[yt-users] broke yt trying to update

Stephanie Tonnesen stonnes at gmail.com
Wed Aug 28 19:34:46 PDT 2013 

Okay!  Thanks for all the help, the new installation loaded yt.mods for me
(other checks will have to wait for tomorrow)!

For anyone who is interested, here are two things I thought were sort of
strange in the installation:

1)  on my first attempt at bash install_script.sh, the installation failed
with the message below:

Installing BZLIB
Installing ZLIB
Installing PNG
Installing FreeType2
Installing HDF5
Installing SQLite3
Installing Python.  This may take a while, but don't worry.  yt loves you.
Installing mercurial-2.7
Setting YT_DIR=/u/stonnes/Installs/yt-x86_64/src/yt-hg/
Installing distribute
Installing pip
Installing numpy-1.7.1
Installing matplotlib-1.3.0
Installing ZeroMQ
********************************************
        FAILURE REPORT:
********************************************

  CXXLD  test_invalid_rep
  CXX    test_msg_flags.o
  CXXLD  test_msg_flags
  CXX    test_connect_resolve.o
  CXXLD  test_connect_resolve
  CXX    test_connect_delay.o
test_connect_delay.cpp:260:2: error: no newline at end of file
make[1]: *** [test_connect_delay.o] Error 1
make[1]: Leaving directory
`/u/stonnes/Installs/yt-x86_64/src/zeromq-3.2.3/tests'
make: *** [install-recursive] Error 1

********************************************
********************************************
Failure.  Check /u/stonnes/Installs/yt-x86_64/yt_install.log.  The last 10
lines are above.

This was easily fixed by just adding a line at the end of the file.   I am
not sure if it was my computer that was the problem, or if a recent change
is going to make this fail for other people, too.

2)  This initial set-up list looks normal, but it seems strange that for
*almost* everything =1 means the installation will happen, EXCEPT Rockstar.

INST_ZLIB       = 1 so I will  be installing zlib
INST_BZLIB      = 1 so I will  be installing bzlib
INST_PNG        = 1 so I will  be installing libpng
INST_FTYPE      = 1 so I will  be installing freetype2
INST_SQLITE3    = 1 so I will  be installing SQLite3
INST_HG         = 1 so I will  be installing Mercurial
INST_ENZO       = 0 so I won't be checking out Enzo
INST_PYX        = 0 so I won't be installing PyX
INST_SCIPY      = 0 so I won't be installing scipy
INST_0MQ        = 1 so I will  be installing ZeroMQ
INST_ROCKSTAR   = 0 so I will  be installing Rockstar


-Stephanie


On Wed, Aug 28, 2013 at 9:25 PM, j s oishi <jsoishi at gmail.com> wrote:

> Yup, that's exactly where it goes.
>
> j
>
>
> On Wed, Aug 28, 2013 at 9:24 PM, Stephanie Tonnesen <stonnes at gmail.com>wrote:
>
>> Actually, another question then about rerunning a new copy of the install
>> script.  Where do I put it to run it again?  right now my file structure
>> looks like
>>
>> /u/stonnes/Installs/yt-x86_64/
>> bin/
>> include/
>> lib/
>> man/
>> share/
>> src/
>> yt_install.log
>>
>> do I put the new install_script.sh in Installs/ ?
>>
>> Thanks again,
>>
>> Stephanie
>>
>>
>> On Wed, Aug 28, 2013 at 9:14 PM, Stephanie Tonnesen <stonnes at gmail.com>wrote:
>>
>>> So running yt update --all did not work, unfortunately.  It still gives
>>> me the error:
>>>
>>> ImportError: No module names write_array
>>>
>>> Looks like I might have to run a new copy of the install script.
>>>
>>> Thanks!
>>>
>>> Stephanie
>>>
>>>
>>> On Wed, Aug 28, 2013 at 4:40 PM, Matthew Turk <matthewturk at gmail.com>wrote:
>>>
>>>> Hi Stephanie,
>>>>
>>>> Looks to me like write_array is not accessible anymore, which is
>>>> breaking the "yt" command.  (This is a problem we should address.)  At
>>>> worst, you may need to re-run a new copy of the install script; you
>>>> can do this over top of the old one, or remove and start anew.
>>>>
>>>> We have some packaging plans under way right now that will reduce the
>>>> importance of the install script and the "yt update" command.  But
>>>> more on that as they are available!
>>>>
>>>> -Matt
>>>>
>>>> On Wed, Aug 28, 2013 at 3:55 PM, Stephanie Tonnesen <stonnes at gmail.com>
>>>> wrote:
>>>> > Dear all,
>>>> >
>>>> > After a pretty long (few month) hiatus, I just tried to update my yt
>>>> and
>>>> > seem to have broken it.
>>>> >
>>>> > Now my desktop is frozen so I can't cut and paste the long outputs,
>>>> but it
>>>> > boils down to:
>>>> >
>>>> >>yt update
>>>> >
>>>> >
>>>> > The current version of the code is:
>>>> >
>>>> > ___
>>>> > 0be45301e0eb (yt) tip
>>>> > ___
>>>> >
>>>> > This version CAN be automatically updated.
>>>> >
>>>> > ....
>>>> > added 1740 changesets with 3520 changes to 355 files (+1 heads)
>>>> > Updating the repository
>>>> > 126 files updates, 0 files merged, 0 files removed, 0 files unresolved
>>>> > BROKEN:  See /u/stonnes/Installs/yt-x86_64/src/yt-hg/yt_updater.log
>>>> >
>>>> > So I looked at that
>>>> >
>>>> > and the first thing it had was:
>>>> > pulling from https://bitbucket.org/yt_analysis/yt/
>>>> > (run 'hg update' to get a working copy)
>>>> >
>>>> > So I ran hg update and then it failed and said I had no module named
>>>> > write_array
>>>> >
>>>> > When I start python2.7
>>>> >
>>>> > and type
>>>> >>> from yt.mods import *
>>>> >
>>>> > I get the same error (no module write_array)
>>>> >
>>>> > Any advice would be appreciated!
>>>> >
>>>> > Thanks,
>>>> >
>>>> > Stephanie
>>>> >
>>>> > _______________________________________________
>>>> > yt-users mailing list
>>>> > yt-users at lists.spacepope.org
>>>> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>>> >
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>>>
>>>
>>
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