[yt-users] yt installation problem in fedora 14

[Prakash Sarkar]

/usr/local/include/complex.h : comes from numerical recipes I think it is
conflicting with the /usr/include/complex.h
which is for GCC. Is there any other way to rectify it without changing
 /usr/local/include/complex.h.

On Fri, Feb 24, 2012 at 4:57 PM, Prakash Sarkar <cyclone.turner at gmail.com>wrote:

> Hope it helps .
> [prakash at shashank Desktop]$ locate complex.h
> /home/prakash/Downloads/gsl-1.9/complex/gsl_complex.h
> /home/prakash/Downloads/gsl-1.9/fft/gsl_dft_complex.h
> /home/prakash/Downloads/gsl-1.9/fft/gsl_fft_complex.h
> /home/prakash/Downloads/gsl-1.9/fft/gsl_fft_halfcomplex.h
> /home/prakash/Downloads/gsl-1.9/vector/gsl_vector_complex.h
> /usr/include/complex.h
> /usr/include/boost/accumulators/numeric/functional/complex.hpp
> /usr/include/boost/config/no_tr1/complex.hpp
> /usr/include/boost/math/complex.hpp
> /usr/include/boost/serialization/complex.hpp
> /usr/include/boost/tr1/complex.hpp
> /usr/include/boost/type_traits/is_complex.hpp
> /usr/include/boost/typeof/std/complex.hpp
> /usr/include/c++/4.5.1/complex.h
> /usr/include/c++/4.5.1/tr1/complex.h
> /usr/lib64/R/library/base/html/complex.html
> /usr/local/include/complex.h
> /usr/local/matlab/toolbox/rtw/rtwdemos/html/rtwdemo_complex.html
> /usr/local/yt/yt-x86_64/src/hdf5-1.8.7/tools/testfiles/tcompound_complex.h5
>
> /usr/local/yt/yt-x86_64/src/hdf5-1.8.7/tools/testfiles/tcompound_complex.h5.xml
> /usr/share/doc/PyQt4-devel-4.8.3/html/qstyleoptioncomplex.html
> /usr/share/doc/libstdc++-docs-4.5.1/html/manual/complex.html
> /usr/share/doc/qtscriptbindings-0.1.0/doc/qstyleoptioncomplex.html
> /usr/share/man/man0p/complex.h.0p.gz
> [prakash at shashank Desktop]$
>
>
> On Fri, Feb 24, 2012 at 4:48 PM, Matthew Turk <matthewturk at gmail.com>wrote:
>
>> Hi Prakash,
>>
>> Looking over the install log, it looks to me like there's a type that
>> uses 'complex' but GCC doesn't know complex is a type specifier.  By
>> default, numpy assumes you have complex.h ( see numpy/core/setup.py ).
>>  For me, complex.h is located in /usr/include , but I don't know where
>> it is located on your system -- in fact, there may be an additional
>> complex.h that does not correctly define things (as the SAGE project
>> found, in bug 8278) that is getting in the way.  Let me know what you
>> can find,
>>
>> Matt
>>
>> PS Welcome to yt-users!
>>
>> On Fri, Feb 24, 2012 at 4:30 AM, Prakash Sarkar
>> <cyclone.turner at gmail.com> wrote:
>> > While Installing yt through installation script it fails while
>> installing
>> > numpy-1.6.1 in fedora 14.
>> > the output of the script is shown below
>> >
>> > [root at shashank yt]# bash install_script.sh
>> >
>> > ========================================================================
>> >
>> > Hi there!  This is the YT installation script.  We're going to download
>> > some stuff and install it to create a self-contained, isolated
>> > environment for YT to run within.
>> >
>> > Inside the installation script you can set a few variables.  Here's what
>> > they're currently set to -- you can hit Ctrl-C and edit the values in
>> > the script if you aren't such a fan.
>> >
>> > INST_ZLIB       = 1 so I will  be installing zlib
>> > INST_BZLIB      = 1 so I will  be installing bzlib
>> > INST_PNG        = 1 so I will  be installing libpng
>> > INST_FTYPE      = 1 so I will  be installing freetype2
>> > INST_SQLITE3    = 1 so I will  be installing SQLite3
>> > INST_FORTHON    = 1 so I will  be installing Forthon (for Halo Finding,
>> etc)
>> > INST_HG         = 1 so I will  be installing Mercurial
>> > INST_ENZO       = 1 so I will  be checking out Enzo
>> >
>> > HDF5_DIR is not set, so I will be installing HDF5
>> >
>> > Installation will be to
>> >   /usr/local/yt/yt-x86_64
>> >
>> > and I'll be logging the installation in
>> >   /usr/local/yt/yt-x86_64/yt_install.log
>> >
>> > I think that about wraps it up.  If you want to continue, hit enter.
>> > If you'd rather stop, maybe think things over, even grab a sandwich,
>> > hit Ctrl-C.
>> >
>> > ========================================================================
>> >
>> > [hit enter]
>> >
>> > Awesome!  Here we go.
>> >
>> > Using wget
>> > Downloading HDF5
>> > Downloading hdf5-1.8.7.tar.gz from yt-project.org
>> > Downloading zlib-1.2.3.tar.bz2 from yt-project.org
>> > Downloading bzip2-1.0.5.tar.gz from yt-project.org
>> > Downloading libpng-1.2.43.tar.gz from yt-project.org
>> > Downloading freetype-2.4.4.tar.gz from yt-project.org
>> > Downloading sqlite-autoconf-3070500.tar.gz from yt-project.org
>> > Downloading Python-2.7.2.tgz from yt-project.org
>> > Downloading numpy-1.6.1.tar.gz from yt-project.org
>> > Downloading matplotlib-1.1.0.tar.gz from yt-project.org
>> > Downloading mercurial-2.0.tar.gz from yt-project.org
>> > Downloading ipython-0.10.tar.gz from yt-project.org
>> > Downloading h5py-2.0.1.tar.gz from yt-project.org
>> > Downloading Cython-0.15.1.tar.gz from yt-project.org
>> > Downloading Forthon-0.8.5.tar.gz from yt-project.org
>> > Downloading ext-3.3.2.zip from yt-project.org
>> > Downloading ext-slate-110328.zip from yt-project.org
>> > Downloading PhiloGL-1.4.2.zip from yt-project.org
>> > Installing Mercurial.
>> > Setting YT_DIR=/usr/local/yt/yt-x86_64/src/yt-hg/
>> > Installing distribute
>> > Installing pip
>> > Installing numpy-1.6.1 (arguments: 'numpy-1.6.1')
>> > Failure.  Check /usr/local/yt/yt-x86_64/yt_install.log.
>> > [root at shashank yt]#
>> >
>> >
>> >
>> > I have attached the yt_install.log file
>> > Please help
>> >
>> > thanks in advance
>> >
>> > Prakash
>> >
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>> >
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