[yt-users] Making slices of Athena SMR data

[John ZuHone]

Hi Eve,

This is odd. I'm actually getting it to work:

http://i.imgur.com/iMQttWd.png

I don't get it, because it looks like your yt is up to date.

Can you send your athinput.kh?

John

On Aug 6, 2013, at 12:56 AM, Eve Lee <elee at cita.utoronto.ca> wrote:

> I've uploaded the figures here:
> 
> http://i.imgur.com/7T5N11o.png
> http://i.imgur.com/nOsLfQ9.png
> http://i.imgur.com/BfojOOa.png
> 
> Best Regards,
> 
> Eve
> 
> On 08/05/2013 08:56 PM, John ZuHone wrote:
>> Also, could you send over some of the figures?
>> 
>> John
>> 
>> On Aug 5, 2013, at 11:30 PM, Eve Lee <elee at cita.utoronto.ca> wrote:
>> 
>>> Hi John,
>>> 
>>> Yes, it is. Thank you for your help.
>>> 
>>> Best Regards,
>>> 
>>> Eve
>>> 
>>> On 08/05/2013 08:29 PM, John ZuHone wrote:
>>>> Hi Eve,
>>>> 
>>>> Is this just the 2-D K-H test simulation with SMR? If I could run it myself it would make it easier to debug.
>>>> 
>>>> Best,
>>>> 
>>>> John
>>>> 
>>>> On Aug 5, 2013, at 5:28 PM, Eve Lee <elee at cita.utoronto.ca> wrote:
>>>> 
>>>>> Hi John,
>>>>> 
>>>>> Following is the output from yt instinfo
>>>>> 
>>>>> yt module located at:
>>>>> /home/evejlee/.local/lib/python2.7/site-packages/yt-2.6dev-py2.7-linux-x86_64.egg
>>>>> The supplemental repositories are located at:
>>>>>    /pfs/sw/yt-x86_64/src/yt-supplemental
>>>>> 
>>>>> The current version of the code is:
>>>>> 
>>>>> ---
>>>>> f936432ed45d yt
>>>>> ---
>>>>> 
>>>>> Best Regards,
>>>>> 
>>>>> Eve
>>>>> 
>>>>> On 08/05/2013 02:22 PM, John ZuHone wrote:
>>>>>> Hi Eve,
>>>>>> 
>>>>>> Sorry that you're having trouble!
>>>>>> 
>>>>>> Just wanted to check real quick before anything else--which version of yt are you using? Also, are you using the stable branch or the development branch? Support for Athena SMR exists in yt versions 2.5.3 and later.
>>>>>> 
>>>>>> Best,
>>>>>> 
>>>>>> John
>>>>>> 
>>>>>> On Aug 5, 2013, at 5:13 PM, Eve Lee <elee at cita.utoronto.ca> wrote:
>>>>>> 
>>>>>>> Hello,
>>>>>>> 
>>>>>>> I'm trying to make a slice plot of Athena MPI SMR data using TimeSeriesData, and I find that the code only make slices out of the base level and blanks out deeper level regions.
>>>>>>> 
>>>>>>> Following is how I read in the Athena vtk files:
>>>>>>> 
>>>>>>> ts = TimeSeriesData.from_filenames('id0/kh*.vtk', parallel=True)
>>>>>>> my_storage={}
>>>>>>> for sto,pf in ts.piter(storage=my_storage):
>>>>>>>   slc = SlicePlot(pf, 'z', 'Density')
>>>>>>>   slc.set_zlim('Density', 0.0, 3.0)
>>>>>>>   num = (pf.h.hierarchy_filename).split('.')[1]
>>>>>>>   slc.save('./slice/'+num)
>>>>>>> 
>>>>>>> all my vtk files are in id0, ..., idn where n=number of processors I used, and I'm only using 1 more level of refinement.
>>>>>>> 
>>>>>>> Thanks in advance!
>>>>>>> 
>>>>>>> Best Regards,
>>>>>>> 
>>>>>>> Eve
>>>>>>> 
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