.gz
[1876108/1876108] -> "sqlite-autoconf-3071700.tar.gz" [1]
Downloading zeromq-3.2.4.tar.gz from yt-project.org
2013-12-01 16:49:31
URL:http://yt-project.org/dependencies/zeromq-3.2.4.tar.gz
[2083123/2083123] -> "zeromq-3.2.4.tar.gz" [1]
Downloading pyzmq-13.1.0.tar.gz from yt-project.org
2013-12-01 16:49:32
URL:http://yt-project.org/dependencies/pyzmq-13.1.0.tar.gz
[838742/838742] -> "pyzmq-13.1.0.tar.gz" [1]
Downloading tornado-3.1.tar.gz from yt-project.org
2013-12-01 16:49:33
URL:http://yt-project.org/dependencies/tornado-3.1.tar.gz
[374189/374189] -> "tornado-3.1.tar.gz" [1]
Downloading Python-2.7.6.tgz from yt-project.org
2013-12-01 16:49:37
URL:http://yt-project.org/dependencies/Python-2.7.6.tgz
[14725931/14725931] -> "Python-2.7.6.tgz" [1]
Downloading numpy-1.7.1.tar.gz from yt-project.org
2013-12-01 16:49:38
URL:http://yt-project.org/dependencies/numpy-1.7.1.tar.gz
[2838240/2838240] -> "numpy-1.7.1.tar.gz" [1]
Downloading matplotlib-1.3.0.tar.gz from yt-project.org
2013-12-01 16:49:48
URL:http://yt-project.org/dependencies/matplotlib-1.3.0.tar.gz
[42098180/42098180] -> "matplotlib-1.3.0.tar.gz" [1]
Downloading mercurial-2.8.tar.gz from yt-project.org
2013-12-01 16:49:51
URL:http://yt-project.org/dependencies/mercurial-2.8.tar.gz
[3833669/3833669] -> "mercurial-2.8.tar.gz" [1]
Downloading ipython-1.1.0.tar.gz from yt-project.org
2013-12-01 16:49:54
URL:http://yt-project.org/dependencies/ipython-1.1.0.tar.gz
[8658909/8658909] -> "ipython-1.1.0.tar.gz" [1]
Downloading h5py-2.1.3.tar.gz from yt-project.org
2013-12-01 16:49:55
URL:http://yt-project.org/dependencies/h5py-2.1.3.tar.gz [988478/988478]
-> "h5py-2.1.3.tar.gz" [1]
Downloading Cython-0.19.1.tar.gz from yt-project.org
2013-12-01 16:49:57
URL:http://yt-project.org/dependencies/Cython-0.19.1.tar.gz
[1384406/1384406] -> "Cython-0.19.1.tar.gz" [1]
Downloading reason-js-20120623.zip from yt-project.org
2013-12-01 16:50:01
URL:http://yt-project.org/dependencies/reason-js-20120623.zip
[6786705/6786705] -> "reason-js-20120623.zip" [1]
Downloading Forthon-0.8.11.tar.gz from yt-project.org
2013-12-01 16:50:01
URL:http://yt-project.org/dependencies/Forthon-0.8.11.tar.gz
[89277/89277] -> "Forthon-0.8.11.tar.gz" [1]
Downloading nose-1.3.0.tar.gz from yt-project.org
2013-12-01 16:50:02
URL:http://yt-project.org/dependencies/nose-1.3.0.tar.gz [404909/404909]
-> "nose-1.3.0.tar.gz" [1]
Downloading python-hglib-1.0.tar.gz from yt-project.org
2013-12-01 16:50:02
URL:http://yt-project.org/dependencies/python-hglib-1.0.tar.gz
[27833/27833] -> "python-hglib-1.0.tar.gz" [1]
Downloading sympy-0.7.3.tar.gz from yt-project.org
2013-12-01 16:50:06
URL:http://yt-project.org/dependencies/sympy-0.7.3.tar.gz
[6379972/6379972] -> "sympy-0.7.3.tar.gz" [1]
Downloading rockstar-0.99.6.tar.gz from yt-project.org
2013-12-01 16:50:06
URL:http://yt-project.org/dependencies/rockstar-0.99.6.tar.gz
[121874/121874] -> "rockstar-0.99.6.tar.gz" [1]
Installing BZLIB
Installing ZLIB
Installing PNG
Installing FreeType2
Installing HDF5
Installing SQLite3
Installing Python. This may take a while, but don't worry. yt loves you.
Installing mercurial-2.8
********************************************
FAILURE REPORT:
********************************************
running build_mo
creating mercurial/locale
creating mercurial/locale/da
creating mercurial/locale/da/LC_MESSAGES
generating mercurial/locale/da/LC_MESSAGES/hg.mo from i18n/da.po
msgfmt -v -o mercurial/locale/da/LC_MESSAGES/hg.mo i18n/da.po -c
dyld: Library not loaded:
/Applications/Octave.app/Contents/Resources/lib/libgettextsrc-0.18.dylib
Referenced from:
/Applications/Octave3.4.0/Octave.app/Contents/Resources/bin/msgfmt
Reason: image not found
error: command 'msgfmt' terminated by signal 5
********************************************
********************************************
Failure. Check /Users/user/yt_2.6/yt-x86_64/yt_install.log. The last
10 lines are above.
How do I fix the above failure? Any advice?
Sam Dupree.
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