[yt-users] Making slices of Athena SMR data

[John ZuHone]

I'm not having any trouble loading my parallel SMR datasets in 3D. 

Or by parallel do you mean running yt in parallel?

On Aug 6, 2013, at 3:07 AM, Nathan Goldbaum <nathan12343 at gmail.com> wrote:

> I looked at this earlier with Eve and noticed that there wasn't an obvious way to load a parallel SMR Athena dataset.  I believe Eve's failing data set was produced in parallel and was loaded using the path to the xtk file in the id0 folder.
> 
> It might also help to see your script, specifically the call to 'load()'.
> 
> On Tuesday, August 6, 2013, John ZuHone wrote:
> Hi Eve,
> 
> This is odd. I'm actually getting it to work:
> 
> http://i.imgur.com/iMQttWd.png
> 
> I don't get it, because it looks like your yt is up to date.
> 
> Can you send your athinput.kh?
> 
> John
> 
> On Aug 6, 2013, at 12:56 AM, Eve Lee <elee at cita.utoronto.ca> wrote:
> 
> > I've uploaded the figures here:
> >
> > http://i.imgur.com/7T5N11o.png
> > http://i.imgur.com/nOsLfQ9.png
> > http://i.imgur.com/BfojOOa.png
> >
> > Best Regards,
> >
> > Eve
> >
> > On 08/05/2013 08:56 PM, John ZuHone wrote:
> >> Also, could you send over some of the figures?
> >>
> >> John
> >>
> >> On Aug 5, 2013, at 11:30 PM, Eve Lee <elee at cita.utoronto.ca> wrote:
> >>
> >>> Hi John,
> >>>
> >>> Yes, it is. Thank you for your help.
> >>>
> >>> Best Regards,
> >>>
> >>> Eve
> >>>
> >>> On 08/05/2013 08:29 PM, John ZuHone wrote:
> >>>> Hi Eve,
> >>>>
> >>>> Is this just the 2-D K-H test simulation with SMR? If I could run it myself it would make it easier to debug.
> >>>>
> >>>> Best,
> >>>>
> >>>> John
> >>>>
> >>>> On Aug 5, 2013, at 5:28 PM, Eve Lee <elee at cita.utoronto.ca> wrote:
> >>>>
> >>>>> Hi John,
> >>>>>
> >>>>> Following is the output from yt instinfo
> >>>>>
> >>>>> yt module located at:
> >>>>> /home/evejlee/.local/lib/python2.7/site-packages/yt-2.6dev-py2.7-linux-x86_64.egg
> >>>>> The supplemental repositories are located at:
> >>>>>    /pfs/sw/yt-x86_64/src/yt-supplemental
> >>>>>
> >>>>> The current version of the code is:
> >>>>>
> >>>>> ---
> >>>>> f936432ed45d yt
> >>>>> ---
> >>>>>
> >>>>> Best Regards,
> >>>>>
> >>>>> Eve
> >>>>>
> >>>>> On 08/05/2013 02:22 PM, John ZuHone wrote:
> >>>>>> Hi Eve,
> >>>>>>
> >>>>>> Sorry that you're having trouble!
> >>>>>>
> >>>>>> Just wanted to check real quick before anything else--which version of yt are you using? Also, are you using the stable branch or the development branch? Support for Athena SMR exists in yt versions 2.5.3 and later.
> >>>>>>
> >>>>>> Best,
> >>>>>>
> >>>>>> John
> >>>>>>
> >>>>>> On Aug 5, 2013, at 5:13 PM, Eve Lee <elee at cita.utoronto.ca> wrote:
> >>>>>>
> >>>>>>> Hello,
> >>>>>>>
> >>>>>>> I'm trying to make a slice plot of Athena MPI SMR data using TimeSeriesData, and I find that the code only make slices out of the base level and blanks out deeper level regions.
> >>>>>>>
> >>>>>>> Following is how I read in the Athena vtk files:
> >>>>>>>
> >>>>>>> ts = TimeSeriesData.from_filenames('id0/kh*.vtk', parallel=True)
> >>>>>>> my_storage={}
> >>>>>>> for sto,pf in ts.piter(storage=my_storage):
> >>>>>>>   slc = SlicePlot(pf, 'z', 'Density')
> >>>>>>>   slc.set_zlim('Density', 0.0, 3.0)
> >>>>>>>   num = (pf.h.hierarchy_filename).split('.')[1]
> >>>>>>>   slc.save('./slice/'+num)
> >>>>>>>
> >>>>>>> all my vtk files are in id0, ..., idn where n=number of processors I used, and I'm only using 1 more level of refinement.
> >>>>>>>
> >>>>>>> Thanks in advance!
> >>>>>>>
> >>>>>>> Best Regards,
> >>>>>>>
> >>>>>>> Eve
> >>>>>>>
> >>>>>>> _______________________________________________
> >>>>>>> yt-users mailing list
> >>>>>>
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