[yt-users] Fortran kD Tree Setup
Geoffrey So
gsiisg at gmail.com
Wed Aug 29 10:39:39 PDT 2012
For me, what works is using an older version of Forthon at:
http://hifweb.lbl.gov/Forthon/Forthon-0.8.7.tgz
I just copied the download link from the official site and changed the
0.8.10 to 0.8.7. I believe Stephen has asked the Forthon author to fix the
installation issue but I have not attempted to use the latest.
From
G.S.
On Wed, Aug 29, 2012 at 10:05 AM, Francia F. Riesco <ff2214 at columbia.edu>wrote:
> Dear All,
> First, thank you for the previous help that I got from the ML. Now I
> have another issue.
> Traceback (most recent call last):
> File "/astro/py/halo_finder.py", line 14, in <module>
> hp = HP.HaloProfiler(fn, halo_list_file='HopAnalysis.**out')
> File
> "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**
> profiler/multi_halo_profiler.**py", line 310, in
> __init__
> self._load_halo_data()
> File
> "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**
> profiler/multi_halo_profiler.**py", line 967, in
> _load_halo_data
> self._run_hop(hop_file)
> File
> "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**
> profiler/multi_halo_profiler.**py", line 1124, in
> _run_hop
> **self.halo_finder_kwargs)
> File
> "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**finding/halo_objects.py",
> line 2268, in
> __init__
> premerge=premerge, tree=self.tree)
> File
> "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**finding/halo_objects.py",
> line 1639, in
>
> - Ignored:
> __init__
> HaloList.__init__(self, data_source, dm_only)
> File
> "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**finding/halo_objects.py",
> line 1067, in
> __init__
> self._run_finder()
> File
> "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**finding/halo_objects.py",
> line 1667, in
> _run_finder
> tree=self.tree)
> File
> "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**
> finding/parallel_hop/parallel_**hop_interface.py", line 73, in
> __init__
> self._chain_hop()
> File
> "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**
> finding/parallel_hop/parallel_**hop_interface.py", line 1536, in
> _chain_hop
> self._init_kd_tree()
> File
> "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**
> finding/parallel_hop/parallel_**hop_interface.py", line 351, in
> _init_kd_tree
> fKD.dens = na.zeros(self.size, dtype='float64', order='F')
> NameError: global name 'fKD' is not defined
>
> I tried to install Fortran kD Tree Setup
> http://yt-project.org/doc/**analysis_modules/running_**
> halofinder.html?highlight=**friend%20friend<http://yt-project.org/doc/analysis_modules/running_halofinder.html?highlight=friend%20friend>
>
> But I got the follow error.
> Using Forthon ()
> Forthon -F gfortran --compile_first fKD_source --no2underscores
> --with-numpy --fopt "-O3" fKD fKD_source.f90
> Usage: Forthon [options] pkgname [extra Fortran or C files to be
> compiled or objects to link] [options for distutils]
>
> Forthon: error: no such option: --with-numpy
> make: *** [fKD] Error 2
> X-Riesco-Francia:kdtree friesco$ sudo make
> Using Forthon ()
> Forthon -F gfortran --compile_first fKD_source --no2underscores
> --with-numpy --fopt "-O3" fKD fKD_source.f90
> Usage: Forthon [options] pkgname [extra Fortran or C files to be
> compiled or objects to link] [options for distutils]
>
> Forthon: error: no such option: --with-numpy
> make: *** [fKD] Error 2
>
> I am using Mac IOS Lion 10.7.4 and the latest YT build
> Thank in Advance
> ______________________________**_________________
> yt-users mailing list
> yt-users at lists.spacepope.org
> http://lists.spacepope.org/**listinfo.cgi/yt-users-**spacepope.org<http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20120829/0ce2bdef/attachment.html>
More information about the yt-users
mailing list