[yt-users] Fortran kD Tree Setup

[Geoffrey So]

For me, what works is using an older version of Forthon at:
http://hifweb.lbl.gov/Forthon/Forthon-0.8.7.tgz
I just copied the download link from the official site and changed the
0.8.10 to 0.8.7.  I believe Stephen has asked the Forthon author to fix the
installation issue but I have not attempted to use the latest.

From
G.S.

On Wed, Aug 29, 2012 at 10:05 AM, Francia F. Riesco <ff2214 at columbia.edu>wrote:

>    Dear All,
>    First, thank you for the previous help that I got from the ML. Now I
>     have another issue.
>     Traceback (most recent call last):
>        File "/astro/py/halo_finder.py", line 14, in <module>
>          hp = HP.HaloProfiler(fn, halo_list_file='HopAnalysis.**out')
>        File
>     "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**
> profiler/multi_halo_profiler.**py", line 310, in
>     __init__
>          self._load_halo_data()
>        File
>     "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**
> profiler/multi_halo_profiler.**py", line 967, in
>     _load_halo_data
>          self._run_hop(hop_file)
>        File
>     "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**
> profiler/multi_halo_profiler.**py", line 1124, in
>     _run_hop
>          **self.halo_finder_kwargs)
>        File
>     "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**finding/halo_objects.py",
> line 2268, in
>     __init__
>          premerge=premerge, tree=self.tree)
>        File
>     "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**finding/halo_objects.py",
> line 1639, in
>
> - Ignored:
>     __init__
>          HaloList.__init__(self, data_source, dm_only)
>        File
>     "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**finding/halo_objects.py",
> line 1067, in
>     __init__
>          self._run_finder()
>        File
>     "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**finding/halo_objects.py",
> line 1667, in
>     _run_finder
>          tree=self.tree)
>        File
>     "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**
> finding/parallel_hop/parallel_**hop_interface.py", line 73, in
>     __init__
>          self._chain_hop()
>        File
>     "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**
> finding/parallel_hop/parallel_**hop_interface.py", line 1536, in
>     _chain_hop
>          self._init_kd_tree()
>        File
>     "/astro/yt/yt-x86_64/src/yt-**hg/yt/analysis_modules/halo_**
> finding/parallel_hop/parallel_**hop_interface.py", line 351, in
>     _init_kd_tree
>          fKD.dens = na.zeros(self.size, dtype='float64', order='F')
>     NameError: global name 'fKD' is not defined
>
>     I tried to install Fortran kD Tree Setup
>     http://yt-project.org/doc/**analysis_modules/running_**
> halofinder.html?highlight=**friend%20friend<http://yt-project.org/doc/analysis_modules/running_halofinder.html?highlight=friend%20friend>
>
>     But I got the follow error.
>     Using Forthon ()
>     Forthon -F gfortran --compile_first fKD_source --no2underscores
>     --with-numpy --fopt "-O3" fKD fKD_source.f90
>     Usage: Forthon [options] pkgname [extra Fortran or C files to be
>     compiled or objects to link] [options for distutils]
>
>     Forthon: error: no such option: --with-numpy
>     make: *** [fKD] Error 2
>     X-Riesco-Francia:kdtree friesco$ sudo make
>     Using Forthon ()
>     Forthon -F gfortran --compile_first fKD_source --no2underscores
>     --with-numpy --fopt "-O3" fKD fKD_source.f90
>     Usage: Forthon [options] pkgname [extra Fortran or C files to be
>     compiled or objects to link] [options for distutils]
>
>     Forthon: error: no such option: --with-numpy
>     make: *** [fKD] Error 2
>
>     I am using Mac IOS Lion 10.7.4 and the latest YT build
>     Thank in Advance
> ______________________________**_________________
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>
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