[yt-users] Strange Behaviour in ProjectionPlot
Patrick Rieser
patrick.rieser at uibk.ac.at
Tue Nov 13 06:00:10 PST 2012
mpccm doesn't seem to be in the output. Do I have to set a switch
somewhere so that it is created?
level # grids # cells # cells^3
----------------------------------------------
0 1 4096 15
1 8 32768 31
2 64 262144 63
3 512 2097152 127
4 512 2097152 127
5 512 2097152 127
6 512 2097152 127
7 512 2097152 127
----------------------------------------------
2633 10784768
t = 3.03585620e+17 = 3.03585620e+17 s = 9.62004779e+09 years
Smallest Cell:
Width: 4.883e-04 unitary
Width: 1.562e-02 mpc
Width: 1.562e+01 kpc
Width: 1.562e+04 pc
Width: 3.223e+09 au
Width: 6.934e+11 rsun
Width: 2.995e+17 miles
Width: 4.821e+22 cm
Width: 4.821e+22 1
Best wishes,
Patrick
Am 13.11.2012 14:55, schrieb Matthew Turk:
> Hi Patrick,
>
> It gets autocreated by concatenating "mpc" with "cm", so it won't show
> up directly in the source. If you run pf.h.print_stats() it will
> print out all the available length units -- what shows up in there?
>
> -Matt
>
> On Tue, Nov 13, 2012 at 7:55 AM, Patrick Rieser
> <patrick.rieser at uibk.ac.at> wrote:
>> When I try
>>
>> pc.set_width((28,'mpccm'))
>>
>> it raises a key error:
>>
>>
>> Traceback (most recent call last):
>> File "projections.py", line 89, in <module>
>> pc.set_width((28,'mpccm'))
>> File
>> "/home/patrick/Programme/yt-x86_64/src/yt-hg/yt/visualization/plot_window.py",
>> line 81, in newfunc
>> rv = f(*args, **kwargs)
>> File
>> "/home/patrick/Programme/yt-x86_64/src/yt-hg/yt/visualization/plot_window.py",
>> line 458, in set_width
>> width = [w / self.pf[unit] for w in width]
>> File
>> "/home/patrick/Programme/yt-x86_64/src/yt-hg/yt/data_objects/static_output.py",
>> line 143, in __getitem__
>> raise KeyError(key)
>> KeyError: 'mpccm'
>>
>>
>> Also when I search through the yt source code, "mpccm" is only found in
>> universal_fields.py (in the WeakLensingConvergence field) and in
>> light_ray.py.
>>
>> Best wishes,
>> Patrick
>>
>>
>> Am 12.11.2012 20:32, schrieb Britton Smith:
>>
>> Patrick,
>>
>> Don't worry about it. I do that stuff all the time.
>>
>> Britton
>>
>>
>> On Mon, Nov 12, 2012 at 2:26 PM, Patrick Rieser <patrick.rieser at uibk.ac.at>
>> wrote:
>>> Ah damn, now I feel stupid. I should have realized that. I will try it
>>> tomorrow, but yes, that should fix it!
>>>
>>> Thanks a lot!
>>>
>>> Best wishes,
>>> Patrick
>>>
>>> Am 12.11.2012 19:38, schrieb Nathan Goldbaum:
>>>
>>>> If Britton is correct (and looking closely at your script, I suspect he
>>>> is) you'll likely fix the issue by specifying the width of the image in
>>>> comoving units:
>>>>
>>>> pc.set_width((28,'mpccm'))
>>>>
>>>> Right now the plot axes will still choose to annotate the x and y axes
>>>> using physical units, even though the width of the image will be the
>>>> comoving width you requested. Sorry for that bit of nonintuitiveness. Sam
>>>> Skillman just filed a bug about this issue which I will fix soon:
>>>> https://bitbucket.org/yt_analysis/yt/issue/463/plotwindow-axes-unit-defaults
>>>>
>>>> -Nathan
>>>>
>>>> On 11/12/12 10:25 AM, Britton Smith wrote:
>>>>> Hi Patrick,
>>>>>
>>>>> Is this a cosmology simulation? If so, I think the issue is that the
>>>>> window is in physical coordinates, which are increasing with time.
