[yt-users] Bug loading Ramses data

Sam Skillman samskillman at gmail.com
Tue May 31 09:55:53 PDT 2011


Hi Sam,

it looks like you are running from within the yt-hg/yt/frontends/ramses
directory.  Could you try running from a directory outside of the yt install
tree (yt-hg)?  I think it is just getting confused by importing modules
which are also in the directory.  Let us know if that fixes it.

Best,
Sam

On Tue, May 31, 2011 at 12:33 PM, Sam Geen <samgeen at astro.ox.ac.uk> wrote:

> Hi,
>
> I've recently installed YT and I'm getting an error in _ramses_reader.so
> when I start up YT; error message below. It's missing symbol
> _ZNSt8ios_base4InitD1Ev; Googling appears to suggest that it's related to
> Scipy. Am I missing something in the install? Let me know if you need any
> more information to unpick this one.
>
> Thanks!
>
> Sam
>
> -------
> samgeen at service0:~/Programming/yttest/yt-x86_64/src/yt-hg/yt/frontends/ramses>
> python
> Python 2.7.1 (r271:86832, May 31 2011, 13:44:37)
> [GCC Intel(R) C++ gcc 4.3 mode] on linux2
> Type "help", "copyright", "credits" or "license" for more information.
> >>> from yt.mods import *
> yt : [DEBUG    ] 2011-05-31 15:57:47,986 Set log level to 0
> WARNING : Can't import tables module...
> yt : [DEBUG    ] 2011-05-31 15:57:48,476 SIGUSR1 registered for traceback
> printing
> yt : [DEBUG    ] 2011-05-31 15:57:48,476 SIGUSR2 registered for IPython
> Insertion
> yt : [DEBUG    ] 2011-05-31 15:57:48,582 Registering: StaticOutput as
> <class 'yt.data_objects.static_output.StaticOutput'>
> yt : [DEBUG    ] 2011-05-31 15:57:48,593 Registering: EnzoStaticOutput as
> <class 'yt.frontends.enzo.data_structures.EnzoStaticOutput'>
> yt : [DEBUG    ] 2011-05-31 15:57:48,594 Registering:
> EnzoStaticOutputInMemory as <class
> 'yt.frontends.enzo.data_structures.EnzoStaticOutputInMemory'>
> yt : [DEBUG    ] 2011-05-31 15:57:48,599 Registering: OrionStaticOutput as
> <class 'yt.frontends.orion.data_structures.OrionStaticOutput'>
> yt : [DEBUG    ] 2011-05-31 15:57:48,603 Registering: FLASHStaticOutput as
> <class 'yt.frontends.flash.data_structures.FLASHStaticOutput'>
> yt : [DEBUG    ] 2011-05-31 15:57:48,605 Registering: TigerStaticOutput as
> <class 'yt.frontends.tiger.data_structures.TigerStaticOutput'>
> Traceback (most recent call last):
>  File "<stdin>", line 1, in <module>
>  File
> "/panfs/panasas/home/samgeen/Programming/yttest/yt-x86_64/src/yt-hg/yt/mods.py",
> line 68, in <module>
>   from yt.frontends.ramses.api import \
>  File
> "/panfs/panasas/home/samgeen/Programming/yttest/yt-x86_64/src/yt-hg/yt/frontends/ramses/api.py",
> line 31, in <module>
>   from .data_structures import \
>  File
> "/panfs/panasas/home/samgeen/Programming/yttest/yt-x86_64/src/yt-hg/yt/frontends/ramses/data_structures.py",
> line 37, in <module>
>   import _ramses_reader
> ImportError:
> /panfs/panasas/home/samgeen/Programming/yttest/yt-x86_64/src/yt-hg/yt/frontends/ramses/_ramses_reader.so:
> undefined symbol: _ZNSt8ios_base4InitD1Ev
> --------
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