[yt-users] yt installation problem in fedora 14

Fri Feb 24 03:39:19 PST 2012

HI Prakash,

You could try renaming nr's complex to nr_complex.h and in NR-code
include "nr_complex.h".  Someone else here might have another idea,
but if you really want to get NumPy to compile with conflicting
complex.h files you may have to email to the NumPy mailing list.

-Matt

On Fri, Feb 24, 2012 at 6:35 AM, Prakash Sarkar
<cyclone.turner at gmail.com> wrote:
> /usr/local/include/complex.h : comes from numerical recipes I think it is
> conflicting with the /usr/include/complex.h
> which is for GCC. Is there any other way to rectify it without changing
>  /usr/local/include/complex.h.
>
>
> On Fri, Feb 24, 2012 at 4:57 PM, Prakash Sarkar <cyclone.turner at gmail.com>
> wrote:
>>
>> Hope it helps .
>> [prakash at shashank Desktop]$ locate complex.h
>> /home/prakash/Downloads/gsl-1.9/complex/gsl_complex.h
>> /home/prakash/Downloads/gsl-1.9/fft/gsl_dft_complex.h
>> /home/prakash/Downloads/gsl-1.9/fft/gsl_fft_complex.h
>> /home/prakash/Downloads/gsl-1.9/fft/gsl_fft_halfcomplex.h
>> /home/prakash/Downloads/gsl-1.9/vector/gsl_vector_complex.h
>> /usr/include/complex.h
>> /usr/include/boost/accumulators/numeric/functional/complex.hpp
>> /usr/include/boost/config/no_tr1/complex.hpp
>> /usr/include/boost/math/complex.hpp
>> /usr/include/boost/serialization/complex.hpp
>> /usr/include/boost/tr1/complex.hpp
>> /usr/include/boost/type_traits/is_complex.hpp
>> /usr/include/boost/typeof/std/complex.hpp
>> /usr/include/c++/4.5.1/complex.h
>> /usr/include/c++/4.5.1/tr1/complex.h
>> /usr/lib64/R/library/base/html/complex.html
>> /usr/local/include/complex.h
>> /usr/local/matlab/toolbox/rtw/rtwdemos/html/rtwdemo_complex.html
>>
>> /usr/local/yt/yt-x86_64/src/hdf5-1.8.7/tools/testfiles/tcompound_complex.h5
>>
>> /usr/local/yt/yt-x86_64/src/hdf5-1.8.7/tools/testfiles/tcompound_complex.h5.xml
>> /usr/share/doc/PyQt4-devel-4.8.3/html/qstyleoptioncomplex.html
>> /usr/share/doc/libstdc++-docs-4.5.1/html/manual/complex.html
>> /usr/share/doc/qtscriptbindings-0.1.0/doc/qstyleoptioncomplex.html
>> /usr/share/man/man0p/complex.h.0p.gz
>> [prakash at shashank Desktop]$
>>
>>
>> On Fri, Feb 24, 2012 at 4:48 PM, Matthew Turk <matthewturk at gmail.com>
>> wrote:
>>>
>>> Hi Prakash,
>>>
>>> Looking over the install log, it looks to me like there's a type that
>>> uses 'complex' but GCC doesn't know complex is a type specifier.  By
>>> default, numpy assumes you have complex.h ( see numpy/core/setup.py ).
>>>  For me, complex.h is located in /usr/include , but I don't know where
>>> it is located on your system -- in fact, there may be an additional
>>> complex.h that does not correctly define things (as the SAGE project
>>> found, in bug 8278) that is getting in the way.  Let me know what you
>>> can find,
>>>
>>> Matt
>>>
>>> PS Welcome to yt-users!
>>>
>>> On Fri, Feb 24, 2012 at 4:30 AM, Prakash Sarkar
>>> <cyclone.turner at gmail.com> wrote:
>>> > While Installing yt through installation script it fails while
>>> > installing
>>> > numpy-1.6.1 in fedora 14.
>>> > the output of the script is shown below
>>> >