>>>>>
>>>>> Britton
>>>>>
>>>>>
>>>>> On Mon, Nov 12, 2012 at 1:21 PM, Nathan Goldbaum <nathan12343 at gmail.com
>>>>> <mailto:nathan12343 at gmail.com>> wrote:
>>>>>
>>>>> Hi Patrick,
>>>>>
>>>>> I'm unable to reproduce the issue you're seeing. I'm running the
>>>>> following script:
>>>>>
>>>>> from yt.mods import * # set up our namespace
>>>>> from yt.analysis_modules.level_sets.api import *
>>>>>
>>>>> pf = load("galaxy0030/galaxy0030")
>>>>>
>>>>> master_clump = pf.h.load_object('My_Clumps')
>>>>>
>>>>> all_clumps = get_lowest_clumps(master_clump)
>>>>>
>>>>> for i in range(1,3):
>>>>>
>>>>> prj = ProjectionPlot(pf,2,'Density',center='c')
>>>>>
>>>>> prj.set_width((20,'kpc'))
>>>>>
>>>>> slc.annotate_text([0.0,1.05], "Clump %s" % i)
>>>>>
>>>>> slc.annotate_clumps([all_clumps[i]])
>>>>>
>>>>> slc.save(str(i))
>>>>>
>>>>> I've previously saved the clump objects in the file "My_clumps".
>>>>> I did this following Britton's recipe from the workshop:
>>>>>
>>>>>
>>>>> https://bitbucket.org/brittonsmith/yt.workshop2012.clump-finding/src/1e7af99cec95fb307bb79055f908d39a200b7091/scripts/find_clumps_and_save.py?at=default
>>>>>
>>>>> When I run the script, I get the following two images:
>>>>>
>>>>> http://i.imgur.com/MhkaQ.png
>>>>> http://i.imgur.com/ZGzTl.png
>>>>>
>>>>> This script uses the IsolatedGalaxy dataset stored at
>>>>> yt-project.org/data <http://yt-project.org/data>
>>>>>
>>>>> It would help me track down what's going wrong if you could come
>>>>> up with a somewhat simpler script that reproduces the error,
>>>>> preferably using one of the datasets on yt-project.org
>>>>> <http://yt-project.org>. Please feel free to e-mail me in private
>>>>> or join us on irc so we can iterate on this.
>>>>>
>>>>> Cheers,
>>>>>
>>>>> Nathan
>>>>>
>>>>>
>>>>> On 11/12/12 9:50 AM, Patrick Rieser wrote:
>>>>>
>>>>> Hey all,
>>>>>
>>>>> So I still get some strange behaviour with the ProjectionPlot.
>>>>> If I use the projection.set_width() with the clumps callback
>>>>> method I get the real image shrinked inside the the plot
>>>>> window. Strange thing is, that it grows with each step! Here
>>>>> is a demonstration how it looks (you have to look closely as
>>>>> it doesn't grow that much each step):
>>>>>
>>>>> http://www.flickr.com/photos/87912862@N05/sets/72157631990474435/
>>>>>
>>>>> If I don't use the set_width() then the image itself looks
>>>>> fine, but the scale on the axis grows with each step. So it
>>>>> seems to be the same error than with fixed width.
>>>>>
>>>>>
>>>>> Best wishes,
>>>>> Patrick
>>>>>
>>>>>
>>>>>
>>>>> Here is the code that I am using:
>>>>>
>>>>> # ID is just a list of tuples with clumps/their position in an
>>>>> array
>>>>> # sim_files and clump_files is a list containing the filenames
>>>>> # get_myclump() simply returns a specific clump
>>>>>
>>>>> for j, series in enumerate(ID):
>>>>> for i in series:
>>>>> pf = load(sim_files[i[0]])
>>>>> myclump = get_myclump(clump_files[i[0]], i[1])
>>>>>
>>>>> pc = ProjectionPlot(pf, axis, my_field, center =
>>>>> pf.domain_center, weight_field = my_wfield)
>>>>> pc.set_width(28, "mpc")
>>>>> pc.annotate_text([0.0,1.05], "Clump %s" % j)
>>>>>
>>>>> if redshift:
>>>>> pc.annotate_text([0.917,1.05], "z = %0.4f" %
>>>>> pf.current_redshift)
>>>>> if grid:
>>>>> pc.annotate_grids()
>>>>> if fix_scale:
>>>>> pc.set_zlim(my_field,boundaries[0],boundaries[1])
>>>>>
>>>>> pc.set_cmap("Density", "idl01")
>>>>> pc.annotate_clumps(myclump)
>>>>>
>>>>> pc.save('%s/Clump_%s_File_%s_Nr_%s_%s_Projection.png'
>>>>> % (myBASEDIR, j, i[0], i[1], axis))
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