>>> > [root at shashank yt]# bash install_script.sh
>>> >
>>> >
>>> > ========================================================================
>>> >
>>> > Hi there!  This is the YT installation script.  We're going to download
>>> > some stuff and install it to create a self-contained, isolated
>>> > environment for YT to run within.
>>> >
>>> > Inside the installation script you can set a few variables.  Here's
>>> > what
>>> > they're currently set to -- you can hit Ctrl-C and edit the values in
>>> > the script if you aren't such a fan.
>>> >
>>> > INST_ZLIB       = 1 so I will  be installing zlib
>>> > INST_BZLIB      = 1 so I will  be installing bzlib
>>> > INST_PNG        = 1 so I will  be installing libpng
>>> > INST_FTYPE      = 1 so I will  be installing freetype2
>>> > INST_SQLITE3    = 1 so I will  be installing SQLite3
>>> > INST_FORTHON    = 1 so I will  be installing Forthon (for Halo Finding,
>>> > etc)
>>> > INST_HG         = 1 so I will  be installing Mercurial
>>> > INST_ENZO       = 1 so I will  be checking out Enzo
>>> >
>>> > HDF5_DIR is not set, so I will be installing HDF5
>>> >
>>> > Installation will be to
>>> >   /usr/local/yt/yt-x86_64
>>> >
>>> > and I'll be logging the installation in
>>> >   /usr/local/yt/yt-x86_64/yt_install.log
>>> >
>>> > I think that about wraps it up.  If you want to continue, hit enter.
>>> > If you'd rather stop, maybe think things over, even grab a sandwich,
>>> > hit Ctrl-C.
>>> >
>>> >
>>> > ========================================================================
>>> >
>>> > [hit enter]
>>> >
>>> > Awesome!  Here we go.
>>> >
>>> > Using wget
>>> > Downloading HDF5
>>> > Downloading hdf5-1.8.7.tar.gz from yt-project.org
>>> > Downloading zlib-1.2.3.tar.bz2 from yt-project.org
>>> > Downloading bzip2-1.0.5.tar.gz from yt-project.org
>>> > Downloading libpng-1.2.43.tar.gz from yt-project.org
>>> > Downloading freetype-2.4.4.tar.gz from yt-project.org
>>> > Downloading sqlite-autoconf-3070500.tar.gz from yt-project.org
>>> > Downloading Python-2.7.2.tgz from yt-project.org
>>> > Downloading numpy-1.6.1.tar.gz from yt-project.org
>>> > Downloading matplotlib-1.1.0.tar.gz from yt-project.org
>>> > Downloading mercurial-2.0.tar.gz from yt-project.org
>>> > Downloading ipython-0.10.tar.gz from yt-project.org
>>> > Downloading h5py-2.0.1.tar.gz from yt-project.org
>>> > Downloading Cython-0.15.1.tar.gz from yt-project.org
>>> > Downloading Forthon-0.8.5.tar.gz from yt-project.org
>>> > Downloading ext-3.3.2.zip from yt-project.org
>>> > Downloading ext-slate-110328.zip from yt-project.org
>>> > Downloading PhiloGL-1.4.2.zip from yt-project.org
>>> > Installing Mercurial.
>>> > Setting YT_DIR=/usr/local/yt/yt-x86_64/src/yt-hg/
>>> > Installing distribute
>>> > Installing pip
>>> > Installing numpy-1.6.1 (arguments: 'numpy-1.6.1')
>>> > Failure.  Check /usr/local/yt/yt-x86_64/yt_install.log.
>>> > [root at shashank yt]#
>>> >
>>> >
>>> >
>>> > I have attached the yt_install.log file
>>> > Please help
>>> >
>>> > thanks in advance
>>> >
>>> > Prakash
>>> >
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>>
>>
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